Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012406.1

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

38184 .. 39331

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012406.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggaagatccttccgtagagaaaatcgcaatctccggcccggccttggcctccatgatccaacgcttctccacctcccgcggcgccgtcgacggcttaatcttcggccacgtcagcctcatcgcccccactctctccgacgacgattcctcgtcctcctcctcctctaccctcatcgccaccgtcacctccttcttctgctccaattcctccctctccttctacaccccctcgggtcgggtcgacccgctcctcctccgccgcctcgcccagccccaacccccctcctcccacctcctcggctggttctccggccgccgcaggacccacctccggccctccttacgcgaattcgccgtctccaactctctaatctccaaccctaacctcaccttcccaatccaaaactctccggcgccgatcgcagtcgatctcaaaccctgcctcttcttcctctttgcttccccgatctccgatcagacaatccacacgcacgagtaccgcgcctaccagttccgcagctccgcccactccttcgaccccaaatcgatcgacattgtcaacatcggcccggcgtttcgcggccactacggcgccttcagccccaactcgcagcttccggccttgccctgcgaattgagggtttcgccgatgaatgtggacaagggagaagagagtttagggcagttgaagaagggcttgaaggcccagagtgagctggacatgtgcgccgaggggttagaggtgaatagcctgagtaggctgatgggttcggaggctgtgaattacacttccggagtggaggagttgtatgagaagatgcttgtgaagattgagagcttggccaggcaagttgagaacagctctgccaagattcgagagcaggaagatcacaataggaagttgcgacacaaagcgactaggactgctggattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

312

Amino Acids

34.19

Weight (kDa)

7.75

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	83, 415, 593
AccBSI	CCGCTC	1 cut(s)	250
AccI	GTMKAC	2 cut(s)	90, 243
AccII	CGCG	4 cut(s)	81, 348, 504, 582
AccIII	TCCGGA	1 cut(s)	794
AclWI	GGATC	2 cut(s)	2, 52
AcoI	YGGCCR	4 cut(s)	106, 313, 583, 843
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	583
AcyI	GRCGYC	3 cut(s)	84, 416, 594
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	46, 237, 333
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	2 cut(s)	691, 703
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	845
AluBI	AGCT	5 cut(s)	522, 616, 718, 840, 864
AluI	AGCT	5 cut(s)	522, 616, 718, 840, 864
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	2, 52
Ama87I	CYCGRG	1 cut(s)	232
Aor13HI	TCCGGA	1 cut(s)	794
ApeKI	GCWGC	2 cut(s)	519, 613
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AspLEI	GCGC	5 cut(s)	86, 418, 506, 596, 731
AspS9I	GGNCC	5 cut(s)	38, 324, 336, 569, 706
AsuC2I	CCSGG	2 cut(s)	41, 572
AsuHPI	GGTGA	3 cut(s)	178, 382, 757
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	845
BanI	GGYRCC	3 cut(s)	83, 415, 593
BauI	CACGAG	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	531, 625
BccI	CCATC	1 cut(s)	760
BceAI	ACGGC	4 cut(s)	71, 109, 341, 607
BciT130I	CCWGG	1 cut(s)	847
BcnI	CCSGG	2 cut(s)	41, 572
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	1 cut(s)	921
BfoI	RGCGCY	3 cut(s)	87, 419, 597
BglI	GCCNNNNNGGC	1 cut(s)	591
BisI	GCNGC	7 cut(s)	82, 262, 316, 319, 520, 583, 614
BlsI	GCNGC	7 cut(s)	83, 263, 317, 320, 521, 584, 615
Bme1390I	CCNGG	3 cut(s)	41, 572, 847
Bme18I	GGWCC	1 cut(s)	324
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	5 cut(s)	38, 324, 336, 569, 706
BmiI	GGNNCC	4 cut(s)	85, 326, 417, 595
BmrFI	CCNGG	3 cut(s)	41, 572, 847
BmsI	GCATC	1 cut(s)	810
BplI	GAGNNNNNCTC	2 cut(s)	848, 880
BpuMI	CCSGG	2 cut(s)	41, 572
Bsa29I	ATCGAT	1 cut(s)	548
BsaHI	GRCGYC	3 cut(s)	84, 416, 594
BsaJI	CCNNGG	5 cut(s)	45, 79, 231, 298, 732
BsaWI	WCCGGW	1 cut(s)	794
BsaXI	ACNNNNNCTCC	2 cut(s)	794, 824
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 237, 333
Bse1I	ACTGG	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	794
BseBI	CCWGG	1 cut(s)	847
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	5 cut(s)	45, 79, 231, 298, 732
BseLI	CCNNNNNNNGG	3 cut(s)	46, 237, 333
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	1 cut(s)	511
BseRI	GAGGAG	8 cut(s)	148, 151, 154, 242, 245, 277, 287, 818
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	2 cut(s)	531, 625
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	4 cut(s)	81, 348, 504, 582
Bsh1285I	CGRYCG	3 cut(s)	316, 423, 552
BshNI	GGYRCC	3 cut(s)	83, 415, 593
BshVI	ATCGAT	1 cut(s)	548
BsiEI	CGRYCG	3 cut(s)	316, 423, 552
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	8 cut(s)	36, 41, 312, 334, 413, 572, 620, 795
BslI	CCNNNNNNNGG	3 cut(s)	46, 237, 333
BsmAI	GTCTC	1 cut(s)	364
BsmBI	CGTCTC	1 cut(s)	364
BsoBI	CYCGRG	1 cut(s)	232
Bsp13I	TCCGGA	1 cut(s)	794
Bsp143I	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
BspCNI	CTCAG	1 cut(s)	747
BspDI	ATCGAT	1 cut(s)	548
BspEI	TCCGGA	1 cut(s)	794
BspFNI	CGCG	4 cut(s)	81, 348, 504, 582
BspLI	GGNNCC	4 cut(s)	85, 326, 417, 595
BspPI	GGATC	2 cut(s)	2, 52
BspT107I	GGYRCC	3 cut(s)	83, 415, 593
BsrBI	CCGCTC	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	511
BssECI	CCNNGG	5 cut(s)	45, 79, 231, 298, 732
BssMI	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
BssNI	GRCGYC	3 cut(s)	84, 416, 594
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	847
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	452, 666
BstACI	GRCGYC	3 cut(s)	84, 416, 594
BstDEI	CTNAG	1 cut(s)	755
BstDSI	CCRYGG	1 cut(s)	79
BstFNI	CGCG	4 cut(s)	81, 348, 504, 582
BstH2I	RGCGCY	3 cut(s)	87, 419, 597
BstHHI	GCGC	5 cut(s)	86, 418, 506, 596, 731
BstKTI	GATC	8 cut(s)	10, 60, 423, 433, 471, 478, 552, 892
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
BstMCI	CGRYCG	3 cut(s)	316, 423, 552
BstMWI	GCNNNNNNNGC	4 cut(s)	114, 422, 591, 600
BstNI	CCWGG	1 cut(s)	847
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	39, 570, 845
BstUI	CGCG	4 cut(s)	81, 348, 504, 582
BstV1I	GCAGC	2 cut(s)	531, 625
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	548
BsuTUI	ATCGAT	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	106, 160
BtrI	CACGTC	1 cut(s)	112
CfoI	GCGC	5 cut(s)	86, 418, 506, 596, 731
Cfr13I	GGNCC	5 cut(s)	38, 324, 336, 569, 706
Cfr42I	CCGCGG	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	548
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	2 cut(s)	55, 724
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	755
DinI	GGCGCC	3 cut(s)	85, 417, 595
DpnI	GATC	8 cut(s)	9, 59, 422, 432, 470, 477, 551, 891
DpnII	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
EaeI	YGGCCR	4 cut(s)	106, 313, 583, 843
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	452, 666
EarI	CTCTTC	2 cut(s)	452, 666
EciI	GGCGGA	2 cut(s)	248, 514
EclXI	CGGCCG	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	324
Eco52I	CGGCCG	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	845
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	3 cut(s)	85, 417, 595
EheI	GGCGCC	3 cut(s)	85, 417, 595
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	2 cut(s)	58, 727
FaiI	YATR	3 cut(s)	56, 725, 813
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FatI	CATG	2 cut(s)	54, 723
FauI	CCCGC	2 cut(s)	86, 255
FblI	GTMKAC	2 cut(s)	90, 243
Fnu4HI	GCNGC	7 cut(s)	82, 262, 316, 319, 520, 583, 614
Fsp4HI	GCNGC	7 cut(s)	82, 262, 316, 319, 520, 583, 614
FspBI	CTAG	1 cut(s)	921
GlaI	GCGC	5 cut(s)	85, 417, 505, 595, 730
GluI	GCNGC	7 cut(s)	82, 262, 316, 319, 520, 583, 614
GsaI	CCCAGC	1 cut(s)	274
HaeII	RGCGCY	3 cut(s)	87, 419, 597
HapII	CCGG	8 cut(s)	36, 41, 312, 334, 413, 572, 620, 795
HhaI	GCGC	5 cut(s)	86, 418, 506, 596, 731
Hin1I	GRCGYC	3 cut(s)	84, 416, 594
Hin1II	CATG	2 cut(s)	58, 727
Hin6I	GCGC	5 cut(s)	84, 416, 504, 594, 729
HinP1I	GCGC	5 cut(s)	84, 416, 504, 594, 729
HincII	GTYRAC	3 cut(s)	91, 244, 562
HindII	GTYRAC	3 cut(s)	91, 244, 562
HinfI	GANTC	2 cut(s)	146, 874
HpaII	CCGG	8 cut(s)	36, 41, 312, 334, 413, 572, 620, 795
HphI	GGTGA	3 cut(s)	178, 382, 757
Hpy166II	GTNNAC	4 cut(s)	91, 244, 562, 661
Hpy188I	TCNGA	4 cut(s)	139, 475, 480, 775
Hpy188III	TCNNGA	2 cut(s)	795, 878
Hpy8I	GTNNAC	4 cut(s)	91, 244, 562, 661
Hpy99I	CGWCG	4 cut(s)	92, 95, 143, 146
HpyAV	CCTTC	8 cut(s)	21, 202, 229, 403, 544, 607, 688, 697
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	114, 422, 591, 600
HpyF3I	CTNAG	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	3 cut(s)	84, 416, 594
Hsp92II	CATG	2 cut(s)	58, 727
HspAI	GCGC	5 cut(s)	84, 416, 504, 594, 729
KasI	GGCGCC	3 cut(s)	83, 415, 593
Kpn2I	TCCGGA	1 cut(s)	794
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
LmnI	GCTCC	3 cut(s)	206, 255, 527
Lsp1109I	GCAGC	2 cut(s)	531, 625
LweI	GCATC	1 cut(s)	810
MaeI	CTAG	1 cut(s)	921
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	8 cut(s)	9, 59, 422, 432, 470, 477, 551, 891
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
MflI	RGATCY	1 cut(s)	7
MlsI	TGGCCA	1 cut(s)	845
MluCI	AATT	4 cut(s)	205, 350, 635, 784
MluNI	TGGCCA	1 cut(s)	845
Mly113I	GGCGCC	3 cut(s)	84, 416, 594
MmeI	TCCRAC	4 cut(s)	85, 162, 387, 402
Mox20I	TGGCCA	1 cut(s)	845
MroI	TCCGGA	1 cut(s)	794
MscI	TGGCCA	1 cut(s)	845
MseI	TTAA	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	845
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	8 cut(s)	36, 41, 312, 334, 413, 572, 620, 795
MspR9I	CCNGG	3 cut(s)	41, 572, 847
MvaI	CCWGG	1 cut(s)	847
MvnI	CGCG	4 cut(s)	81, 348, 504, 582
MwoI	GCNNNNNNNGC	4 cut(s)	114, 422, 591, 600
NarI	GGCGCC	3 cut(s)	84, 416, 594
NciI	CCSGG	2 cut(s)	41, 572
NdeII	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
NlaIII	CATG	2 cut(s)	58, 727
NlaIV	GGNNCC	4 cut(s)	85, 326, 417, 595
NmeAIII	GCCGAG	2 cut(s)	279, 757
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	727
PciI	ACATGT	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	146, 874
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	7 cut(s)	83, 263, 317, 320, 521, 584, 615
Ple19I	CGATCG	2 cut(s)	423, 552
PluTI	GGCGCC	3 cut(s)	87, 419, 597
PpuMI	RGGWCCY	1 cut(s)	324
PscI	ACATGT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	845
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	845
PspN4I	GGNNCC	4 cut(s)	85, 326, 417, 595
PspPI	GGNCC	5 cut(s)	38, 324, 336, 569, 706
PspPPI	RGGWCCY	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	557
PvuI	CGATCG	2 cut(s)	423, 552
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SacII	CCGCGG	1 cut(s)	82
SalI	GTCGAC	2 cut(s)	89, 242
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	7 cut(s)	82, 262, 316, 319, 520, 583, 614
Sau3AI	GATC	8 cut(s)	7, 57, 420, 430, 468, 475, 549, 889
Sau96I	GGNCC	5 cut(s)	38, 324, 336, 569, 706
ScrFI	CCNGG	3 cut(s)	41, 572, 847
SfaNI	GCATC	1 cut(s)	810
SfoI	GGCGCC	3 cut(s)	85, 417, 595
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	4 cut(s)	205, 350, 635, 784
SspDI	GGCGCC	3 cut(s)	83, 415, 593
SspMI	CTAG	1 cut(s)	921
StyD4I	CCNGG	3 cut(s)	39, 570, 845
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	7 cut(s)	90, 243, 429, 537, 548, 552, 877
TasI	AATT	4 cut(s)	205, 350, 635, 784
TauI	GCSGC	5 cut(s)	84, 264, 318, 321, 585
TfiI	GAWTC	2 cut(s)	146, 874
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	519, 613
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	668
TspGWI	ACGGA	1 cut(s)	4
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	727
XmiI	GTMKAC	2 cut(s)	90, 243
XspI	CTAG	1 cut(s)	921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.