Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

11416408 .. 11419063

Gene Structure 2656 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1061600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCGTCCATCATTTCCAGAACCGTAAACCATCTTCGCCACGTCAACCGCTCAGTGATCCGATCCGGATTGCCGATTCCACGGCCACCGCTCGCCGACTGTCTCCAAAATCGGCTTCCACTCCTCGGACAGTCGTTGACGATTTATCAAAGATGTCTTTTTTCGACGACACCCAATACTACGTCGGAAAAGCAAGGAAGCCCAGATCCCAAAACCTCAGAAAATGCAAATTCTGGTAATTCCGGTAAATCTGGTGATTCTGGTGAAGGGAGCAAATCTGGGGAATCAAGTGAAAGTAGTAATGCTGGAAAATCTATTCGCGGAGGGCCTGTTTCGTGGTTGAGTTTTCTGCTGCTGGTGGCGACTGGAGCCGGAATTGTACTCTATTACGATAAGGAAAAGAGACAACATATTGAAGAAATATTTAAAGCGTCAAAGGAAGTAAAGCAGGGACCATCTGTGGGAAAAGCTGCCATTGGGGGTCCATTCAATCTTATCAACCATGATGGGAAGCGAGTAACTGAAAAAGATTTTTTGGGGAAATGGACATTGATGTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTAGTAAAGCTAGCTGCTGCAGTTGATAAATTACAGAAAGATGCAGGGATTGAGATAGTACCCCTGTTCATATCCGTTGATCCTGAAAGAGATACCGTTGAGCAAGTCCGTGAATATGTGAAAGAGTTTCATCCAAAGCTGATGGGCTTAACCGGTAAACCGGATGAGATACGGAGTGTTGCTCGTGCATATCGTGTGTACTATATGAAGACAACAGAAGAAGATTCAGATTATCTTGTGGATCATTCCATAGTCATGTACTTGATGAGCCCCGAGATGGAATTCGTGAAATTTTTCGGGAAGAACAATGATGTCGATTCACTTGCTGAAGGTATAACAAAAGAGATAAGGCAGTACAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

321

Amino Acids

35.51

Weight (kDa)

7.66

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	160 - 294	4.7e-52	SCO1/SenC
AhpC-TSA	PF00578	163 - 281	1.1e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	51, 91
AccII	CGCG	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	3 cut(s)	49, 89, 321
AclWI	GGATC	5 cut(s)	52, 57, 200, 671, 846
AcoI	YGGCCR	1 cut(s)	83
AcsI	RAATTY	3 cut(s)	229, 878, 887
AcuI	CTGAAG	1 cut(s)	945
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	6 cut(s)	381, 557, 657, 797, 857, 953
AfiI	CCNNNNNNNGG	3 cut(s)	125, 461, 874
AgeI	ACCGGT	1 cut(s)	749
AgsI	TTSAA	2 cut(s)	416, 490
AjiI	CACGTC	1 cut(s)	43
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	4 cut(s)	470, 607, 611, 736
AluI	AGCT	4 cut(s)	470, 607, 611, 736
Alw26I	GTCTC	2 cut(s)	107, 397
AlwI	GGATC	5 cut(s)	52, 57, 200, 671, 846
Ama87I	CYCGRG	1 cut(s)	869
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	2 cut(s)	83, 326
ApeKI	GCWGC	4 cut(s)	352, 470, 611, 614
ApoI	RAATTY	3 cut(s)	229, 878, 887
AsiGI	ACCGGT	1 cut(s)	749
Asp700I	GAANNNNTTC	1 cut(s)	890
AspS9I	GGNCC	3 cut(s)	326, 452, 482
AsuHPI	GGTGA	2 cut(s)	266, 275
AsuNHI	GCTAGC	1 cut(s)	607
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	2 cut(s)	452, 482
BanII	GRGCYC	1 cut(s)	869
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BauI	CACGAG	1 cut(s)	780
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	4 cut(s)	339, 457, 598, 601
BccI	CCATC	6 cut(s)	17, 39, 463, 500, 733, 868
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	2 cut(s)	902, 936
BcoDI	GTCTC	2 cut(s)	107, 397
BfaI	CTAG	1 cut(s)	608
BfmI	CTRYAG	1 cut(s)	615
BisI	GCNGC	4 cut(s)	353, 471, 612, 615
BlsI	GCNGC	4 cut(s)	354, 472, 613, 616
Bme18I	GGWCC	2 cut(s)	452, 482
BmeT110I	CYCGRG	1 cut(s)	869
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	326, 452, 482
BmiI	GGNNCC	3 cut(s)	370, 453, 483
BmsI	GCATC	1 cut(s)	628
BmtI	GCTAGC	1 cut(s)	611
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	2 cut(s)	763, 795
BpmI	CTGGAG	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	80, 124
BsaWI	WCCGGW	4 cut(s)	65, 242, 749, 757
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 461, 874
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	80, 124
BseGI	GGATG	2 cut(s)	727, 766
BseLI	CCNNNNNNNGG	3 cut(s)	125, 461, 874
BseMII	CTCAG	2 cut(s)	66, 231
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	339, 457, 598, 601
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	85, 328
BshTI	ACCGGT	1 cut(s)	749
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	5 cut(s)	66, 243, 372, 750, 758
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	3 cut(s)	125, 461, 874
BsmAI	GTCTC	2 cut(s)	107, 397
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	85, 328
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	5 cut(s)	57, 62, 205, 676, 838
BspACI	CCGC	3 cut(s)	49, 89, 321
BspANI	GGCC	2 cut(s)	85, 328
BspCNI	CTCAG	2 cut(s)	65, 230
BspEI	TCCGGA	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	370, 453, 483
BspMAI	CTGCAG	1 cut(s)	619
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	5 cut(s)	52, 57, 200, 671, 846
BsrBI	CCGCTC	2 cut(s)	51, 91
BsrFI	RCCGGY	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	2 cut(s)	80, 124
BssMI	GATC	5 cut(s)	57, 62, 205, 676, 838
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	780
Bst4CI	ACNGT	4 cut(s)	25, 101, 132, 694
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	93, 609
BstDEI	CTNAG	2 cut(s)	52, 217
BstDSI	CCRYGG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	727, 766
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	5 cut(s)	60, 65, 208, 679, 841
BstMAI	GTCTC	2 cut(s)	107, 397
BstMBI	GATC	5 cut(s)	57, 62, 205, 676, 838
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	4 cut(s)	339, 457, 598, 601
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuRI	GGCC	2 cut(s)	85, 328
BtgI	CCRYGG	1 cut(s)	80
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	727, 766
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	2 cut(s)	60, 571
Cac8I	GCNNGC	2 cut(s)	93, 609
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	3 cut(s)	326, 452, 482
CseI	GACGC	1 cut(s)	420
Csp6I	GTAC	6 cut(s)	380, 556, 656, 796, 856, 952
CspAI	ACCGGT	1 cut(s)	749
CviAII	CATG	2 cut(s)	503, 853
CviQI	GTAC	6 cut(s)	380, 556, 656, 796, 856, 952
DdeI	CTNAG	2 cut(s)	52, 217
DpnI	GATC	5 cut(s)	59, 64, 207, 678, 840
DpnII	GATC	5 cut(s)	57, 62, 205, 676, 838
DraI	TTTAAA	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	869
Eco32I	GATATC	1 cut(s)	583
Eco47I	GGWCC	2 cut(s)	452, 482
Eco57I	CTGAAG	1 cut(s)	945
Eco88I	CYCGRG	1 cut(s)	869
EcoO109I	RGGNCCY	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	878
EcoRV	GATATC	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	869
FaeI	CATG	2 cut(s)	506, 856
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	2 cut(s)	502, 852
Fnu4HI	GCNGC	4 cut(s)	353, 471, 612, 615
FokI	GGATG	2 cut(s)	714, 773
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	4 cut(s)	353, 471, 612, 615
FspBI	CTAG	1 cut(s)	608
GluI	GCNGC	4 cut(s)	353, 471, 612, 615
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	2 cut(s)	85, 328
HapII	CCGG	5 cut(s)	66, 243, 372, 750, 758
HgaI	GACGC	1 cut(s)	420
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	506, 856
HincII	GTYRAC	2 cut(s)	46, 138
HindII	GTYRAC	2 cut(s)	46, 138
HinfI	GANTC	5 cut(s)	76, 257, 284, 821, 914
HpaII	CCGG	5 cut(s)	66, 243, 372, 750, 758
HphI	GGTGA	2 cut(s)	266, 275
Hpy166II	GTNNAC	5 cut(s)	28, 46, 138, 755, 796
Hpy188I	TCNGA	5 cut(s)	62, 128, 187, 220, 826
Hpy188III	TCNNGA	5 cut(s)	18, 66, 680, 883, 895
Hpy8I	GTNNAC	5 cut(s)	28, 46, 138, 755, 796
Hpy99I	CGWCG	2 cut(s)	169, 187
HpyAV	CCTTC	2 cut(s)	260, 920
HpyCH4III	ACNGT	4 cut(s)	25, 101, 132, 694
HpyCH4IV	ACGT	2 cut(s)	42, 182
HpyCH4V	TGCA	4 cut(s)	227, 617, 641, 785
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	52, 217
HpySE526I	ACGT	2 cut(s)	42, 182
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	506, 856
Kpn2I	TCCGGA	1 cut(s)	65
Kzo9I	GATC	5 cut(s)	57, 62, 205, 676, 838
LmnI	GCTCC	2 cut(s)	270, 368
Lsp1109I	GCAGC	4 cut(s)	339, 457, 598, 601
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	608
MaeII	ACGT	2 cut(s)	42, 182
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	5 cut(s)	59, 64, 207, 678, 840
MbiI	CCGCTC	2 cut(s)	51, 91
MboI	GATC	5 cut(s)	57, 62, 205, 676, 838
MboII	GAAGA	6 cut(s)	26, 428, 817, 827, 830, 910
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	869
MluCI	AATT	6 cut(s)	229, 238, 375, 626, 878, 887
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	134, 226, 317
MroI	TCCGGA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	2 cut(s)	426, 746
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	5 cut(s)	66, 243, 372, 750, 758
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	5 cut(s)	57, 62, 205, 676, 838
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	2 cut(s)	506, 856
NlaIV	GGNNCC	3 cut(s)	370, 453, 483
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	5 cut(s)	76, 257, 284, 821, 914
PinAI	ACCGGT	1 cut(s)	749
PkrI	GCNGC	4 cut(s)	354, 472, 613, 616
PspN4I	GGNNCC	3 cut(s)	370, 453, 483
PspPI	GGNCC	3 cut(s)	326, 452, 482
PstI	CTGCAG	1 cut(s)	619
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	6 cut(s)	381, 557, 657, 797, 857, 953
RsaNI	GTAC	6 cut(s)	380, 556, 656, 796, 856, 952
RseI	CAYNNNNRTG	1 cut(s)	851
SaqAI	TTAA	2 cut(s)	426, 746
SatI	GCNGC	4 cut(s)	353, 471, 612, 615
Sau3AI	GATC	5 cut(s)	57, 62, 205, 676, 838
Sau96I	GGNCC	3 cut(s)	326, 452, 482
SduI	GDGCHC	1 cut(s)	869
SetI	ASST	8 cut(s)	45, 185, 218, 472, 609, 613, 738, 931
SfaNI	GCATC	1 cut(s)	628
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	2 cut(s)	452, 482
SmiMI	CAYNNNNRTG	1 cut(s)	851
Sse9I	AATT	6 cut(s)	229, 238, 375, 626, 878, 887
SsiI	CCGC	3 cut(s)	49, 89, 321
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	1 cut(s)	608
TaaI	ACNGT	4 cut(s)	25, 101, 132, 694
TaiI	ACGT	2 cut(s)	45, 185
TaqI	TCGA	2 cut(s)	164, 912
TasI	AATT	6 cut(s)	229, 238, 375, 626, 878, 887
TatI	WGTACW	5 cut(s)	379, 555, 795, 855, 951
TfiI	GAWTC	5 cut(s)	76, 257, 284, 821, 914
Tru1I	TTAA	2 cut(s)	426, 746
Tru9I	TTAA	2 cut(s)	426, 746
TscAI	CASTG	2 cut(s)	60, 578
TseI	GCWGC	4 cut(s)	352, 470, 611, 614
TspDTI	ATGAA	3 cut(s)	655, 716, 818
TspGWI	ACGGA	3 cut(s)	661, 695, 784
TspRI	CASTG	2 cut(s)	60, 578
VpaK11BI	GGWCC	2 cut(s)	452, 482
XapI	RAATTY	3 cut(s)	229, 878, 887
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.