Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

17114464 .. 17116755

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g14250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGTCCATCATTTGCAGAACCGTAAACCATCTCCGCCACGTCAACCGCTCAGTTTTAACAGATCCGATCCGGATTGCGGATTCCACGGCCACCGCTCGCCGACTGTCTCCAAAATCGGCATCTTCCACTCCTCGGACAGCTCGATCGTTGACGATTTATCAAAGATGTCTTTTTTCGACGACACCCAATACTACGACGGAAAATCAAAGAAACCCAGAACCCAAAACCACGGAAAATGAAAATTCTGGTAATTCTGGTAAATCTGGTGAATCTGGTGAAGGGAGCAAATCTGGGGAATCAAGTGAAAGTAGTAATGCTGGGAAATCTATTCGCGGAGGGCCTGTTTCGTGGTTGAGTTTTCTGCTGCTGGTGGCGACTGGAGCCGGAATTATACTCTATTACGACAAGGAAAAGAGACAACATATTGAAGAAATATTTAAAGCGTCAAAGGAAGTAAAGCAGGGACCATCTGTGGGAAAAGCTGCCATTGGGGGTCCATTCAATCTTATCAACCATGATGGGAAGCGAGTAACTGAAAAGGATTTTTTGGGGAAATGGACATTGATGTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTAGTAAAGCTAGCTGCTGCAGTTGATAAATTACAGAAAGATGCAGGGATTGAGATAGTACCCCTGTTCATATCCGTTGATCCTGAAAGAGATACCGTTGAGCAAGTCCGTGAATATGTGAAAGAGTTTCATCCAAAGCTGATTGGCTTAACTGGTAAACCGGATGAAATACGGAGTGTTGCTCGTGCATATCGTGTGTACTATATGAAGACAACAGAAGAAGATTCAGATTATCTTGTGGATCATTCCATAGTCATGTACTTGATGAGCCCCGAGATGGAATTCGTGAAATTTTTCGGGAAGAACAATGATGTCGATTCACTTGCTGAAGGTATAACAAAAGAGATAAAGCAGCACAAAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

326

Amino Acids

36.15

Weight (kDa)

8.19

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	51, 98
AccII	CGCG	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	5 cut(s)	37, 49, 80, 96, 336
AclWI	GGATC	4 cut(s)	59, 64, 686, 861
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	244, 893, 902
AcuI	CTGAAG	1 cut(s)	960
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	4 cut(s)	572, 672, 812, 872
AfiI	CCNNNNNNNGG	4 cut(s)	79, 135, 476, 889
AgsI	TTSAA	2 cut(s)	431, 505
AjiI	CACGTC	1 cut(s)	43
AluBI	AGCT	5 cut(s)	143, 485, 622, 626, 751
AluI	AGCT	5 cut(s)	143, 485, 622, 626, 751
Alw26I	GTCTC	2 cut(s)	114, 412
AlwI	GGATC	4 cut(s)	59, 64, 686, 861
Ama87I	CYCGRG	1 cut(s)	884
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	2 cut(s)	90, 341
ApeKI	GCWGC	5 cut(s)	367, 485, 626, 629, 964
ApoI	RAATTY	3 cut(s)	244, 893, 902
Asp700I	GAANNNNTTC	1 cut(s)	905
AspS9I	GGNCC	3 cut(s)	341, 467, 497
AsuHPI	GGTGA	2 cut(s)	281, 290
AsuNHI	GCTAGC	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	884
AvaII	GGWCC	2 cut(s)	467, 497
BanII	GRGCYC	1 cut(s)	884
BauI	CACGAG	1 cut(s)	795
BbsI	GAAGAC	1 cut(s)	827
BbvI	GCAGC	4 cut(s)	354, 472, 613, 616
BccI	CCATC	5 cut(s)	17, 39, 478, 515, 883
BceAI	ACGGC	1 cut(s)	105
BcgI	CGANNNNNNTGC	2 cut(s)	917, 951
BcoDI	GTCTC	2 cut(s)	114, 412
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	630
BisI	GCNGC	5 cut(s)	368, 486, 627, 630, 965
BlsI	GCNGC	5 cut(s)	369, 487, 628, 631, 966
Bme18I	GGWCC	2 cut(s)	467, 497
BmeT110I	CYCGRG	1 cut(s)	884
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	341, 467, 497
BmiI	GGNNCC	3 cut(s)	385, 468, 498
BmsI	GCATC	2 cut(s)	131, 643
BmtI	GCTAGC	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	827
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
BpmI	CTGGAG	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	87, 134, 231
BsaWI	WCCGGW	2 cut(s)	72, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 135, 476, 889
Bse1I	ACTGG	2 cut(s)	385, 769
BseAI	TCCGGA	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	87, 134, 231
BseGI	GGATG	2 cut(s)	742, 781
BseLI	CCNNNNNNNGG	4 cut(s)	79, 135, 476, 889
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	385, 769
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	4 cut(s)	354, 472, 613, 616
BseYI	CCCAGC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	2 cut(s)	92, 343
BsiEI	CGRYCG	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	884
BsiSI	CCGG	3 cut(s)	73, 387, 773
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	4 cut(s)	79, 135, 476, 889
BsmAI	GTCTC	2 cut(s)	114, 412
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	92, 343
BsoBI	CYCGRG	1 cut(s)	884
Bsp1286I	GDGCHC	1 cut(s)	884
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	64, 69, 146, 691, 853
BspACI	CCGC	5 cut(s)	37, 49, 80, 96, 336
BspANI	GGCC	2 cut(s)	92, 343
BspCNI	CTCAG	1 cut(s)	65
BspEI	TCCGGA	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	3 cut(s)	385, 468, 498
BspMAI	CTGCAG	1 cut(s)	634
BspOI	GCTAGC	1 cut(s)	626
BspPI	GGATC	4 cut(s)	59, 64, 686, 861
BsrBI	CCGCTC	2 cut(s)	51, 98
BsrI	ACTGG	2 cut(s)	385, 769
BssECI	CCNNGG	3 cut(s)	87, 134, 231
BssMI	GATC	5 cut(s)	64, 69, 146, 691, 853
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	795
Bst2BI	CACGAG	1 cut(s)	795
Bst4CI	ACNGT	3 cut(s)	25, 108, 709
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	100, 624
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	2 cut(s)	87, 231
BstF5I	GGATG	2 cut(s)	742, 781
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	5 cut(s)	67, 72, 149, 694, 856
BstMAI	GTCTC	2 cut(s)	114, 412
BstMBI	GATC	5 cut(s)	64, 69, 146, 691, 853
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	354, 472, 613, 616
BstV2I	GAAGAC	1 cut(s)	827
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	92, 343
BtgI	CCRYGG	2 cut(s)	87, 231
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	742, 781
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	586
Cac8I	GCNNGC	2 cut(s)	100, 624
Cfr13I	GGNCC	3 cut(s)	341, 467, 497
CseI	GACGC	1 cut(s)	435
Csp6I	GTAC	4 cut(s)	571, 671, 811, 871
CviAII	CATG	2 cut(s)	518, 868
CviQI	GTAC	4 cut(s)	571, 671, 811, 871
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	5 cut(s)	66, 71, 148, 693, 855
DpnII	GATC	5 cut(s)	64, 69, 146, 691, 853
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	884
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	2 cut(s)	467, 497
Eco57I	CTGAAG	1 cut(s)	960
Eco88I	CYCGRG	1 cut(s)	884
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	893
EcoRV	GATATC	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	884
FaeI	CATG	2 cut(s)	521, 871
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	2 cut(s)	517, 867
Fnu4HI	GCNGC	5 cut(s)	368, 486, 627, 630, 965
FokI	GGATG	2 cut(s)	729, 788
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	5 cut(s)	368, 486, 627, 630, 965
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	5 cut(s)	368, 486, 627, 630, 965
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	92, 343
HapII	CCGG	3 cut(s)	73, 387, 773
HgaI	GACGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	521, 871
HincII	GTYRAC	2 cut(s)	46, 153
HindII	GTYRAC	2 cut(s)	46, 153
HinfI	GANTC	5 cut(s)	83, 272, 299, 836, 929
HpaII	CCGG	3 cut(s)	73, 387, 773
HphI	GGTGA	2 cut(s)	281, 290
Hpy166II	GTNNAC	5 cut(s)	28, 46, 153, 770, 811
Hpy188I	TCNGA	3 cut(s)	69, 138, 841
Hpy188III	TCNNGA	4 cut(s)	73, 695, 898, 910
Hpy8I	GTNNAC	5 cut(s)	28, 46, 153, 770, 811
Hpy99I	CGWCG	2 cut(s)	184, 202
HpyAV	CCTTC	2 cut(s)	275, 935
HpyCH4III	ACNGT	3 cut(s)	25, 108, 709
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	18, 632, 656, 800
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	521, 871
Kpn2I	TCCGGA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	64, 69, 146, 691, 853
LmnI	GCTCC	2 cut(s)	285, 383
Lsp1109I	GCAGC	4 cut(s)	354, 472, 613, 616
LweI	GCATC	2 cut(s)	131, 643
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	5 cut(s)	66, 71, 148, 693, 855
MbiI	CCGCTC	2 cut(s)	51, 98
MboI	GATC	5 cut(s)	64, 69, 146, 691, 853
MboII	GAAGA	6 cut(s)	117, 443, 832, 842, 845, 925
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	884
MluCI	AATT	6 cut(s)	244, 253, 390, 641, 893, 902
MnlI	CCTC	2 cut(s)	144, 332
MroI	TCCGGA	1 cut(s)	72
MroXI	GAANNNNTTC	1 cut(s)	905
MseI	TTAA	3 cut(s)	59, 441, 761
MslI	CAYNNNNRTG	1 cut(s)	866
MspI	CCGG	3 cut(s)	73, 387, 773
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	5 cut(s)	64, 69, 146, 691, 853
NheI	GCTAGC	1 cut(s)	622
NlaIII	CATG	2 cut(s)	521, 871
NlaIV	GGNNCC	3 cut(s)	385, 468, 498
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 802
PdmI	GAANNNNTTC	1 cut(s)	905
PfeI	GAWTC	5 cut(s)	83, 272, 299, 836, 929
PkrI	GCNGC	5 cut(s)	369, 487, 628, 631, 966
Ple19I	CGATCG	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	3 cut(s)	385, 468, 498
PspPI	GGNCC	3 cut(s)	341, 467, 497
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	1 cut(s)	64
PvuI	CGATCG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	572, 672, 812, 872
RsaNI	GTAC	4 cut(s)	571, 671, 811, 871
RseI	CAYNNNNRTG	1 cut(s)	866
SaqAI	TTAA	3 cut(s)	59, 441, 761
SatI	GCNGC	5 cut(s)	368, 486, 627, 630, 965
Sau3AI	GATC	5 cut(s)	64, 69, 146, 691, 853
Sau96I	GGNCC	3 cut(s)	341, 467, 497
SduI	GDGCHC	1 cut(s)	884
SetI	ASST	7 cut(s)	45, 145, 487, 624, 628, 753, 946
SfaNI	GCATC	2 cut(s)	131, 643
SfcI	CTRYAG	1 cut(s)	630
SinI	GGWCC	2 cut(s)	467, 497
SmiMI	CAYNNNNRTG	1 cut(s)	866
Sse9I	AATT	6 cut(s)	244, 253, 390, 641, 893, 902
SsiI	CCGC	5 cut(s)	37, 49, 80, 96, 336
SspI	AATATT	1 cut(s)	438
SspMI	CTAG	1 cut(s)	623
TaaI	ACNGT	3 cut(s)	25, 108, 709
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	3 cut(s)	145, 179, 927
TasI	AATT	6 cut(s)	244, 253, 390, 641, 893, 902
TatI	WGTACW	3 cut(s)	570, 810, 870
TfiI	GAWTC	5 cut(s)	83, 272, 299, 836, 929
Tru1I	TTAA	3 cut(s)	59, 441, 761
Tru9I	TTAA	3 cut(s)	59, 441, 761
TscAI	CASTG	1 cut(s)	593
TseI	GCWGC	5 cut(s)	367, 485, 626, 629, 964
TspDTI	ATGAA	5 cut(s)	255, 670, 731, 792, 833
TspGWI	ACGGA	5 cut(s)	215, 248, 676, 710, 799
TspRI	CASTG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	467, 497
XapI	RAATTY	3 cut(s)	244, 893, 902
XmnI	GAANNNNTTC	1 cut(s)	905
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.