Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

26190835 .. 26193267

Gene Structure 2433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCGACCATCATTTCCAGGACCGTAAATCATCTTCGTTACGTCAACCGCTATCTGGTCCGATCCAGGTTGCCGATTTCGTCACCACCGCTAGCTGAGTCTCTTCAAAATCGGCATCTTCCACTCCTTCAACAGTCGCTGGGAATTTATCGAAGATGTCTTCTTTCAACCATAACCAATACTGCAGCAAATGAAGGAAACCCAGAATCAAAAACTTCAGAAAATGCAAATTCTGATCATTCTGGCGATGGGAACAAGTCTGGGGAATCACATGAAAGTAATAATGCTGGGAAATCTGTTCGAGGAGGGCCGGTTTCGTGGTTGAGTTTTCTGCTGCTGGTAGCAACTGGAGCTGGAATTGTACTCTATTACGACAAGGAAAAGAGACAACATATAGAAGAAATATTTAAAGCATCCAAGGAAGTAAAGCAAGGACCATCTGTGGGAAAGGCTGCCATTGGGGGTCCATTCAATCTTATCAACCATGACGGGAAGCGAGTAACTGAAAAAGATTTTTTGGGGAAATGGACATTGCTATACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTACAGAAGTTAGCTGCTGCAGTTGATAAAATAAAGGAAAAAGGAGGGATTGAGATAGTACCCTTGTTCATATCTGTTGATCCTGAAAGGGACACCGTTGAGCAAGTCCGTGAATATGTCAAAGAGTTTCATCCAAAGCTGATCGGGTTAACTGGTAGCTCGGATGAAATACGGAGCGTGGCTCGTGCATATCGAGTATATTACATGAAGACCCAAGAAGAAGACTCAGATTATCTTGTCGACCATTCCATAGTCATGTACTTAATGAGTCCCAAAATGGAATTTGTTAAATTTTTTGGGAAGAACAATGATGTTGATTCACTTGCTGAAGGTATAACGAAAGAGATCAAGCAGTACAAGAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

316

Amino Acids

35.35

Weight (kDa)

8.53

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	819
AciI	CCGC	2 cut(s)	49, 89
AclWI	GGATC	2 cut(s)	57, 653
AcsI	RAATTY	4 cut(s)	144, 229, 860, 869
AcuI	CTGAAG	2 cut(s)	201, 927
AfaI	GTAC	4 cut(s)	363, 639, 839, 935
AfiI	CCNNNNNNNGG	2 cut(s)	55, 443
AgsI	TTSAA	4 cut(s)	107, 131, 168, 472
AjnI	CCWGG	2 cut(s)	17, 65
AluBI	AGCT	5 cut(s)	95, 353, 593, 718, 738
AluI	AGCT	5 cut(s)	95, 353, 593, 718, 738
Alw26I	GTCTC	2 cut(s)	105, 379
AlwI	GGATC	2 cut(s)	57, 653
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	5 cut(s)	185, 334, 452, 593, 596
ApoI	RAATTY	4 cut(s)	144, 229, 860, 869
AspS9I	GGNCC	5 cut(s)	21, 58, 308, 434, 464
AsuHPI	GGTGA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	91
AvaII	GGWCC	4 cut(s)	21, 58, 434, 464
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BauI	CACGAG	1 cut(s)	762
BbsI	GAAGAC	3 cut(s)	152, 794, 807
BbvI	GCAGC	5 cut(s)	197, 321, 439, 580, 583
BccI	CCATC	3 cut(s)	17, 242, 445
BciT130I	CCWGG	2 cut(s)	19, 67
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	105, 379
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	2 cut(s)	183, 597
BisI	GCNGC	5 cut(s)	186, 335, 453, 594, 597
BlsI	GCNGC	5 cut(s)	187, 336, 454, 595, 598
Bme1390I	CCNGG	2 cut(s)	19, 67
Bme18I	GGWCC	4 cut(s)	21, 58, 434, 464
BmgT120I	GGNCC	5 cut(s)	21, 58, 308, 434, 464
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	19, 67
BmsI	GCATC	2 cut(s)	124, 422
BmtI	GCTAGC	1 cut(s)	95
BpiI	GAAGAC	3 cut(s)	152, 794, 807
BplI	GAGNNNNNCTC	2 cut(s)	745, 777
BpmI	CTGGAG	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 443
Bse118I	RCCGGY	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	352, 736
Bse3DI	GCAATG	1 cut(s)	530
BseBI	CCWGG	2 cut(s)	19, 67
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	3 cut(s)	413, 709, 748
BseLI	CCNNNNNNNGG	2 cut(s)	55, 443
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	87, 819
BseNI	ACTGG	2 cut(s)	352, 736
BseRI	GAGGAG	1 cut(s)	318
BseXI	GCAGC	5 cut(s)	197, 321, 439, 580, 583
BseYI	CCCAGC	2 cut(s)	139, 287
BshFI	GGCC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	2 cut(s)	683, 834
BslI	CCNNNNNNNGG	2 cut(s)	55, 443
BsmAI	GTCTC	2 cut(s)	105, 379
BsmFI	GGGAC	2 cut(s)	683, 834
BsnI	GGCC	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	62, 235, 658, 720, 924
BspACI	CCGC	2 cut(s)	49, 89
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	88, 818
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	2 cut(s)	187, 601
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	57, 653
BsrDI	GCAATG	1 cut(s)	530
BsrFI	RCCGGY	1 cut(s)	310
BsrI	ACTGG	2 cut(s)	352, 736
BssAI	RCCGGY	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	5 cut(s)	62, 235, 658, 720, 924
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	19, 67
Bst4CI	ACNGT	3 cut(s)	25, 135, 676
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	96, 805
BstF5I	GGATG	3 cut(s)	413, 709, 748
BstKTI	GATC	5 cut(s)	65, 238, 661, 723, 927
BstMAI	GTCTC	2 cut(s)	105, 379
BstMBI	GATC	5 cut(s)	62, 235, 658, 720, 924
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	19, 67
BstSCI	CCNGG	2 cut(s)	17, 65
BstSFI	CTRYAG	2 cut(s)	183, 597
BstV1I	GCAGC	5 cut(s)	197, 321, 439, 580, 583
BstV2I	GAAGAC	3 cut(s)	152, 794, 807
BsuRI	GGCC	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	413, 709, 748
BtsI	GCAGTG	1 cut(s)	553
BtsIMutI	CAGTG	1 cut(s)	553
Cac8I	GCNNGC	1 cut(s)	93
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	310
Cfr13I	GGNCC	5 cut(s)	21, 58, 308, 434, 464
Csp6I	GTAC	4 cut(s)	362, 638, 838, 934
CviAII	CATG	4 cut(s)	272, 485, 784, 835
CviJI	RGCY	8 cut(s)	95, 310, 353, 452, 593, 718, 738, 761
CviKI_1	RGCY	8 cut(s)	95, 310, 353, 452, 593, 718, 738, 761
CviQI	GTAC	4 cut(s)	362, 638, 838, 934
DdeI	CTNAG	2 cut(s)	96, 805
DpnI	GATC	5 cut(s)	64, 237, 660, 722, 926
DpnII	GATC	5 cut(s)	62, 235, 658, 720, 924
DraI	TTTAAA	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	417
Eco32I	GATATC	1 cut(s)	565
Eco47I	GGWCC	4 cut(s)	21, 58, 434, 464
Eco57I	CTGAAG	2 cut(s)	201, 927
EcoRII	CCWGG	2 cut(s)	17, 65
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	4 cut(s)	275, 488, 787, 838
FaqI	GGGAC	2 cut(s)	683, 834
FatI	CATG	4 cut(s)	271, 484, 783, 834
FbaI	TGATCA	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	5 cut(s)	186, 335, 453, 594, 597
FokI	GGATG	3 cut(s)	400, 696, 755
Fsp4HI	GCNGC	5 cut(s)	186, 335, 453, 594, 597
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	5 cut(s)	186, 335, 453, 594, 597
GsaI	CCCAGC	2 cut(s)	143, 291
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	4 cut(s)	275, 488, 787, 838
HincII	GTYRAC	3 cut(s)	46, 729, 820
HindII	GTYRAC	3 cut(s)	46, 729, 820
HinfI	GANTC	6 cut(s)	98, 206, 266, 803, 847, 896
HpaI	GTTAAC	1 cut(s)	729
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	3 cut(s)	46, 729, 820
Hpy188I	TCNGA	5 cut(s)	62, 220, 235, 742, 808
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	3 cut(s)	46, 729, 820
HpyAV	CCTTC	3 cut(s)	137, 188, 902
HpyCH4III	ACNGT	3 cut(s)	25, 135, 676
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	185, 227, 599, 767
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	2 cut(s)	96, 805
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	4 cut(s)	275, 488, 787, 838
Ksp22I	TGATCA	1 cut(s)	235
KspAI	GTTAAC	1 cut(s)	729
Kzo9I	GATC	5 cut(s)	62, 235, 658, 720, 924
LmnI	GCTCC	2 cut(s)	350, 753
Lsp1109I	GCAGC	5 cut(s)	197, 321, 439, 580, 583
LweI	GCATC	2 cut(s)	124, 422
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	4 cut(s)	38, 81, 499, 579
MalI	GATC	5 cut(s)	64, 237, 660, 722, 926
MboI	GATC	5 cut(s)	62, 235, 658, 720, 924
MluCI	AATT	5 cut(s)	144, 229, 357, 860, 869
MlyI	GAGTC	3 cut(s)	107, 797, 856
MnlI	CCTC	3 cut(s)	296, 299, 617
MseI	TTAA	4 cut(s)	408, 728, 842, 867
MslI	CAYNNNNRTG	1 cut(s)	833
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	19, 67
MvaI	CCWGG	2 cut(s)	19, 67
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	5 cut(s)	62, 235, 658, 720, 924
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	4 cut(s)	275, 488, 787, 838
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	206, 266, 896
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	187, 336, 454, 595, 598
PleI	GAGTC	3 cut(s)	106, 797, 855
PpsI	GAGTC	3 cut(s)	106, 797, 855
Psp6I	CCWGG	2 cut(s)	17, 65
PspFI	CCCAGC	2 cut(s)	139, 287
PspGI	CCWGG	2 cut(s)	17, 65
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	5 cut(s)	21, 58, 308, 434, 464
PstI	CTGCAG	2 cut(s)	187, 601
PstNI	CAGNNNCTG	1 cut(s)	139
RsaI	GTAC	4 cut(s)	363, 639, 839, 935
RsaNI	GTAC	4 cut(s)	362, 638, 838, 934
RseI	CAYNNNNRTG	1 cut(s)	833
SalI	GTCGAC	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	408, 728, 842, 867
SatI	GCNGC	5 cut(s)	186, 335, 453, 594, 597
Sau3AI	GATC	5 cut(s)	62, 235, 658, 720, 924
Sau96I	GGNCC	5 cut(s)	21, 58, 308, 434, 464
SchI	GAGTC	3 cut(s)	107, 797, 856
ScrFI	CCNGG	2 cut(s)	19, 67
SetI	ASST	8 cut(s)	45, 71, 97, 355, 595, 720, 740, 913
SfaNI	GCATC	2 cut(s)	124, 422
SfcI	CTRYAG	2 cut(s)	183, 597
SinI	GGWCC	4 cut(s)	21, 58, 434, 464
SmiMI	CAYNNNNRTG	1 cut(s)	833
Sse9I	AATT	5 cut(s)	144, 229, 357, 860, 869
SsiI	CCGC	2 cut(s)	49, 89
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	17, 65
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	3 cut(s)	25, 135, 676
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	4 cut(s)	151, 301, 772, 819
TasI	AATT	5 cut(s)	144, 229, 357, 860, 869
TatI	WGTACW	3 cut(s)	361, 837, 933
TfiI	GAWTC	3 cut(s)	206, 266, 896
Tru1I	TTAA	4 cut(s)	408, 728, 842, 867
Tru9I	TTAA	4 cut(s)	408, 728, 842, 867
TscAI	CASTG	1 cut(s)	560
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	5 cut(s)	185, 334, 452, 593, 596
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	6 cut(s)	207, 288, 637, 698, 759, 800
TspGWI	ACGGA	2 cut(s)	677, 766
TspRI	CASTG	1 cut(s)	560
VpaK11BI	GGWCC	4 cut(s)	21, 58, 434, 464
XapI	RAATTY	4 cut(s)	144, 229, 860, 869
XmiI	GTMKAC	1 cut(s)	819
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.