Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Reverse (-)

34864523 .. 34868874

Gene Structure 4352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG321900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCTCAGGATTGTGAAGCATCTTCGGCACGCAAATCGATCTTTGGTGAGATGTGGGCTGCCAGTGCTATCGCCTCCACTCACTGAGGGTCTTCAGCATCAGCATCTTCCACTCCTTCAACAATCGTTGACGATTTATCAAAGATGTCTATTTTCAACAACTACCACTGCTTCTGCAAATCAAGGAGAATCAAAATCAAAAACTTCTGAAAAAGCTAATTCTGATGAAGGGAGCAAGTCCGGGGAATCACATGAAAGCAGTAATGCTGGAAAATCTGTCCGTGGAGGGCCTGTTTCGTGGTTGAGCTTTTTGTTGCTCATAGCAACCGGGGCAGGAATCATCCTCTACTATGACAAGGAAAAGAGACAGCATATTCAAGACATATTTAATGCATCCAAGGAGGTAAAGCAAGGACCATCTGCGGGATTAGCTGCTATTGGAGGTCCATTCAATCTTATCAACCACGATGGGAAGCGTGTCACTGAAAAAGACTTTCTGGGGAAATGGATGTTAATCTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTACAGAAACTAGCCACTGCAGTTGATAAAATAAAGGAAAATGCAGGGATTGAGATAGTCCCCGTGTTCATCTCTGTTGATCCTGAAAGAGATACTGTTGAGCAAGTCCGTGAATATGTCAAAGGTAGGGATCAATATTTTAAGAAATTGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

237

Amino Acids

26.29

Weight (kDa)

8.8

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	147 - 233	2.1e-32	SCO1/SenC
AhpC-TSA	PF00578	150 - 219	1.2e-06	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	2 cut(s)	632, 696
AcuI	CTGAAG	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	119, 156, 377, 451
AluBI	AGCT	3 cut(s)	215, 306, 431
AluI	AGCT	3 cut(s)	215, 306, 431
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	632, 696
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	58, 431
AspS9I	GGNCC	3 cut(s)	287, 413, 443
AsuC2I	CCSGG	2 cut(s)	241, 328
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	413, 443
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	45, 418
BccI	CCATC	2 cut(s)	424, 461
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BcnI	CCSGG	2 cut(s)	241, 328
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	2 cut(s)	59, 432
BlsI	GCNGC	2 cut(s)	60, 433
Bme1390I	CCNGG	2 cut(s)	241, 328
Bme18I	GGWCC	2 cut(s)	413, 443
BmgT120I	GGNCC	3 cut(s)	287, 413, 443
BmrFI	CCNGG	2 cut(s)	241, 328
BmsI	GCATC	4 cut(s)	28, 106, 112, 401
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	241, 328
Bsa29I	ATCGAT	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	512
BsaJI	CCNNGG	4 cut(s)	240, 280, 327, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	37
BseDI	CCNNGG	4 cut(s)	240, 280, 327, 396
BseGI	GGATG	3 cut(s)	339, 392, 513
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	19, 75
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	45, 418
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	240, 327
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	38, 637, 688
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	18, 76
BspDI	ATCGAT	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	2 cut(s)	632, 696
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	240, 280, 327, 396
BssMI	GATC	3 cut(s)	38, 637, 688
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	5, 84
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	3 cut(s)	339, 392, 513
BstKTI	GATC	3 cut(s)	41, 640, 691
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	38, 637, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 64, 329, 428
BstSCI	CCNGG	2 cut(s)	239, 326
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	45, 418
BstV2I	GAAGAC	1 cut(s)	83
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	3 cut(s)	339, 392, 513
BtsI	GCAGTG	3 cut(s)	165, 532, 573
BtsIMutI	CAGTG	6 cut(s)	69, 81, 165, 480, 532, 573
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	287, 413, 443
ClaI	ATCGAT	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	6 cut(s)	58, 215, 289, 306, 431, 572
CviKI_1	RGCY	6 cut(s)	58, 215, 289, 306, 431, 572
DdeI	CTNAG	2 cut(s)	5, 84
DpnI	GATC	3 cut(s)	40, 639, 690
DpnII	GATC	3 cut(s)	38, 637, 688
Eco130I	CCWWGG	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	413, 443
Eco57I	CTGAAG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	1 cut(s)	396
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	1 cut(s)	254
FaiI	YATR	6 cut(s)	252, 320, 351, 372, 383, 675
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	59, 432
FokI	GGATG	3 cut(s)	326, 379, 520
Fsp4HI	GCNGC	2 cut(s)	59, 432
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	2 cut(s)	59, 432
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	240, 327
Hin1II	CATG	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HinfI	GANTC	3 cut(s)	188, 245, 336
HpaII	CCGG	2 cut(s)	240, 327
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	208, 223
Hpy188III	TCNNGA	3 cut(s)	7, 377, 641
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	125, 221
HpyCH4III	ACNGT	1 cut(s)	655
HpyCH4V	TGCA	4 cut(s)	176, 392, 578, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 64, 329, 428
HpyF3I	CTNAG	2 cut(s)	5, 84
Hsp92II	CATG	1 cut(s)	254
Kzo9I	GATC	3 cut(s)	38, 637, 688
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	45, 418
LweI	GCATC	4 cut(s)	28, 106, 112, 401
MaeI	CTAG	1 cut(s)	569
MaeIII	GTNAC	2 cut(s)	478, 558
MalI	GATC	3 cut(s)	40, 639, 690
MboI	GATC	3 cut(s)	38, 637, 688
MboII	GAAGA	3 cut(s)	14, 83, 98
MluCI	AATT	2 cut(s)	217, 704
MnlI	CCTC	6 cut(s)	79, 84, 278, 353, 394, 434
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	3 cut(s)	387, 512, 699
MspI	CCGG	2 cut(s)	240, 327
MspR9I	CCNGG	2 cut(s)	241, 328
MwoI	GCNNNNNNNGC	4 cut(s)	25, 64, 329, 428
NciI	CCSGG	2 cut(s)	241, 328
NdeII	GATC	3 cut(s)	38, 637, 688
NlaIII	CATG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	478
NsiI	ATGCAT	1 cut(s)	394
PfeI	GAWTC	3 cut(s)	188, 245, 336
PkrI	GCNGC	2 cut(s)	60, 433
PspPI	GGNCC	3 cut(s)	287, 413, 443
PstI	CTGCAG	1 cut(s)	580
SaqAI	TTAA	3 cut(s)	387, 512, 699
SatI	GCNGC	2 cut(s)	59, 432
Sau3AI	GATC	3 cut(s)	38, 637, 688
Sau96I	GGNCC	3 cut(s)	287, 413, 443
ScrFI	CCNGG	2 cut(s)	241, 328
SetI	ASST	6 cut(s)	217, 308, 405, 433, 445, 685
SfaNI	GCATC	4 cut(s)	28, 106, 112, 401
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	413, 443
Sse9I	AATT	2 cut(s)	217, 704
SsiI	CCGC	1 cut(s)	422
SspI	AATATT	1 cut(s)	695
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	239, 326
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	655
TaqI	TCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	217, 704
TfiI	GAWTC	3 cut(s)	188, 245, 336
Tru1I	TTAA	3 cut(s)	387, 512, 699
Tru9I	TTAA	3 cut(s)	387, 512, 699
TscAI	CASTG	6 cut(s)	69, 88, 172, 487, 539, 580
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	2 cut(s)	58, 431
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	240, 267, 616
TspGWI	ACGGA	2 cut(s)	269, 656
TspRI	CASTG	6 cut(s)	69, 88, 172, 487, 539, 580
VpaK11BI	GGWCC	2 cut(s)	413, 443
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.