Rorug07G0163800

Protein SCO1 homolog 1

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
13148181 .. 13149245
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0163800.1

Sequence Viewer

Length: 1065 bp
ATGGCTCTTCTCCAACAACGTCGCAAGATCCCCTCCTTGTCTTTAGCCTCCACCGCCGTCCACCACCGCCCAATTCTCTCCCTACAAACCATCCCTCGCCCCGCCGTCACCACCACCATCACCTCCTCCTCTTCCACAGCACCCATCTCCGCCTCAGACCTAGAGCGACTCCAAGTCTTGGGCCACGGCAGCGGCGGCACCGTCTACAAGGTCCTTCACAAGCCCACTTCCACCCCTTACGCTCTCAAACAACTCCACTCGCCGGCTGCTGACTCCTCCTCCGATAACAACCCACTTCAGAGTGAACTCGACATCCTCCGCCGCACAACTGGCTCTCCCTACGTCGTCCACTGCCACGCCATCTTCGAGAAGCCCTCCGGAGACGTGTCGGTTCTCATGGAGTACATGGACTTGGGTTCTCTTGAAACCTTGCTCAAGTCCCAAGGTCCCTTCTCCGAAGAAAAGCTTGCCCCCATCGCACGCCAAGTCCTCGAAGGCCTCGACTACCTTCACAAGACTCACAAGATTGTTCATCGCGACATCAAGCCCGGGAATCTTTTAATGAACAACAAGAAGGAGGTCAAGATCGCCGACTTTGGTTGCAGTAGTGACGAGTCTTGCAGTTCCTCTGTGGGGACTTGTGCTTATATGAGCCCGGAGCGGTTTGATCCGGAGAGATACGGTGGAAGTCACAATGGCTATGCCAGTGATATATGGAGCTTTGGGGTGACTATAATGGAACTCTACGTGGGTTACTTCCCCTTGCTCCCCAAGGGTCAGAGACCGAACTGGGCATCCCTTATGTGCGCTATCTGTTTCGGAGAGGTGCCGTGCTTGCCGGAGGGTGCGTCGGAAGACTTTCGGAGCTTTCTTGAGTGCTGCATGCACAAGGAGGCCTCCAAGAGGTGGACAGCGGCTCAACTTTTGACCCACCCGTTCGTCTGCAAGGCTCCATCCGAGGAATGCAAGCCAAACTTGTTCGACAAGAAAAGAAAACGTGATGATGATGGCGTTGAGCGAAGTGAGAGATCTCAAAAATCAATCAAGGTTGAAGTAGTATGTTAG

Protein Analysis

354

Amino Acids

39.13

Weight (kDa)

7.57

Isoelectric Point (pI)

62.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 55 - 314 1.6e-58 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 55 - 309 5.9e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013096)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 197, 826
AccB7I CCANNNNNTGG 2 cut(s) 178, 906
AccBSI CCGCTC 1 cut(s) 661
AccI GTMKAC 1 cut(s) 204
AccII CGCG 1 cut(s) 537
AccIII TCCGGA 2 cut(s) 377, 670
AclWI GGATC 2 cut(s) 22, 662
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 5 cut(s) 178, 262, 633, 903, 906
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 2 cut(s) 425, 1052
AhdI GACNNNNNGTC 1 cut(s) 173
AjiI CACGTC 1 cut(s) 385
AloI GAACNNNNNNTCC 4 cut(s) 297, 329, 779, 811
AluBI AGCT 3 cut(s) 466, 720, 867
AluI AGCT 3 cut(s) 466, 720, 867
Alw26I GTCTC 2 cut(s) 375, 775
AlwI GGATC 2 cut(s) 22, 662
Ama87I CYCGRG 1 cut(s) 548
Aor13HI TCCGGA 2 cut(s) 377, 670
AoxI GGCC 3 cut(s) 181, 496, 894
ApeKI GCWGC 3 cut(s) 189, 266, 879
Asp700I GAANNNNTTC 1 cut(s) 858
AspLEI GCGC 1 cut(s) 809
AspS9I GGNCC 3 cut(s) 181, 211, 446
AsuC2I CCSGG 3 cut(s) 549, 550, 656
AsuHPI GGTGA 3 cut(s) 100, 112, 739
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 2 cut(s) 211, 446
BanI GGYRCC 2 cut(s) 197, 826
BanII GRGCYC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 861
BbvI GCAGC 3 cut(s) 201, 253, 866
BccI CCATC 7 cut(s) 98, 125, 152, 368, 482, 961, 1001
BceAI ACGGC 4 cut(s) 41, 89, 202, 814
BcnI CCSGG 3 cut(s) 549, 550, 656
BcoDI GTCTC 2 cut(s) 375, 775
BfaI CTAG 1 cut(s) 161
BglII AGATCT 1 cut(s) 1028
BisI GCNGC 7 cut(s) 190, 193, 196, 267, 322, 880, 915
BlsI GCNGC 7 cut(s) 191, 194, 197, 268, 323, 881, 916
Bme1390I CCNGG 3 cut(s) 549, 550, 656
Bme18I GGWCC 2 cut(s) 211, 446
BmeRI GACNNNNNGTC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 548
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 3 cut(s) 181, 211, 446
BmiI GGNNCC 4 cut(s) 199, 448, 828, 951
BmrFI CCNGG 3 cut(s) 549, 550, 656
BmrI ACTGGG 1 cut(s) 799
BmsI GCATC 1 cut(s) 803
BmuI ACTGGG 1 cut(s) 799
BpiI GAAGAC 1 cut(s) 861
BplI GAGNNNNNCTC 2 cut(s) 359, 391
BpuEI CTTGAG 2 cut(s) 419, 893
BpuMI CCSGG 3 cut(s) 549, 550, 656
BsaAI YACGTR 1 cut(s) 748
BsaI GGTCTC 1 cut(s) 775
BsaJI CCNNGG 5 cut(s) 184, 442, 548, 771, 957
BsaWI WCCGGW 2 cut(s) 377, 670
BsaXI ACNNNNNCTCC 6 cut(s) 263, 293, 319, 349, 833, 863
Bsc4I CCNNNNNNNGG 5 cut(s) 178, 262, 633, 903, 906
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 334, 705, 794
BseAI TCCGGA 2 cut(s) 377, 670
BseDI CCNNGG 5 cut(s) 184, 442, 548, 771, 957
BseGI GGATG 4 cut(s) 90, 312, 794, 953
BseLI CCNNNNNNNGG 5 cut(s) 178, 262, 633, 903, 906
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 3 cut(s) 334, 705, 794
BseRI GAGGAG 4 cut(s) 115, 118, 265, 268
BseXI GCAGC 3 cut(s) 201, 253, 866
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 3 cut(s) 183, 498, 896
BshNI GGYRCC 2 cut(s) 197, 826
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 6 cut(s) 263, 378, 549, 656, 671, 839
BslFI GGGAC 3 cut(s) 424, 432, 649
BslI CCNNNNNNNGG 5 cut(s) 178, 262, 633, 903, 906
BsmAI GTCTC 2 cut(s) 375, 775
BsmBI CGTCTC 1 cut(s) 375
BsmFI GGGAC 3 cut(s) 424, 432, 649
BsmI GAATGC 1 cut(s) 968
BsnI GGCC 3 cut(s) 183, 498, 896
Bso31I GGTCTC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 656
Bsp13I TCCGGA 2 cut(s) 377, 670
Bsp143I GATC 4 cut(s) 27, 585, 667, 1028
Bsp68I TCGCGA 1 cut(s) 537
BspANI GGCC 3 cut(s) 183, 498, 896
BspCNI CTCAG 1 cut(s) 167
BspEI TCCGGA 2 cut(s) 377, 670
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 4 cut(s) 199, 448, 828, 951
BspPI GGATC 2 cut(s) 22, 662
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 2 cut(s) 197, 826
BspTNI GGTCTC 1 cut(s) 775
BsrBI CCGCTC 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 3 cut(s) 334, 705, 794
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 5 cut(s) 184, 442, 548, 771, 957
BssMI GATC 4 cut(s) 27, 585, 667, 1028
BssT1I CCWWGG 2 cut(s) 442, 771
Bst4CI ACNGT 2 cut(s) 202, 683
Bst6I CTCTTC 2 cut(s) 12, 136
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 6 cut(s) 264, 468, 481, 836, 884, 968
BstDEI CTNAG 1 cut(s) 154
BstDSI CCRYGG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 901
BstF5I GGATG 4 cut(s) 90, 312, 794, 953
BstFNI CGCG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 809
BstKTI GATC 4 cut(s) 30, 588, 670, 1031
BstMAI GTCTC 2 cut(s) 375, 775
BstMBI GATC 4 cut(s) 27, 585, 667, 1028
BstMWI GCNNNNNNNGC 6 cut(s) 53, 189, 195, 330, 476, 835
BstNSI RCATGY 1 cut(s) 886
BstSCI CCNGG 3 cut(s) 547, 548, 654
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 3 cut(s) 201, 253, 866
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 2 cut(s) 27, 1028
BstYI RGATCY 2 cut(s) 27, 1028
BsuRI GGCC 3 cut(s) 183, 498, 896
BtgI CCRYGG 1 cut(s) 184
BtgZI GCGATG 2 cut(s) 460, 518
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 4 cut(s) 90, 312, 794, 953
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 349, 712
BtuMI TCGCGA 1 cut(s) 537
Cac8I GCNNGC 6 cut(s) 264, 468, 481, 836, 884, 968
CfoI GCGC 1 cut(s) 809
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 3 cut(s) 181, 211, 446
Cfr9I CCCGGG 1 cut(s) 548
CseI GACGC 1 cut(s) 837
Csp6I GTAC 1 cut(s) 403
CviAII CATG 3 cut(s) 397, 406, 883
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 154
DpnI GATC 4 cut(s) 29, 587, 669, 1030
DpnII GATC 4 cut(s) 27, 585, 667, 1028
DriI GACNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 2 cut(s) 12, 136
Eam1105I GACNNNNNGTC 1 cut(s) 173
EarI CTCTTC 2 cut(s) 12, 136
EciI GGCGGA 2 cut(s) 139, 308
Eco130I CCWWGG 2 cut(s) 442, 771
Eco147I AGGCCT 2 cut(s) 498, 896
Eco24I GRGCYC 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 775
Eco47I GGWCC 2 cut(s) 211, 446
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 901
EcoO109I RGGNCCY 2 cut(s) 211, 446
EcoT14I CCWWGG 2 cut(s) 442, 771
EcoT38I GRGCYC 1 cut(s) 656
ErhI CCWWGG 2 cut(s) 442, 771
Esp3I CGTCTC 1 cut(s) 375
FaeI CATG 3 cut(s) 400, 409, 886
FalI AAGNNNNNCTT 4 cut(s) 450, 482, 959, 991
FaqI GGGAC 3 cut(s) 424, 432, 649
FatI CATG 3 cut(s) 396, 405, 882
FauI CCCGC 1 cut(s) 109
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 7 cut(s) 190, 193, 196, 267, 322, 880, 915
FokI GGATG 4 cut(s) 77, 299, 781, 940
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 7 cut(s) 190, 193, 196, 267, 322, 880, 915
FspBI CTAG 1 cut(s) 161
GlaI GCGC 1 cut(s) 808
GluI GCNGC 7 cut(s) 190, 193, 196, 267, 322, 880, 915
HaeIII GGCC 3 cut(s) 183, 498, 896
HapII CCGG 6 cut(s) 263, 378, 549, 656, 671, 839
HgaI GACGC 1 cut(s) 837
HhaI GCGC 1 cut(s) 809
Hin1II CATG 3 cut(s) 400, 409, 886
Hin6I GCGC 1 cut(s) 807
HinP1I GCGC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 5 cut(s) 168, 272, 517, 553, 614
HpaII CCGG 6 cut(s) 263, 378, 549, 656, 671, 839
HphI GGTGA 3 cut(s) 100, 112, 739
Hpy166II GTNNAC 5 cut(s) 61, 205, 305, 349, 909
Hpy188I TCNGA 9 cut(s) 157, 283, 300, 457, 780, 821, 853, 864, 958
Hpy188III TCNNGA 7 cut(s) 367, 378, 422, 536, 583, 671, 872
Hpy8I GTNNAC 5 cut(s) 61, 205, 305, 349, 909
Hpy99I CGWCG 3 cut(s) 24, 347, 853
HpyAV CCTTC 5 cut(s) 224, 460, 488, 518, 568
HpyCH4III ACNGT 2 cut(s) 202, 683
HpyCH4IV ACGT 5 cut(s) 19, 342, 384, 747, 997
HpyCH4V TGCA 6 cut(s) 603, 621, 882, 886, 945, 966
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 189, 195, 330, 476, 835
HpyF3I CTNAG 1 cut(s) 154
HpySE526I ACGT 5 cut(s) 19, 342, 384, 747, 997
Hsp92II CATG 3 cut(s) 400, 409, 886
HspAI GCGC 1 cut(s) 807
Kpn2I TCCGGA 2 cut(s) 377, 670
KroI GCCGGC 1 cut(s) 262
KroNI GCCGGC 1 cut(s) 264
Kzo9I GATC 4 cut(s) 27, 585, 667, 1028
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 5 cut(s) 658, 717, 771, 864, 955
LpnPI CCDG 9 cut(s) 276, 315, 391, 562, 669, 684, 718, 775, 852
Lsp1109I GCAGC 3 cut(s) 201, 253, 866
LweI GCATC 1 cut(s) 803
MaeI CTAG 1 cut(s) 161
MaeII ACGT 5 cut(s) 19, 342, 384, 747, 997
MaeIII GTNAC 5 cut(s) 106, 608, 689, 727, 752
MalI GATC 4 cut(s) 29, 587, 669, 1030
MbiI CCGCTC 1 cut(s) 661
MboI GATC 4 cut(s) 27, 585, 667, 1028
MboII GAAGA 4 cut(s) 123, 355, 470, 866
MflI RGATCY 2 cut(s) 27, 1028
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 1 cut(s) 72
MlyI GAGTC 4 cut(s) 162, 266, 511, 623
MmeI TCCRAC 2 cut(s) 37, 831
MroI TCCGGA 2 cut(s) 377, 670
MroNI GCCGGC 1 cut(s) 262
MroXI GAANNNNTTC 1 cut(s) 858
MseI TTAA 1 cut(s) 560
MspA1I CMGCKG 2 cut(s) 192, 914
MspI CCGG 6 cut(s) 263, 378, 549, 656, 671, 839
MspR9I CCNGG 3 cut(s) 549, 550, 656
Mva1269I GAATGC 1 cut(s) 968
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 6 cut(s) 53, 189, 195, 330, 476, 835
NaeI GCCGGC 1 cut(s) 264
NciI CCSGG 3 cut(s) 549, 550, 656
NdeII GATC 4 cut(s) 27, 585, 667, 1028
NgoMIV GCCGGC 1 cut(s) 262
NlaIII CATG 3 cut(s) 400, 409, 886
NlaIV GGNNCC 4 cut(s) 199, 448, 828, 951
NmuCI GTSAC 4 cut(s) 106, 608, 689, 727
NruI TCGCGA 1 cut(s) 537
NspI RCATGY 1 cut(s) 886
PaeI GCATGC 1 cut(s) 886
PceI AGGCCT 2 cut(s) 498, 896
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 498
PctI GAATGC 1 cut(s) 968
PdiI GCCGGC 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 1 cut(s) 553
PflMI CCANNNNNTGG 2 cut(s) 178, 906
PkrI GCNGC 7 cut(s) 191, 194, 197, 268, 323, 881, 916
PleI GAGTC 4 cut(s) 162, 266, 511, 622
PpsI GAGTC 4 cut(s) 162, 266, 511, 622
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 2 cut(s) 211, 446
Psp5II RGGWCCY 2 cut(s) 211, 446
PspN4I GGNNCC 4 cut(s) 199, 448, 828, 951
PspPI GGNCC 3 cut(s) 181, 211, 446
PspPPI RGGWCCY 2 cut(s) 211, 446
PsuI RGATCY 2 cut(s) 27, 1028
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 560
SatI GCNGC 7 cut(s) 190, 193, 196, 267, 322, 880, 915
Sau3AI GATC 4 cut(s) 27, 585, 667, 1028
Sau96I GGNCC 3 cut(s) 181, 211, 446
SchI GAGTC 4 cut(s) 162, 266, 511, 623
ScrFI CCNGG 3 cut(s) 549, 550, 656
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 1 cut(s) 803
SinI GGWCC 2 cut(s) 211, 446
SmaI CCCGGG 1 cut(s) 550
SmlI CTYRAG 2 cut(s) 434, 872
SmoI CTYRAG 2 cut(s) 434, 872
SphI GCATGC 1 cut(s) 886
Sse9I AATT 1 cut(s) 72
SseBI AGGCCT 2 cut(s) 498, 896
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 2 cut(s) 498, 896
StyD4I CCNGG 3 cut(s) 547, 548, 654
StyI CCWWGG 2 cut(s) 442, 771
TaaI ACNGT 2 cut(s) 202, 683
TaiI ACGT 5 cut(s) 22, 345, 387, 750, 1000
TaqI TCGA 5 cut(s) 309, 366, 492, 501, 981
TaqII GACCGA 1 cut(s) 799
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 402
TauI GCSGC 4 cut(s) 195, 198, 324, 917
TfiI GAWTC 1 cut(s) 553
Tru1I TTAA 1 cut(s) 560
Tru9I TTAA 1 cut(s) 560
TscAI CASTG 2 cut(s) 356, 712
TseFI GTSAC 4 cut(s) 106, 608, 689, 727
TseI GCWGC 3 cut(s) 189, 266, 879
Tsp45I GTSAC 4 cut(s) 106, 608, 689, 727
TspDTI ATGAA 2 cut(s) 521, 578
TspMI CCCGGG 1 cut(s) 548
TspRI CASTG 2 cut(s) 356, 712
Van91I CCANNNNNTGG 2 cut(s) 178, 906
VpaK11BI GGWCC 2 cut(s) 211, 446
XagI CCTNNNNNAGG 1 cut(s) 901
XceI RCATGY 1 cut(s) 886
XmaI CCCGGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.