Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

2727193 .. 2729656

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCGTCTGCTCTATGTAGAACTGCAAGCCGTCTTCGTTCCGTTCAACTTTTTCGTCGGATTCGCGTCTCCAGCGATCTACTATCGGCATCGTCTCCTTCTCCGGCGTGCATCTCCGACGCGCTTCGTCATGGAGATTTCTCTCTTCCTCGATCGTTTTTTTCACTTAACTGTGGAATCGAAATGCTGAAAATGGATCAGAGATGTTTGCTGAGTACTTCTGCTTCTGATACTACCTCGAAACATGACTCAGGTAAACCGGAAACAAAATCTTCGGAGAAAAATGAGAAATCTGGAGGATCGGAGAGTTCTGATGGTGGTTCAGATCATAAAAACGAGCGTGCTTCTGGAAAAGACGTTCGTGGAGGGCCGGTTTCATGGATGAGCTTTTTCTTGCTGTTTGCTACTGGAGCTGGATTGGTCTACTATTATGACACACAAAAGAAACGTCATATCGAAGATATAAATAAGAACTCTATAGCCGTCAAGGAGGGGCCATCTGCTGGAAAAGCAGCCATTGGAGGACCATTCAGCCTTATAAGAGACGATGGGAAACGTGTGACGGAGAAAAACTTGATGGGAAAATGGACCATTTTATACTTTGGTTTCACTCATTGTCCCGATATCTGTCCTGACGAACTTATTAAGTTAGCTGCTGCCATTGACAAAATAAAGGAAAATTCGGGAGTAGACGTGGTGCCAGTGTTTATCTCTGTGGACCCTGAAAGAGACACAGTTCAGCAAGTACATGAATATGTCAAAGAATTTCACCCGAAATTGATCGGGTTAACTGGGAGCCCTGAAGAAATCAAATCGGTGGCCCGATCTTACCGGGTTTACTACATGAAGACCGAAGAGGAAGATTCAGACTATCTCGTTGATCACTCTATAGTCATGTACTTGATGAGTCCGGAGATGAATTTTGTGAAATTCTACGGGAAGAATCACGATGTTGACTCGTTGACAGACGGCGTTGTAAAAGAGATCCGTCAGTACCGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

334

Amino Acids

37.19

Weight (kDa)

7.11

Isoelectric Point (pI)

51.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	174 - 308	1.8e-49	SCO1/SenC
AhpC-TSA	PF00578	177 - 294	4.3e-07	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	697
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccI	GTMKAC	2 cut(s)	423, 690
AccII	CGCG	2 cut(s)	66, 122
AccIII	TCCGGA	1 cut(s)	910
AclWI	GGATC	3 cut(s)	204, 307, 979
AcsI	RAATTY	4 cut(s)	679, 764, 919, 929
AcuI	CTGAAG	1 cut(s)	822
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	217, 747, 899, 995
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	694
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	3 cut(s)	387, 413, 653
AluI	AGCT	3 cut(s)	387, 413, 653
Alw26I	GTCTC	4 cut(s)	73, 99, 537, 723
AlwI	GGATC	3 cut(s)	204, 307, 979
Aor13HI	TCCGGA	1 cut(s)	910
AoxI	GGCC	3 cut(s)	368, 494, 819
ApeKI	GCWGC	3 cut(s)	512, 653, 656
ApoI	RAATTY	4 cut(s)	679, 764, 919, 929
ArsI	GACNNNNNNTTYG	2 cut(s)	433, 465
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	6 cut(s)	368, 494, 524, 588, 718, 820
AsuC2I	CCSGG	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	761
AvaII	GGWCC	3 cut(s)	524, 588, 718
BanI	GGYRCC	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	800
BarI	GAAGNNNNNNTAC	2 cut(s)	208, 240
BbsI	GAAGAC	2 cut(s)	26, 854
BbvI	GCAGC	3 cut(s)	524, 640, 643
BccI	CCATC	4 cut(s)	308, 505, 542, 571
BceAI	ACGGC	3 cut(s)	15, 467, 985
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	1 cut(s)	833
BcoDI	GTCTC	4 cut(s)	73, 99, 537, 723
BfmI	CTRYAG	2 cut(s)	477, 888
BisI	GCNGC	3 cut(s)	513, 654, 657
BlsI	GCNGC	3 cut(s)	514, 655, 658
BmcAI	AGTACT	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	833
Bme18I	GGWCC	3 cut(s)	524, 588, 718
BmgBI	CACGTC	1 cut(s)	694
BmgT120I	GGNCC	6 cut(s)	368, 494, 524, 588, 718, 820
BmiI	GGNNCC	4 cut(s)	495, 699, 720, 797
BmrFI	CCNGG	1 cut(s)	833
BmrI	ACTGGG	1 cut(s)	801
BmsI	GCATC	2 cut(s)	98, 120
BmuI	ACTGGG	1 cut(s)	801
BpiI	GAAGAC	2 cut(s)	26, 854
BpmI	CTGGAG	3 cut(s)	55, 315, 429
BpuMI	CCSGG	1 cut(s)	833
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	3 cut(s)	259, 910, 996
BsaXI	ACNNNNNCTCC	4 cut(s)	357, 387, 678, 708
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	3 cut(s)	412, 701, 796
BseAI	TCCGGA	1 cut(s)	910
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	2 cut(s)	203, 264
BseNI	ACTGG	3 cut(s)	412, 701, 796
BseXI	GCAGC	3 cut(s)	524, 640, 643
Bsh1236I	CGCG	2 cut(s)	66, 122
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	370, 496, 821
BshNI	GGYRCC	1 cut(s)	697
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	6 cut(s)	104, 260, 371, 832, 911, 997
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	4 cut(s)	73, 99, 537, 723
BsmBI	CGTCTC	3 cut(s)	73, 99, 537
BsmFI	GGGAC	1 cut(s)	603
BsnI	GGCC	3 cut(s)	370, 496, 821
Bsp1286I	GDGCHC	1 cut(s)	800
Bsp13I	TCCGGA	1 cut(s)	910
Bsp143I	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
BspANI	GGCC	3 cut(s)	370, 496, 821
BspCNI	CTCAG	2 cut(s)	204, 263
BspEI	TCCGGA	1 cut(s)	910
BspFNI	CGCG	2 cut(s)	66, 122
BspLI	GGNNCC	4 cut(s)	495, 699, 720, 797
BspPI	GGATC	3 cut(s)	204, 307, 979
BspT107I	GGYRCC	1 cut(s)	697
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	412, 701, 796
BssAI	RCCGGY	1 cut(s)	370
BssMI	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	173, 736
Bst6I	CTCTTC	2 cut(s)	150, 849
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	28, 109, 342
BstDEI	CTNAG	2 cut(s)	212, 250
BstF5I	GGATG	1 cut(s)	387
BstFNI	CGCG	2 cut(s)	66, 122
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	9 cut(s)	79, 155, 199, 302, 328, 783, 827, 883, 987
BstMAI	GTCTC	4 cut(s)	73, 99, 537, 723
BstMBI	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 410, 509
BstSCI	CCNGG	1 cut(s)	831
BstSFI	CTRYAG	2 cut(s)	477, 888
BstUI	CGCG	2 cut(s)	66, 122
BstV1I	GCAGC	3 cut(s)	524, 640, 643
BstV2I	GAAGAC	2 cut(s)	26, 854
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
BsuRI	GGCC	3 cut(s)	370, 496, 821
BtrI	CACGTC	1 cut(s)	694
BtsCI	GGATG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	3 cut(s)	28, 109, 342
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	6 cut(s)	368, 494, 524, 588, 718, 820
CseI	GACGC	2 cut(s)	55, 128
Csp6I	GTAC	4 cut(s)	216, 746, 898, 994
CviAII	CATG	6 cut(s)	131, 245, 378, 749, 844, 895
CviQI	GTAC	4 cut(s)	216, 746, 898, 994
DdeI	CTNAG	2 cut(s)	212, 250
DpnI	GATC	9 cut(s)	78, 154, 198, 301, 327, 782, 826, 882, 986
DpnII	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
Eam1104I	CTCTTC	2 cut(s)	150, 849
EarI	CTCTTC	2 cut(s)	150, 849
Eco24I	GRGCYC	1 cut(s)	800
Eco32I	GATATC	1 cut(s)	625
Eco47I	GGWCC	3 cut(s)	524, 588, 718
Eco57I	CTGAAG	1 cut(s)	822
EcoRV	GATATC	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	800
Esp3I	CGTCTC	3 cut(s)	73, 99, 537
FaeI	CATG	6 cut(s)	134, 248, 381, 752, 847, 898
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	6 cut(s)	130, 244, 377, 748, 843, 894
FbaI	TGATCA	1 cut(s)	880
FblI	GTMKAC	2 cut(s)	423, 690
Fnu4HI	GCNGC	3 cut(s)	513, 654, 657
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	800
Fsp4HI	GCNGC	3 cut(s)	513, 654, 657
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	513, 654, 657
GsuI	CTGGAG	3 cut(s)	55, 315, 429
HaeIII	GGCC	3 cut(s)	370, 496, 821
HapII	CCGG	6 cut(s)	104, 260, 371, 832, 911, 997
HgaI	GACGC	2 cut(s)	55, 128
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	134, 248, 381, 752, 847, 898
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	3 cut(s)	789, 955, 963
HindII	GTYRAC	3 cut(s)	789, 955, 963
HinfI	GANTC	7 cut(s)	61, 177, 248, 863, 907, 943, 956
HpaI	GTTAAC	1 cut(s)	789
HpaII	CCGG	6 cut(s)	104, 260, 371, 832, 911, 997
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	8 cut(s)	257, 424, 691, 718, 789, 838, 955, 963
Hpy188I	TCNGA	9 cut(s)	60, 118, 201, 229, 277, 304, 313, 325, 868
Hpy188III	TCNNGA	7 cut(s)	294, 348, 620, 632, 684, 911, 947
Hpy8I	GTNNAC	8 cut(s)	257, 424, 691, 718, 789, 838, 955, 963
Hpy99I	CGWCG	2 cut(s)	60, 122
HpyAV	CCTTC	1 cut(s)	108
HpyCH4III	ACNGT	2 cut(s)	173, 736
HpyCH4IV	ACGT	4 cut(s)	357, 448, 556, 693
HpyCH4V	TGCA	2 cut(s)	26, 111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 410, 509
HpyF3I	CTNAG	2 cut(s)	212, 250
HpySE526I	ACGT	4 cut(s)	357, 448, 556, 693
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	134, 248, 381, 752, 847, 898
HspAI	GCGC	1 cut(s)	122
Kpn2I	TCCGGA	1 cut(s)	910
Ksp22I	TGATCA	1 cut(s)	880
KspAI	GTTAAC	1 cut(s)	789
Kzo9I	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
LmnI	GCTCC	2 cut(s)	410, 795
Lsp1109I	GCAGC	3 cut(s)	524, 640, 643
LweI	GCATC	2 cut(s)	98, 120
MaeII	ACGT	4 cut(s)	357, 448, 556, 693
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	9 cut(s)	78, 154, 198, 301, 327, 782, 826, 882, 986
MboI	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
MboII	GAAGA	9 cut(s)	26, 137, 264, 470, 815, 859, 866, 872, 952
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	1 cut(s)	800
MluCI	AATT	5 cut(s)	679, 764, 776, 919, 929
MlyI	GAGTC	3 cut(s)	242, 916, 950
MmeI	TCCRAC	2 cut(s)	38, 141
MnlI	CCTC	7 cut(s)	159, 247, 290, 359, 484, 515, 850
MroI	TCCGGA	1 cut(s)	910
MseI	TTAA	3 cut(s)	168, 645, 788
MslI	CAYNNNNRTG	1 cut(s)	753
MspI	CCGG	6 cut(s)	104, 260, 371, 832, 911, 997
MspR9I	CCNGG	1 cut(s)	833
MvnI	CGCG	2 cut(s)	66, 122
MwoI	GCNNNNNNNGC	3 cut(s)	72, 410, 509
NciI	CCSGG	1 cut(s)	833
NdeII	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
NlaIII	CATG	6 cut(s)	134, 248, 381, 752, 847, 898
NlaIV	GGNNCC	4 cut(s)	495, 699, 720, 797
NmuCI	GTSAC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	61, 177, 863, 943
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	3 cut(s)	514, 655, 658
Ple19I	CGATCG	1 cut(s)	155
PleI	GAGTC	3 cut(s)	242, 915, 950
PpsI	GAGTC	3 cut(s)	242, 915, 950
PsiI	TTATAA	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	495, 699, 720, 797
PspPI	GGNCC	6 cut(s)	368, 494, 524, 588, 718, 820
PsuI	RGATCY	1 cut(s)	984
PvuI	CGATCG	1 cut(s)	155
RsaI	GTAC	4 cut(s)	217, 747, 899, 995
RsaNI	GTAC	4 cut(s)	216, 746, 898, 994
RseI	CAYNNNNRTG	1 cut(s)	753
SaqAI	TTAA	3 cut(s)	168, 645, 788
SatI	GCNGC	3 cut(s)	513, 654, 657
Sau3AI	GATC	9 cut(s)	76, 152, 196, 299, 325, 780, 824, 880, 984
Sau96I	GGNCC	6 cut(s)	368, 494, 524, 588, 718, 820
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	3 cut(s)	242, 916, 950
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	1 cut(s)	800
SetI	ASST	9 cut(s)	239, 256, 360, 389, 415, 451, 559, 655, 696
SfaNI	GCATC	2 cut(s)	98, 120
SfcI	CTRYAG	2 cut(s)	477, 888
SinI	GGWCC	3 cut(s)	524, 588, 718
SmiMI	CAYNNNNRTG	1 cut(s)	753
Sse9I	AATT	5 cut(s)	679, 764, 776, 919, 929
StyD4I	CCNGG	1 cut(s)	831
TaaI	ACNGT	2 cut(s)	173, 736
TaiI	ACGT	4 cut(s)	360, 451, 559, 696
TaqI	TCGA	4 cut(s)	151, 180, 239, 456
TaqII	GACCGA	1 cut(s)	866
TasI	AATT	5 cut(s)	679, 764, 776, 919, 929
TatI	WGTACW	3 cut(s)	215, 745, 897
TfiI	GAWTC	4 cut(s)	61, 177, 863, 943
Tru1I	TTAA	3 cut(s)	168, 645, 788
Tru9I	TTAA	3 cut(s)	168, 645, 788
TscAI	CASTG	1 cut(s)	708
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	512, 653, 656
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	4 cut(s)	366, 765, 860, 932
TspGWI	ACGGA	3 cut(s)	31, 578, 977
TspRI	CASTG	1 cut(s)	708
Van91I	CCANNNNNTGG	1 cut(s)	503
VpaK11BI	GGWCC	3 cut(s)	524, 588, 718
XapI	RAATTY	4 cut(s)	679, 764, 919, 929
XmiI	GTMKAC	2 cut(s)	423, 690
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.