Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

18754978 .. 18759672

Gene Structure 4695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g26950.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCTCAGGATTGTGAAACATCTTCAGTACGCCAATCGTTCTTTGGTAAGATGTGGGCTGCCAGTGTTATCACCTCCGCTCACTAAGGGTCTTCAGCATCATCATCAGCATCTCCCTCTCCTTCAACAGTCGTTGATGATATATCAAAGATGTCCATTTTCAACAACTACCCCTGCTTCTGCAAATCAAGAAGGATCAAAATCAAAAACTTCGGAAAATGCTAATTCTGATGAAGGGAGCAAGTCGGGGGAATCACATGAAAGCAGTGATGCTGGAAAGTCTGTTCGTGGAGGGCCTGTTTCGTGGTTGAGCTTTTTGTTGCTCGTAGCAACTGGGGCAGGAGTCATTCTCTATTATGACAAGGAAAAGAGACAGCATCTTCAAGACATATTTAATGCATCAAAGGAGGTAAAGGAAGGACCATCTGCGGGAAGAGCTGCCATTGGAGGTCCATTCAAACTTATCAACCACGATGGGAAGCCTGTAACTGAAAAAGACTTTTTGGGGAAATGGACATTGATGTACTTTGGATTCACTCACTGCCCTGATATTTGCCCAGACGAATTACAGAAACTAGCTGCTGCAGTTGATAAAATAAAGGCCAATGCAGGGATTGAGATAGTCCCCGTATTCATCTCTGTCGATCCTGAAAGAGATACTGTTGAGCAAGTCCGTGAATACATCAAAGAGTTTCATCCAACGTTGATTGGGTTAACTGGTAACCCAGACGAGATACGCAGTGTGGCCCGTGCCTATCGCGTATACTATATGAAGACAACTGAAGAAGATTCAGATTATCTTGTTGATCATTCCATAGTCATGTACTTGATGAGCCCTAGTATGGACTTTGTTAAATTTTTTGGGAAGAACAATGATGTTGATTCGCTTGCTGATGGCATAACCAAAGAGATAAAGCAGTACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

310

Amino Acids

34.45

Weight (kDa)

6.83

Isoelectric Point (pI)

42.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	149 - 282	1.2e-51	SCO1/SenC
AhpC-TSA	PF00578	152 - 270	3.1e-09	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	762
AccII	CGCG	1 cut(s)	759
AciI	CCGC	2 cut(s)	77, 428
AclI	AACGTT	1 cut(s)	701
AclWI	GGATC	2 cut(s)	202, 638
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	3 cut(s)	8, 77, 801
AfaI	GTAC	4 cut(s)	29, 524, 824, 920
AfiI	CCNNNNNNNGG	3 cut(s)	428, 609, 841
AgsI	TTSAA	4 cut(s)	125, 162, 383, 457
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	3 cut(s)	312, 437, 578
AluI	AGCT	3 cut(s)	312, 437, 578
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	2 cut(s)	202, 638
AoxI	GGCC	3 cut(s)	293, 600, 744
ApeKI	GCWGC	4 cut(s)	58, 437, 578, 581
ApoI	RAATTY	1 cut(s)	854
AspS9I	GGNCC	4 cut(s)	293, 419, 449, 745
AsuHPI	GGTGA	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	419, 449
BanII	GRGCYC	1 cut(s)	836
BbsI	GAAGAC	2 cut(s)	83, 779
BbvI	GCAGC	4 cut(s)	45, 424, 565, 568
BccI	CCATC	3 cut(s)	430, 467, 887
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	2 cut(s)	575, 837
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	4 cut(s)	59, 438, 579, 582
BlsI	GCNGC	4 cut(s)	60, 439, 580, 583
Bme18I	GGWCC	2 cut(s)	419, 449
BmgT120I	GGNCC	4 cut(s)	293, 419, 449, 745
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	5 cut(s)	106, 118, 259, 385, 407
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	2 cut(s)	83, 779
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
Bpu10I	CCTNAGC	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	428, 609, 841
Bse1I	ACTGG	3 cut(s)	62, 337, 721
Bse8I	GATNNNNATC	1 cut(s)	199
BseGI	GGATG	1 cut(s)	694
BseJI	GATNNNNATC	1 cut(s)	199
BseLI	CCNNNNNNNGG	3 cut(s)	428, 609, 841
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	3 cut(s)	62, 337, 721
BseXI	GCAGC	4 cut(s)	45, 424, 565, 568
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	3 cut(s)	295, 602, 746
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	3 cut(s)	428, 609, 841
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	3 cut(s)	295, 602, 746
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	3 cut(s)	194, 643, 805
BspACI	CCGC	2 cut(s)	77, 428
BspANI	GGCC	3 cut(s)	295, 602, 746
BspCNI	CTCAG	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	759
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	2 cut(s)	202, 638
BspQI	GCTCTTC	1 cut(s)	427
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	3 cut(s)	62, 337, 721
BssMI	GATC	3 cut(s)	194, 643, 805
BssNAI	GTATAC	1 cut(s)	763
Bst1107I	GTATAC	1 cut(s)	763
Bst4CI	ACNGT	2 cut(s)	129, 661
Bst6I	CTCTTC	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	888
BstDEI	CTNAG	2 cut(s)	5, 84
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	1 cut(s)	694
BstFNI	CGCG	1 cut(s)	759
BstKTI	GATC	3 cut(s)	197, 646, 808
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	194, 643, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 434
BstPI	GGTNACC	1 cut(s)	719
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	4 cut(s)	45, 424, 565, 568
BstV2I	GAAGAC	2 cut(s)	83, 779
BstZ17I	GTATAC	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	295, 602, 746
BtsCI	GGATG	1 cut(s)	694
BtsI	GCAGTG	3 cut(s)	271, 538, 745
BtsIMutI	CAGTG	4 cut(s)	69, 271, 538, 745
Cac8I	GCNNGC	1 cut(s)	888
Cfr13I	GGNCC	4 cut(s)	293, 419, 449, 745
Csp6I	GTAC	4 cut(s)	28, 523, 823, 919
CviAII	CATG	2 cut(s)	257, 820
CviJI	RGCY	9 cut(s)	58, 295, 312, 437, 481, 578, 602, 746, 834
CviKI_1	RGCY	9 cut(s)	58, 295, 312, 437, 481, 578, 602, 746, 834
CviQI	GTAC	4 cut(s)	28, 523, 823, 919
DdeI	CTNAG	2 cut(s)	5, 84
DpnI	GATC	3 cut(s)	196, 645, 807
DpnII	GATC	3 cut(s)	194, 643, 805
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	836
Eco47I	GGWCC	2 cut(s)	419, 449
Eco57I	CTGAAG	3 cut(s)	8, 77, 801
Eco91I	GGTNACC	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	719
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	836
FaeI	CATG	2 cut(s)	260, 823
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	2 cut(s)	256, 819
FauI	CCCGC	1 cut(s)	421
FbaI	TGATCA	1 cut(s)	805
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	4 cut(s)	59, 438, 579, 582
FokI	GGATG	1 cut(s)	681
FriOI	GRGCYC	1 cut(s)	836
Fsp4HI	GCNGC	4 cut(s)	59, 438, 579, 582
FspBI	CTAG	2 cut(s)	575, 837
GluI	GCNGC	4 cut(s)	59, 438, 579, 582
HaeIII	GGCC	3 cut(s)	295, 602, 746
Hin1II	CATG	2 cut(s)	260, 823
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	5 cut(s)	251, 342, 531, 788, 881
HpaI	GTTAAC	1 cut(s)	714
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	714, 763
Hpy188I	TCNGA	3 cut(s)	214, 229, 793
Hpy188III	TCNNGA	4 cut(s)	7, 188, 383, 647
Hpy8I	GTNNAC	2 cut(s)	714, 763
HpyAV	CCTTC	4 cut(s)	131, 185, 227, 410
HpyCH4III	ACNGT	2 cut(s)	129, 661
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	4 cut(s)	182, 398, 584, 608
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 434
HpyF3I	CTNAG	2 cut(s)	5, 84
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	2 cut(s)	260, 823
Ksp22I	TGATCA	1 cut(s)	805
KspAI	GTTAAC	1 cut(s)	714
Kzo9I	GATC	3 cut(s)	194, 643, 805
LguI	GCTCTTC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	237
Lsp1109I	GCAGC	4 cut(s)	45, 424, 565, 568
LweI	GCATC	5 cut(s)	106, 118, 259, 385, 407
MaeI	CTAG	2 cut(s)	575, 837
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	2 cut(s)	484, 719
MalI	GATC	3 cut(s)	196, 645, 807
MbiI	CCGCTC	1 cut(s)	79
MboI	GATC	3 cut(s)	194, 643, 805
MboII	GAAGA	8 cut(s)	14, 83, 371, 444, 784, 794, 797, 877
MhlI	GDGCHC	1 cut(s)	836
MluCI	AATT	3 cut(s)	223, 563, 854
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	722
MnlI	CCTC	5 cut(s)	84, 126, 284, 400, 440
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	3 cut(s)	393, 713, 852
MslI	CAYNNNNRTG	1 cut(s)	818
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	2 cut(s)	335, 434
NdeII	GATC	3 cut(s)	194, 643, 805
NlaIII	CATG	2 cut(s)	260, 823
NsiI	ATGCAT	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	427
PfeI	GAWTC	4 cut(s)	251, 531, 788, 881
PkrI	GCNGC	4 cut(s)	60, 439, 580, 583
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Psp1406I	AACGTT	1 cut(s)	701
PspEI	GGTNACC	1 cut(s)	719
PspPI	GGNCC	4 cut(s)	293, 419, 449, 745
PstI	CTGCAG	1 cut(s)	586
RsaI	GTAC	4 cut(s)	29, 524, 824, 920
RsaNI	GTAC	4 cut(s)	28, 523, 823, 919
RseI	CAYNNNNRTG	1 cut(s)	818
SapI	GCTCTTC	1 cut(s)	427
SaqAI	TTAA	3 cut(s)	393, 713, 852
SatI	GCNGC	4 cut(s)	59, 438, 579, 582
Sau3AI	GATC	3 cut(s)	194, 643, 805
Sau96I	GGNCC	4 cut(s)	293, 419, 449, 745
SchI	GAGTC	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	836
SetI	ASST	7 cut(s)	76, 314, 411, 439, 451, 580, 704
SfaNI	GCATC	5 cut(s)	106, 118, 259, 385, 407
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	2 cut(s)	419, 449
SmiMI	CAYNNNNRTG	1 cut(s)	818
Sse9I	AATT	3 cut(s)	223, 563, 854
SsiI	CCGC	2 cut(s)	77, 428
SspMI	CTAG	2 cut(s)	575, 837
TaaI	ACNGT	2 cut(s)	129, 661
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	1 cut(s)	642
TasI	AATT	3 cut(s)	223, 563, 854
TatI	WGTACW	3 cut(s)	522, 822, 918
TfiI	GAWTC	4 cut(s)	251, 531, 788, 881
Tru1I	TTAA	3 cut(s)	393, 713, 852
Tru9I	TTAA	3 cut(s)	393, 713, 852
TscAI	CASTG	4 cut(s)	69, 271, 545, 745
TseI	GCWGC	4 cut(s)	58, 437, 578, 581
TspDTI	ATGAA	5 cut(s)	246, 273, 622, 683, 785
TspGWI	ACGGA	1 cut(s)	662
TspRI	CASTG	4 cut(s)	69, 271, 545, 745
VpaK11BI	GGWCC	2 cut(s)	419, 449
XapI	RAATTY	1 cut(s)	854
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	762
XspI	CTAG	2 cut(s)	575, 837
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.