Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000125.1

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

44413 .. 52372

Gene Structure 7960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000125.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgccaacaagaggtattcctgagcaaaatggtgggaagcgttgtggttattggataatgcgttacatgaaggagatagttgaagacaagaatttggagtttgctactaagtgggacagaagaacaaatcttgtttacacagaacaagatattgatgaagttcgagctgaatgggcgaagcatgccgcctacaggtcgccaccgtatctcccaatgctcaggattgtgaagcatcttcggcacgcaaatcgatctttggtgagatgtgggctgccagtgctatcgcctccactcactgagggtcttcagcatcagcatcttccactccttcaacagtcgttgacgatttatcaaagatgtctattttcaacaactaccactgcttctgcaaatcaaggagaatcaaaatcaaaaacttctgaaaaagctaattctgatgaagggagcaagtccggggaatcacatgaaagcagtaatgctggaaaatctgtccgtggagggcctgtttcgtggttgagctttttgttgctcatagcaactggggcaggaatcatcctctactatgacaaggaaaagagacagcatattcaagacatatttaatgcatccaaggaggtaaagcaaggaccatctgcgggattagctgctattggaggtccattcaatcttatcaaccacgatgggaagcgtgtaactgaaaaagactttctggggaaatggacgttaatctactttggtttcactcactgccctgatatctgcccagatgagttacagaaattagccactgcagttgataaaataaaggaaaatgcagggattgagatagtccccgtgttcatctctgttgatcctgaaagagatactgttgagcaagtccgtgaatatgtcaaagagtttcatccaaggttgattgggttaacgggtaactcggatgagatacacagtgtggcccgtgcctatcgtgtatattatatgaagacaacagaagaagattcagattaccttgttgatcattctatagtcatgtacttgatgagccctactatggactttgttaaattttttgggaagaacaatgatgttgattcacttgctgatggcataaccaaagagataaagcagtacaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

378

Amino Acids

42.81

Weight (kDa)

7.19

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	186, 635
AclWI	GGATC	1 cut(s)	845
AcsI	RAATTY	2 cut(s)	91, 1061
AcuI	CTGAAG	1 cut(s)	290
AdeI	CACNNNGTG	1 cut(s)	949
AfaI	GTAC	2 cut(s)	1031, 1127
AfiI	CCNNNNNNNGG	4 cut(s)	11, 192, 635, 1048
AgsI	TTSAA	5 cut(s)	83, 332, 369, 590, 664
AluBI	AGCT	4 cut(s)	167, 428, 519, 644
AluI	AGCT	4 cut(s)	167, 428, 519, 644
Alw26I	GTCTC	1 cut(s)	571
AlwI	GGATC	1 cut(s)	845
AoxI	GGCC	2 cut(s)	500, 951
ApeKI	GCWGC	2 cut(s)	271, 644
ApoI	RAATTY	2 cut(s)	91, 1061
AspS9I	GGNCC	4 cut(s)	500, 626, 656, 952
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	626, 656
BanII	GRGCYC	1 cut(s)	1043
BbsI	GAAGAC	3 cut(s)	90, 296, 986
BbvI	GCAGC	2 cut(s)	258, 631
BccI	CCATC	3 cut(s)	637, 674, 1094
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	1 cut(s)	571
BfmI	CTRYAG	3 cut(s)	190, 789, 1020
BisI	GCNGC	3 cut(s)	186, 272, 645
BlsI	GCNGC	3 cut(s)	187, 273, 646
Bme1390I	CCNGG	1 cut(s)	454
Bme18I	GGWCC	2 cut(s)	626, 656
BmgT120I	GGNCC	4 cut(s)	500, 626, 656, 952
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	4 cut(s)	241, 319, 325, 614
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	3 cut(s)	90, 296, 986
Bpu10I	CCTNAGC	2 cut(s)	21, 218
BpuMI	CCSGG	1 cut(s)	454
Bsa29I	ATCGAT	1 cut(s)	250
BsaJI	CCNNGG	4 cut(s)	453, 493, 609, 905
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 489, 519
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 192, 635, 1048
Bse1I	ACTGG	2 cut(s)	275, 544
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	4 cut(s)	453, 493, 609, 905
BseGI	GGATG	4 cut(s)	552, 605, 901, 940
BseLI	CCNNNNNNNGG	4 cut(s)	11, 192, 635, 1048
BseMII	CTCAG	3 cut(s)	12, 232, 288
BseNI	ACTGG	2 cut(s)	275, 544
BseXI	GCAGC	2 cut(s)	258, 631
BshFI	GGCC	2 cut(s)	502, 953
BshVI	ATCGAT	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	2 cut(s)	128, 815
BslI	CCNNNNNNNGG	4 cut(s)	11, 192, 635, 1048
BsmAI	GTCTC	1 cut(s)	571
BsmFI	GGGAC	2 cut(s)	128, 815
BsnI	GGCC	2 cut(s)	502, 953
Bsp1286I	GDGCHC	1 cut(s)	1043
Bsp143I	GATC	3 cut(s)	251, 850, 1012
BspACI	CCGC	2 cut(s)	186, 635
BspANI	GGCC	2 cut(s)	502, 953
BspCNI	CTCAG	3 cut(s)	13, 231, 289
BspDI	ATCGAT	1 cut(s)	250
BspMAI	CTGCAG	1 cut(s)	793
BspPI	GGATC	1 cut(s)	845
BsrI	ACTGG	2 cut(s)	275, 544
BssECI	CCNNGG	4 cut(s)	453, 493, 609, 905
BssMI	GATC	3 cut(s)	251, 850, 1012
BssT1I	CCWWGG	2 cut(s)	609, 905
Bst4CI	ACNGT	4 cut(s)	204, 336, 868, 947
BstC8I	GCNNGC	2 cut(s)	183, 243
BstDEI	CTNAG	4 cut(s)	21, 108, 218, 297
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	4 cut(s)	552, 605, 901, 940
BstKTI	GATC	3 cut(s)	254, 853, 1015
BstMAI	GTCTC	1 cut(s)	571
BstMBI	GATC	3 cut(s)	251, 850, 1012
BstMWI	GCNNNNNNNGC	6 cut(s)	173, 182, 238, 277, 542, 641
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	3 cut(s)	190, 789, 1020
BstV1I	GCAGC	2 cut(s)	258, 631
BstV2I	GAAGAC	3 cut(s)	90, 296, 986
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	502, 953
BsuTUI	ATCGAT	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	493
BtsCI	GGATG	4 cut(s)	552, 605, 901, 940
BtsI	GCAGTG	3 cut(s)	378, 745, 786
BtsIMutI	CAGTG	6 cut(s)	282, 294, 378, 745, 786, 952
Cac8I	GCNNGC	2 cut(s)	183, 243
Cfr13I	GGNCC	4 cut(s)	500, 626, 656, 952
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	1030, 1126
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	4 cut(s)	67, 182, 464, 1027
CviJI	RGCY	9 cut(s)	167, 271, 428, 502, 519, 644, 785, 953, 1041
CviKI_1	RGCY	9 cut(s)	167, 271, 428, 502, 519, 644, 785, 953, 1041
CviQI	GTAC	2 cut(s)	1030, 1126
DdeI	CTNAG	4 cut(s)	21, 108, 218, 297
DpnI	GATC	3 cut(s)	253, 852, 1014
DpnII	GATC	3 cut(s)	251, 850, 1012
DraIII	CACNNNGTG	1 cut(s)	949
Eco130I	CCWWGG	2 cut(s)	609, 905
Eco24I	GRGCYC	1 cut(s)	1043
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	2 cut(s)	626, 656
Eco57I	CTGAAG	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	2 cut(s)	609, 905
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	1043
ErhI	CCWWGG	2 cut(s)	609, 905
FaeI	CATG	4 cut(s)	70, 185, 467, 1030
FaqI	GGGAC	2 cut(s)	128, 815
FatI	CATG	4 cut(s)	66, 181, 463, 1026
FauI	CCCGC	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	3 cut(s)	186, 272, 645
FokI	GGATG	4 cut(s)	539, 592, 888, 947
FriOI	GRGCYC	1 cut(s)	1043
Fsp4HI	GCNGC	3 cut(s)	186, 272, 645
GluI	GCNGC	3 cut(s)	186, 272, 645
HaeIII	GGCC	2 cut(s)	502, 953
HapII	CCGG	1 cut(s)	453
Hin1II	CATG	4 cut(s)	70, 185, 467, 1030
HincII	GTYRAC	2 cut(s)	342, 921
HindII	GTYRAC	2 cut(s)	342, 921
HinfI	GANTC	5 cut(s)	401, 458, 549, 995, 1088
HpaI	GTTAAC	1 cut(s)	921
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	3 cut(s)	136, 342, 921
Hpy188I	TCNGA	4 cut(s)	421, 436, 934, 1000
Hpy188III	TCNNGA	4 cut(s)	20, 220, 590, 854
Hpy8I	GTNNAC	3 cut(s)	136, 342, 921
HpyAV	CCTTC	3 cut(s)	64, 338, 434
HpyCH4III	ACNGT	4 cut(s)	204, 336, 868, 947
HpyCH4IV	ACGT	1 cut(s)	722
HpyCH4V	TGCA	4 cut(s)	389, 605, 791, 815
HpyF10VI	GCNNNNNNNGC	6 cut(s)	173, 182, 238, 277, 542, 641
HpyF3I	CTNAG	4 cut(s)	21, 108, 218, 297
HpySE526I	ACGT	1 cut(s)	722
Hsp92II	CATG	4 cut(s)	70, 185, 467, 1030
Ksp22I	TGATCA	1 cut(s)	1012
KspAI	GTTAAC	1 cut(s)	921
Kzo9I	GATC	3 cut(s)	251, 850, 1012
LmnI	GCTCC	1 cut(s)	444
Lsp1109I	GCAGC	2 cut(s)	258, 631
LweI	GCATC	4 cut(s)	241, 319, 325, 614
MaeII	ACGT	1 cut(s)	722
MaeIII	GTNAC	4 cut(s)	62, 691, 771, 926
MalI	GATC	3 cut(s)	253, 852, 1014
MboI	GATC	3 cut(s)	251, 850, 1012
MboII	GAAGA	9 cut(s)	95, 132, 227, 296, 311, 991, 1001, 1004, 1084
MhlI	GDGCHC	1 cut(s)	1043
MluCI	AATT	4 cut(s)	91, 430, 779, 1061
MnlI	CCTC	7 cut(s)	5, 292, 297, 491, 566, 607, 647
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	4 cut(s)	600, 725, 920, 1059
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	6 cut(s)	173, 182, 238, 277, 542, 641
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	251, 850, 1012
NlaIII	CATG	4 cut(s)	70, 185, 467, 1030
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	185
PfeI	GAWTC	5 cut(s)	401, 458, 549, 995, 1088
PkrI	GCNGC	3 cut(s)	187, 273, 646
PspPI	GGNCC	4 cut(s)	500, 626, 656, 952
PstI	CTGCAG	1 cut(s)	793
RsaI	GTAC	2 cut(s)	1031, 1127
RsaNI	GTAC	2 cut(s)	1030, 1126
SaqAI	TTAA	4 cut(s)	600, 725, 920, 1059
SatI	GCNGC	3 cut(s)	186, 272, 645
Sau3AI	GATC	3 cut(s)	251, 850, 1012
Sau96I	GGNCC	4 cut(s)	500, 626, 656, 952
ScrFI	CCNGG	1 cut(s)	454
SduI	GDGCHC	1 cut(s)	1043
SfaNI	GCATC	4 cut(s)	241, 319, 325, 614
SfcI	CTRYAG	3 cut(s)	190, 789, 1020
SinI	GGWCC	2 cut(s)	626, 656
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	4 cut(s)	91, 430, 779, 1061
SsiI	CCGC	2 cut(s)	186, 635
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	2 cut(s)	609, 905
TaaI	ACNGT	4 cut(s)	204, 336, 868, 947
TaiI	ACGT	1 cut(s)	725
TaqI	TCGA	2 cut(s)	163, 250
TasI	AATT	4 cut(s)	91, 430, 779, 1061
TatI	WGTACW	2 cut(s)	1029, 1125
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	5 cut(s)	401, 458, 549, 995, 1088
Tru1I	TTAA	4 cut(s)	600, 725, 920, 1059
Tru9I	TTAA	4 cut(s)	600, 725, 920, 1059
TscAI	CASTG	6 cut(s)	282, 301, 385, 752, 793, 952
TseI	GCWGC	2 cut(s)	271, 644
TspDTI	ATGAA	7 cut(s)	83, 171, 453, 480, 829, 890, 992
TspGWI	ACGGA	2 cut(s)	482, 869
TspRI	CASTG	6 cut(s)	282, 301, 385, 752, 793, 952
VpaK11BI	GGWCC	2 cut(s)	626, 656
XapI	RAATTY	2 cut(s)	91, 1061
XceI	RCATGY	1 cut(s)	185
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.