Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

25213696 .. 25215971

Gene Structure 2276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1171700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCGTCCATCATTTCCAGGACCGTTAACCATCTCCGCCACGTCAACCGCTCAGTGATCCGATCCGGATTGCCGAACCCACCGCCACCGCTCGCCGACTCTCTCCAAAATCGGCATCTTCCACTCCTCGGACAGTCGTTGGCGATTTATCAAAGATGTCTTTTTTCAACGACACCCAATACTACGGCGGAAAATCAAGGAAACCCTGAACCAAAAACCTCGGAAAATGCAAATTCTGGTCATTCTGGTAATTCTGGTGATTCTGGTGAAGGGAACAAGTCTGGGGAATCACATGAGAGTAGTAATGCGGGAAAATCTATTCGCGGAGGGCCCGTTTCGTGGTTGAGTTTTCTGCTGCTGGTGGCGACTGGAGCCGGAATTATACTCTATTACGACAAGGAAAAGAGACAACATATTGAAGAAATATTTAAGGCGTCCAAGGAAGTAAAGCAAGGACCATCTGTGGGAAAAGCTGCCATTGGGGGTCCATTCAATCTTATCAACCATGATGGGAAGCGAGTGACTGAAAAAGATTTTTTGGGGAATTGGACATTGATGTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGCTAGTAAAGCTAGCTGCTGCGGTTGATAAATTAGAGAAAGATGCAGGGATTGAGATAGTGCCCCTTTTCATATCTGTTGATCCTGAAAGGGATACCGTTGAGCAAGTCTGTGAATATGTGAAAGAGTTTCATCCAAAGCTGATTGGGTTAACTGGTAACCCTGATGAGATACGGAGTGTTGCTCGTGCATATCGTGTGTACTATATGAAAACAACAGAAGAAGACTCAGATTATCTTGTGGACCATTCCATAGTCATGTACTTGATGAGCCCCGAGATGGAATTTGTGAAATTTTTCGGAAAGAACAACAATGTTGATTCACTTGCTGAAGGTATAACGAAAGAGATAAAGCAGTACAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

322

Amino Acids

35.53

Weight (kDa)

6.08

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	161 - 295	3.4e-51	SCO1/SenC
AhpC-TSA	PF00578	164 - 282	6.7e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	51, 91
AccII	CGCG	1 cut(s)	324
AccIII	TCCGGA	1 cut(s)	65
AciI	CCGC	8 cut(s)	37, 49, 83, 89, 188, 308, 324, 620
AclWI	GGATC	3 cut(s)	52, 57, 674
AcsI	RAATTY	3 cut(s)	232, 881, 890
AcuI	CTGAAG	1 cut(s)	948
AcyI	GRCGYC	2 cut(s)	5, 434
AfaI	GTAC	4 cut(s)	560, 800, 860, 956
AfiI	CCNNNNNNNGG	4 cut(s)	128, 339, 464, 877
AgsI	TTSAA	3 cut(s)	168, 419, 493
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	17
AluBI	AGCT	5 cut(s)	473, 601, 610, 614, 739
AluI	AGCT	5 cut(s)	473, 601, 610, 614, 739
Alw26I	GTCTC	1 cut(s)	400
AlwI	GGATC	3 cut(s)	52, 57, 674
Ama87I	CYCGRG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	65
AoxI	GGCC	1 cut(s)	329
ApaI	GGGCCC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	355, 473, 614, 617
ApoI	RAATTY	3 cut(s)	232, 881, 890
Asp700I	GAANNNNTTC	1 cut(s)	893
AspS9I	GGNCC	6 cut(s)	21, 329, 330, 455, 485, 841
AsuHPI	GGTGA	2 cut(s)	269, 278
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	4 cut(s)	21, 455, 485, 841
BaeGI	GKGCMC	2 cut(s)	333, 663
BanII	GRGCYC	2 cut(s)	333, 872
BauI	CACGAG	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	828
BbvI	GCAGC	4 cut(s)	342, 460, 601, 604
BccI	CCATC	5 cut(s)	17, 39, 466, 503, 871
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	685
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	2 cut(s)	602, 611
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	4 cut(s)	356, 474, 615, 618
BlsI	GCNGC	4 cut(s)	357, 475, 616, 619
Bme1390I	CCNGG	1 cut(s)	19
Bme18I	GGWCC	4 cut(s)	21, 455, 485, 841
BmeT110I	CYCGRG	1 cut(s)	872
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	6 cut(s)	21, 329, 330, 455, 485, 841
BmiI	GGNNCC	3 cut(s)	331, 373, 486
BmrFI	CCNGG	1 cut(s)	19
BmsI	GCATC	2 cut(s)	124, 631
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	828
BplI	GAGNNNNNCTC	2 cut(s)	766, 798
BpmI	CTGGAG	1 cut(s)	390
BsaHI	GRCGYC	2 cut(s)	5, 434
BsaJI	CCNNGG	3 cut(s)	127, 219, 438
BsaWI	WCCGGW	1 cut(s)	65
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 339, 464, 877
Bse1I	ACTGG	2 cut(s)	373, 757
BseAI	TCCGGA	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	19
BseDI	CCNNGG	3 cut(s)	127, 219, 438
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	4 cut(s)	128, 339, 464, 877
BseMII	CTCAG	2 cut(s)	66, 840
BseNI	ACTGG	2 cut(s)	373, 757
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	2 cut(s)	333, 663
BseXI	GCAGC	4 cut(s)	342, 460, 601, 604
Bsh1236I	CGCG	1 cut(s)	324
BshFI	GGCC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	2 cut(s)	66, 375
BslI	CCNNNNNNNGG	4 cut(s)	128, 339, 464, 877
BsmAI	GTCTC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	872
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	3 cut(s)	333, 663, 872
Bsp13I	TCCGGA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	57, 62, 679
BspACI	CCGC	8 cut(s)	37, 49, 83, 89, 188, 308, 324, 620
BspANI	GGCC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	65, 839
BspEI	TCCGGA	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	331, 373, 486
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	3 cut(s)	52, 57, 674
BsrBI	CCGCTC	2 cut(s)	51, 91
BsrI	ACTGG	2 cut(s)	373, 757
BssECI	CCNNGG	3 cut(s)	127, 219, 438
BssMI	GATC	3 cut(s)	57, 62, 679
BssNI	GRCGYC	2 cut(s)	5, 434
BssSI	CACGAG	1 cut(s)	783
BssT1I	CCWWGG	1 cut(s)	438
Bst2BI	CACGAG	1 cut(s)	783
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	25, 135, 697
BstACI	GRCGYC	2 cut(s)	5, 434
BstC8I	GCNNGC	2 cut(s)	93, 612
BstDEI	CTNAG	2 cut(s)	52, 826
BstEII	GGTNACC	1 cut(s)	755
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	324
BstKTI	GATC	3 cut(s)	60, 65, 682
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	3 cut(s)	57, 62, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 607
BstNI	CCWGG	1 cut(s)	19
BstPI	GGTNACC	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	17
BstSLI	GKGCMC	2 cut(s)	333, 663
BstUI	CGCG	1 cut(s)	324
BstV1I	GCAGC	4 cut(s)	342, 460, 601, 604
BstV2I	GAAGAC	1 cut(s)	828
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	2 cut(s)	60, 574
Cac8I	GCNNGC	2 cut(s)	93, 612
Cfr13I	GGNCC	6 cut(s)	21, 329, 330, 455, 485, 841
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	4 cut(s)	559, 799, 859, 955
CviAII	CATG	3 cut(s)	293, 506, 856
CviJI	RGCY	8 cut(s)	331, 374, 473, 601, 610, 614, 739, 870
CviKI_1	RGCY	8 cut(s)	331, 374, 473, 601, 610, 614, 739, 870
CviQI	GTAC	4 cut(s)	559, 799, 859, 955
DdeI	CTNAG	2 cut(s)	52, 826
DpnI	GATC	3 cut(s)	59, 64, 681
DpnII	GATC	3 cut(s)	57, 62, 679
EciI	GGCGGA	2 cut(s)	26, 203
Eco130I	CCWWGG	1 cut(s)	438
Eco24I	GRGCYC	2 cut(s)	333, 872
Eco32I	GATATC	1 cut(s)	586
Eco47I	GGWCC	4 cut(s)	21, 455, 485, 841
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	872
Eco91I	GGTNACC	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	17
EcoRV	GATATC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	438
EcoT38I	GRGCYC	2 cut(s)	333, 872
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	3 cut(s)	296, 509, 859
FatI	CATG	3 cut(s)	292, 505, 855
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	356, 474, 615, 618
FokI	GGATG	1 cut(s)	717
FriOI	GRGCYC	2 cut(s)	333, 872
Fsp4HI	GCNGC	4 cut(s)	356, 474, 615, 618
FspBI	CTAG	2 cut(s)	602, 611
GluI	GCNGC	4 cut(s)	356, 474, 615, 618
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	2 cut(s)	66, 375
HgaI	GACGC	1 cut(s)	423
Hin1I	GRCGYC	2 cut(s)	5, 434
Hin1II	CATG	3 cut(s)	296, 509, 859
HincII	GTYRAC	3 cut(s)	28, 46, 750
HindII	GTYRAC	3 cut(s)	28, 46, 750
HinfI	GANTC	5 cut(s)	98, 260, 287, 824, 917
HpaI	GTTAAC	2 cut(s)	28, 750
HpaII	CCGG	2 cut(s)	66, 375
HphI	GGTGA	2 cut(s)	269, 278
Hpy166II	GTNNAC	5 cut(s)	28, 46, 750, 799, 841
Hpy188I	TCNGA	5 cut(s)	62, 131, 223, 829, 899
Hpy188III	TCNNGA	2 cut(s)	66, 683
Hpy8I	GTNNAC	5 cut(s)	28, 46, 750, 799, 841
HpyAV	CCTTC	2 cut(s)	263, 923
HpyCH4III	ACNGT	3 cut(s)	25, 135, 697
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	3 cut(s)	230, 644, 788
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 607
HpyF3I	CTNAG	2 cut(s)	52, 826
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	2 cut(s)	5, 434
Hsp92II	CATG	3 cut(s)	296, 509, 859
Kpn2I	TCCGGA	1 cut(s)	65
KspAI	GTTAAC	2 cut(s)	28, 750
Kzo9I	GATC	3 cut(s)	57, 62, 679
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	4 cut(s)	342, 460, 601, 604
LweI	GCATC	2 cut(s)	124, 631
MaeI	CTAG	2 cut(s)	602, 611
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	2 cut(s)	520, 755
MalI	GATC	3 cut(s)	59, 64, 681
MbiI	CCGCTC	2 cut(s)	51, 91
MboI	GATC	3 cut(s)	57, 62, 679
MboII	GAAGA	4 cut(s)	110, 431, 830, 833
MhlI	GDGCHC	3 cut(s)	333, 663, 872
MluCI	AATT	7 cut(s)	232, 250, 378, 544, 629, 881, 890
MlyI	GAGTC	2 cut(s)	92, 818
MnlI	CCTC	3 cut(s)	137, 229, 320
MroI	TCCGGA	1 cut(s)	65
MroXI	GAANNNNTTC	1 cut(s)	893
MseI	TTAA	3 cut(s)	27, 429, 749
MslI	CAYNNNNRTG	1 cut(s)	854
MspI	CCGG	2 cut(s)	66, 375
MspR9I	CCNGG	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	19
MvnI	CGCG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	371, 607
NdeII	GATC	3 cut(s)	57, 62, 679
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	296, 509, 859
NlaIV	GGNNCC	3 cut(s)	331, 373, 486
NmuCI	GTSAC	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	790
PdmI	GAANNNNTTC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	260, 287, 917
PfoI	TCCNGGA	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	357, 475, 616, 619
PleI	GAGTC	2 cut(s)	92, 818
PpsI	GAGTC	2 cut(s)	92, 818
Psp6I	CCWGG	1 cut(s)	17
PspEI	GGTNACC	1 cut(s)	755
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	331, 373, 486
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	6 cut(s)	21, 329, 330, 455, 485, 841
RsaI	GTAC	4 cut(s)	560, 800, 860, 956
RsaNI	GTAC	4 cut(s)	559, 799, 859, 955
RseI	CAYNNNNRTG	1 cut(s)	854
SaqAI	TTAA	3 cut(s)	27, 429, 749
SatI	GCNGC	4 cut(s)	356, 474, 615, 618
Sau3AI	GATC	3 cut(s)	57, 62, 679
Sau96I	GGNCC	6 cut(s)	21, 329, 330, 455, 485, 841
SchI	GAGTC	2 cut(s)	92, 818
ScrFI	CCNGG	1 cut(s)	19
SduI	GDGCHC	3 cut(s)	333, 663, 872
SetI	ASST	8 cut(s)	45, 221, 475, 603, 612, 616, 741, 934
SfaNI	GCATC	2 cut(s)	124, 631
SinI	GGWCC	4 cut(s)	21, 455, 485, 841
SmiMI	CAYNNNNRTG	1 cut(s)	854
Sse9I	AATT	7 cut(s)	232, 250, 378, 544, 629, 881, 890
SsiI	CCGC	8 cut(s)	37, 49, 83, 89, 188, 308, 324, 620
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	2 cut(s)	602, 611
StyD4I	CCNGG	1 cut(s)	17
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	3 cut(s)	25, 135, 697
TaiI	ACGT	1 cut(s)	45
TasI	AATT	7 cut(s)	232, 250, 378, 544, 629, 881, 890
TatI	WGTACW	4 cut(s)	558, 798, 858, 954
TfiI	GAWTC	3 cut(s)	260, 287, 917
Tru1I	TTAA	3 cut(s)	27, 429, 749
Tru9I	TTAA	3 cut(s)	27, 429, 749
TscAI	CASTG	2 cut(s)	60, 581
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	4 cut(s)	355, 473, 614, 617
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	3 cut(s)	658, 719, 821
TspGWI	ACGGA	1 cut(s)	787
TspRI	CASTG	2 cut(s)	60, 581
VpaK11BI	GGWCC	4 cut(s)	21, 455, 485, 841
XapI	RAATTY	3 cut(s)	232, 881, 890
XmnI	GAANNNNTTC	1 cut(s)	893
XspI	CTAG	2 cut(s)	602, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.