Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

35300229 .. 35304278

Gene Structure 4050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTATGTCTTTTCTAGTGAATTGTTCGTATTTCCACTACTTGAGACTTTATCCACCTTGGCCAGCTTTGGTAAATTGCAGACTTGTTTTCAGGAAAATGGAGGGATTGTGAAGCATCTTCGGCACGCCAATCGATCTTTGGTGAGATGCGGGCTGCCAGTGCTATCGCCTCCACTCACTGAGGGTCTTCAGCATCAGCATCTTCCACTCCTTCAACAGTCATTGACAATTTATCAAAGATGTCTATTTTCAACAACTACCACTGCTTCTGCAAATCAAGGAGAATCAAAATCAAAAACTTCTGCAAATGCTAATTCTGATGAAGGGAGCAAGTCCGGGGAATCACATGAAAGCAGTAATGCTGGAAAATCTGTCCGTGGAGGGCCTGTTTCGTGGTTGAGCTTTTTGTTGCTCGTAGCAACCGGGGCAGGAATCATCCTCTACTATGACAAGGAAAAGAGACAGCATATTCAAGACATATTTAATGCATCCAAGGAGGTAAAGCAAGGACCATCTGCTGGATTAGCTGCTATTGGAGGTCCATTCAATCTTATCAACCACGATGGGAAGCGTGTAACTGAAAAAGACTTTCTGGGGAAATGGACGTTAATCTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTGCAGAAACTAGCCACTGCAGTTGATAAAATAAAGGACAATGCAGGGATTGAGATAGTCCCCGTGTTCATCTCTGTTGATCCTGAAAGAGATACTGTTGAGCAAGTACGTGAATATGTCAAAGAGTTTCATCCAAGGTTGATTGGGTTAACGGGTAACTCGGATGAGACACACAGTGTGGCCCGTGCCTATCGTGTATATTATATGAAGACAACAGAAGAAGATTCAGATTACCTTGTTGATCATTCCATAGTCATGTACTTGATGAGCCCTACTATGGACTTTGTTAAATTTTTTGGGAAGAACAATGATGTTGATTCACTTGCTGATGGCATAACCAAAGAGATAAAGCAGTACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

339

Amino Acids

37.68

Weight (kDa)

6.27

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	179 - 312	3.6e-51	SCO1/SenC
AhpC-TSA	PF00578	182 - 300	5.4e-11	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	518
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	728
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	944
AcuI	CTGAAG	1 cut(s)	173
AdeI	CACNNNGTG	2 cut(s)	830, 832
AfaI	GTAC	3 cut(s)	762, 914, 1010
AfiI	CCNNNNNNNGG	2 cut(s)	518, 931
AgsI	TTSAA	4 cut(s)	215, 252, 473, 547
AluBI	AGCT	3 cut(s)	66, 402, 527
AluI	AGCT	3 cut(s)	66, 402, 527
Alw26I	GTCTC	3 cut(s)	38, 454, 815
AlwI	GGATC	1 cut(s)	728
AoxI	GGCC	3 cut(s)	60, 383, 834
ApeKI	GCWGC	2 cut(s)	154, 527
ApoI	RAATTY	1 cut(s)	944
AspS9I	GGNCC	4 cut(s)	383, 509, 539, 835
AsuC2I	CCSGG	2 cut(s)	337, 424
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	509, 539
BalI	TGGCCA	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	926
BbsI	GAAGAC	2 cut(s)	179, 869
BbvI	GCAGC	2 cut(s)	141, 514
BccI	CCATC	3 cut(s)	520, 557, 977
BcgI	CGANNNNNNTGC	2 cut(s)	113, 147
BclI	TGATCA	1 cut(s)	895
BcnI	CCSGG	2 cut(s)	337, 424
BcoDI	GTCTC	3 cut(s)	38, 454, 815
BfaI	CTAG	2 cut(s)	15, 665
BfmI	CTRYAG	1 cut(s)	672
BisI	GCNGC	2 cut(s)	155, 528
BlsI	GCNGC	2 cut(s)	156, 529
Bme1390I	CCNGG	2 cut(s)	337, 424
Bme18I	GGWCC	2 cut(s)	509, 539
BmgT120I	GGNCC	4 cut(s)	383, 509, 539, 835
BmrFI	CCNGG	2 cut(s)	337, 424
BmsI	GCATC	5 cut(s)	124, 137, 202, 208, 497
BpiI	GAAGAC	2 cut(s)	179, 869
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	337, 424
Bsa29I	ATCGAT	1 cut(s)	133
BsaAI	YACGTR	1 cut(s)	764
BsaJI	CCNNGG	6 cut(s)	57, 336, 376, 423, 492, 788
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 372, 402
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 931
Bse1I	ACTGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	133
BseDI	CCNNGG	6 cut(s)	57, 336, 376, 423, 492, 788
BseGI	GGATG	4 cut(s)	435, 488, 784, 823
BseLI	CCNNNNNNNGG	2 cut(s)	518, 931
BseMII	CTCAG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	158
BseXI	GCAGC	2 cut(s)	141, 514
BshFI	GGCC	3 cut(s)	62, 385, 836
BshVI	ATCGAT	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	336, 423
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	2 cut(s)	518, 931
BsmAI	GTCTC	3 cut(s)	38, 454, 815
BsmFI	GGGAC	1 cut(s)	698
BsnI	GGCC	3 cut(s)	62, 385, 836
Bsp1286I	GDGCHC	1 cut(s)	926
Bsp143I	GATC	3 cut(s)	134, 733, 895
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	3 cut(s)	62, 385, 836
BspCNI	CTCAG	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	158
BssECI	CCNNGG	6 cut(s)	57, 336, 376, 423, 492, 788
BssMI	GATC	3 cut(s)	134, 733, 895
BssT1I	CCWWGG	3 cut(s)	57, 492, 788
Bst4CI	ACNGT	3 cut(s)	219, 751, 830
BstBAI	YACGTR	1 cut(s)	764
BstC8I	GCNNGC	3 cut(s)	64, 126, 152
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	435, 488, 784, 823
BstKTI	GATC	3 cut(s)	137, 736, 898
BstMAI	GTCTC	3 cut(s)	38, 454, 815
BstMBI	GATC	3 cut(s)	134, 733, 895
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 160, 425, 524
BstSCI	CCNGG	2 cut(s)	335, 422
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	2 cut(s)	141, 514
BstV2I	GAAGAC	2 cut(s)	179, 869
Bsu15I	ATCGAT	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	62, 385, 836
BsuTUI	ATCGAT	1 cut(s)	133
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	4 cut(s)	435, 488, 784, 823
BtsI	GCAGTG	3 cut(s)	261, 628, 669
BtsIMutI	CAGTG	6 cut(s)	165, 177, 261, 628, 669, 835
Cac8I	GCNNGC	3 cut(s)	64, 126, 152
Cfr13I	GGNCC	4 cut(s)	383, 509, 539, 835
ClaI	ATCGAT	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	761, 913, 1009
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	2 cut(s)	347, 910
CviJI	RGCY	9 cut(s)	62, 66, 154, 385, 402, 527, 668, 836, 924
CviKI_1	RGCY	9 cut(s)	62, 66, 154, 385, 402, 527, 668, 836, 924
CviQI	GTAC	3 cut(s)	761, 913, 1009
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	3 cut(s)	136, 735, 897
DpnII	GATC	3 cut(s)	134, 733, 895
DraIII	CACNNNGTG	2 cut(s)	830, 832
EaeI	YGGCCR	1 cut(s)	60
Eco130I	CCWWGG	3 cut(s)	57, 492, 788
Eco24I	GRGCYC	1 cut(s)	926
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	2 cut(s)	509, 539
Eco57I	CTGAAG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	3 cut(s)	57, 492, 788
EcoT22I	ATGCAT	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	926
ErhI	CCWWGG	3 cut(s)	57, 492, 788
FaeI	CATG	2 cut(s)	350, 913
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	2 cut(s)	346, 909
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	1 cut(s)	895
Fnu4HI	GCNGC	2 cut(s)	155, 528
FokI	GGATG	4 cut(s)	422, 475, 771, 830
FriOI	GRGCYC	1 cut(s)	926
Fsp4HI	GCNGC	2 cut(s)	155, 528
FspBI	CTAG	2 cut(s)	15, 665
GluI	GCNGC	2 cut(s)	155, 528
HaeIII	GGCC	3 cut(s)	62, 385, 836
HapII	CCGG	2 cut(s)	336, 423
Hin1II	CATG	2 cut(s)	350, 913
HincII	GTYRAC	1 cut(s)	804
HindII	GTYRAC	1 cut(s)	804
HinfI	GANTC	5 cut(s)	284, 341, 432, 878, 971
HpaI	GTTAAC	1 cut(s)	804
HpaII	CCGG	2 cut(s)	336, 423
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	804
Hpy188I	TCNGA	3 cut(s)	319, 817, 883
Hpy188III	TCNNGA	3 cut(s)	92, 473, 737
Hpy8I	GTNNAC	1 cut(s)	804
HpyAV	CCTTC	2 cut(s)	221, 317
HpyCH4III	ACNGT	3 cut(s)	219, 751, 830
HpyCH4IV	ACGT	2 cut(s)	605, 763
HpyCH4V	TGCA	7 cut(s)	79, 272, 305, 488, 658, 674, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 160, 425, 524
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	2 cut(s)	605, 763
Hsp92II	CATG	2 cut(s)	350, 913
Ksp22I	TGATCA	1 cut(s)	895
KspAI	GTTAAC	1 cut(s)	804
Kzo9I	GATC	3 cut(s)	134, 733, 895
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	2 cut(s)	141, 514
LweI	GCATC	5 cut(s)	124, 137, 202, 208, 497
MaeI	CTAG	2 cut(s)	15, 665
MaeII	ACGT	2 cut(s)	605, 763
MaeIII	GTNAC	2 cut(s)	574, 809
MalI	GATC	3 cut(s)	136, 735, 897
MboI	GATC	3 cut(s)	134, 733, 895
MboII	GAAGA	7 cut(s)	110, 179, 194, 874, 884, 887, 967
MhlI	GDGCHC	1 cut(s)	926
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	5 cut(s)	20, 74, 228, 313, 944
MluNI	TGGCCA	1 cut(s)	62
MnlI	CCTC	7 cut(s)	95, 175, 180, 374, 449, 490, 530
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	490
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	4 cut(s)	483, 608, 803, 942
MslI	CAYNNNNRTG	1 cut(s)	908
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	2 cut(s)	336, 423
MspR9I	CCNGG	2 cut(s)	337, 424
MwoI	GCNNNNNNNGC	4 cut(s)	121, 160, 425, 524
NciI	CCSGG	2 cut(s)	337, 424
NdeII	GATC	3 cut(s)	134, 733, 895
NlaIII	CATG	2 cut(s)	350, 913
NsiI	ATGCAT	1 cut(s)	490
PfeI	GAWTC	5 cut(s)	284, 341, 432, 878, 971
PflMI	CCANNNNNTGG	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	156, 529
Ppu21I	YACGTR	1 cut(s)	764
PspPI	GGNCC	4 cut(s)	383, 509, 539, 835
PstI	CTGCAG	1 cut(s)	676
RsaI	GTAC	3 cut(s)	762, 914, 1010
RsaNI	GTAC	3 cut(s)	761, 913, 1009
RseI	CAYNNNNRTG	1 cut(s)	908
SaqAI	TTAA	4 cut(s)	483, 608, 803, 942
SatI	GCNGC	2 cut(s)	155, 528
Sau3AI	GATC	3 cut(s)	134, 733, 895
Sau96I	GGNCC	4 cut(s)	383, 509, 539, 835
ScrFI	CCNGG	2 cut(s)	337, 424
SduI	GDGCHC	1 cut(s)	926
SfaNI	GCATC	5 cut(s)	124, 137, 202, 208, 497
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	2 cut(s)	509, 539
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	5 cut(s)	20, 74, 228, 313, 944
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	2 cut(s)	15, 665
StyD4I	CCNGG	2 cut(s)	335, 422
StyI	CCWWGG	3 cut(s)	57, 492, 788
TaaI	ACNGT	3 cut(s)	219, 751, 830
TaiI	ACGT	2 cut(s)	608, 766
TaqI	TCGA	1 cut(s)	133
TasI	AATT	5 cut(s)	20, 74, 228, 313, 944
TatI	WGTACW	2 cut(s)	912, 1008
TfiI	GAWTC	5 cut(s)	284, 341, 432, 878, 971
Tru1I	TTAA	4 cut(s)	483, 608, 803, 942
Tru9I	TTAA	4 cut(s)	483, 608, 803, 942
TscAI	CASTG	6 cut(s)	165, 184, 268, 635, 676, 835
TseI	GCWGC	2 cut(s)	154, 527
TspDTI	ATGAA	5 cut(s)	336, 363, 712, 773, 875
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	6 cut(s)	165, 184, 268, 635, 676, 835
Van91I	CCANNNNNTGG	1 cut(s)	518
VpaK11BI	GGWCC	2 cut(s)	509, 539
XapI	RAATTY	1 cut(s)	944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	15, 665
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.