Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Reverse (-)

32513852 .. 32517990

Gene Structure 4139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCTCAGGATTGTGAAGCATCTTCGGCACGCAAATCGATCTTTGGTGAGATGTGGGCTGCCAGTGCTATCGCCTCCACTCACTGAGGGTCTCCAGCATCAGCATCTTCCACTCCTTCAACAGTCGTTGACGATTTATCAAAGATGTCTATTTTCAACAACTACCACTGCTTCTGCAAATCAAGGAGAATCAAAATCAAAAACTTCTGAAAAAGCTAATTCTGATGAAGGGAGCAAGTCCGGGGAATCACATGAAAGCAATGCTGGAAAATCTGTCCGTGGAGGGCCTGTTTCGTGGTTGAGCTTTTTGTTGCTCATAGCAACCGGGGCAGGAATCATCCTCTACTATGACAAGGAAAAGAGACAGCATATTCAAGACATATTTAATGCATCGAAGGAGGTAAAGCAAGGACCATCTGCGGGATTAGCTGCTATTGGAGGTCCATTCAATCTTATCAACCACGATGGGAAGCGTGTAACTGAAAAAGACTTTCTGGGGAAATGGACGTTAATCTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTACAGAAATTAGCCACTGCAGTTGATAAAATAAAGGAAAATGCAGGGATTGAGATAGTCCCCGTGTTCATCTCTGTTGATCCTGAAAGAGATACTGTTGAGCAAGTCCGTGAATATGTCAAAGAGTTTCATCCAAGGTTGATTGGGTTAACGGGTAACTCGGATGAGATACACAGTGTGGCCCGTGCCTATCGTGTATATTATATGAAGACAACAGAAGAAGATTCAGATTACCTTGTTGATCATTCTATAGTCATGTACTTGATGAGCCCTACTATGGACTTTGTTAAATTTTTTGGGAAGAACAATGATGTTGATTCACTTGCTGATGGCATAACCAAAGAGATAAAGCAGTACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

306

Amino Acids

34.22

Weight (kDa)

6.84

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	146 - 279	3.5e-52	SCO1/SenC
AhpC-TSA	PF00578	149 - 267	2e-10	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	1 cut(s)	845
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	2 cut(s)	815, 911
AfiI	CCNNNNNNNGG	2 cut(s)	419, 832
AgsI	TTSAA	4 cut(s)	119, 156, 374, 448
AluBI	AGCT	3 cut(s)	215, 303, 428
AluI	AGCT	3 cut(s)	215, 303, 428
Alw26I	GTCTC	2 cut(s)	95, 355
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	2 cut(s)	284, 735
ApeKI	GCWGC	2 cut(s)	58, 428
ApoI	RAATTY	1 cut(s)	845
AspS9I	GGNCC	4 cut(s)	284, 410, 440, 736
AsuC2I	CCSGG	2 cut(s)	241, 325
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	410, 440
BanII	GRGCYC	1 cut(s)	827
BbsI	GAAGAC	1 cut(s)	770
BbvI	GCAGC	2 cut(s)	45, 415
BccI	CCATC	3 cut(s)	421, 458, 878
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BclI	TGATCA	1 cut(s)	796
BcnI	CCSGG	2 cut(s)	241, 325
BcoDI	GTCTC	2 cut(s)	95, 355
BfmI	CTRYAG	2 cut(s)	573, 804
BisI	GCNGC	2 cut(s)	59, 429
BlsI	GCNGC	2 cut(s)	60, 430
Bme1390I	CCNGG	2 cut(s)	241, 325
Bme18I	GGWCC	2 cut(s)	410, 440
BmgT120I	GGNCC	4 cut(s)	284, 410, 440, 736
BmrFI	CCNGG	2 cut(s)	241, 325
BmsI	GCATC	4 cut(s)	28, 106, 112, 398
BpiI	GAAGAC	1 cut(s)	770
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	241, 325
Bsa29I	ATCGAT	1 cut(s)	37
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	240, 277, 324, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 832
Bse1I	ACTGG	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	37
BseDI	CCNNGG	4 cut(s)	240, 277, 324, 689
BseGI	GGATG	3 cut(s)	336, 685, 724
BseLI	CCNNNNNNNGG	2 cut(s)	419, 832
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	19, 75
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	45, 415
BshFI	GGCC	2 cut(s)	286, 737
BshVI	ATCGAT	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	240, 324
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	2 cut(s)	419, 832
BsmAI	GTCTC	2 cut(s)	95, 355
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	2 cut(s)	286, 737
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp143I	GATC	3 cut(s)	38, 634, 796
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	2 cut(s)	286, 737
BspCNI	CTCAG	2 cut(s)	18, 76
BspDI	ATCGAT	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	240, 277, 324, 689
BssMI	GATC	3 cut(s)	38, 634, 796
BssT1I	CCWWGG	1 cut(s)	689
Bst4CI	ACNGT	3 cut(s)	123, 652, 731
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	5, 84
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	336, 685, 724
BstKTI	GATC	3 cut(s)	41, 637, 799
BstMAI	GTCTC	2 cut(s)	95, 355
BstMBI	GATC	3 cut(s)	38, 634, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 64, 326, 425
BstSCI	CCNGG	2 cut(s)	239, 323
BstSFI	CTRYAG	2 cut(s)	573, 804
BstV1I	GCAGC	2 cut(s)	45, 415
BstV2I	GAAGAC	1 cut(s)	770
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	286, 737
BsuTUI	ATCGAT	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	277
BtsCI	GGATG	3 cut(s)	336, 685, 724
BtsI	GCAGTG	3 cut(s)	165, 529, 570
BtsIMutI	CAGTG	6 cut(s)	69, 81, 165, 529, 570, 736
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	4 cut(s)	284, 410, 440, 736
ClaI	ATCGAT	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	814, 910
CspCI	CAANNNNNGTGG	2 cut(s)	559, 594
CviAII	CATG	2 cut(s)	251, 811
CviJI	RGCY	8 cut(s)	58, 215, 286, 303, 428, 569, 737, 825
CviKI_1	RGCY	8 cut(s)	58, 215, 286, 303, 428, 569, 737, 825
CviQI	GTAC	2 cut(s)	814, 910
DdeI	CTNAG	2 cut(s)	5, 84
DpnI	GATC	3 cut(s)	40, 636, 798
DpnII	GATC	3 cut(s)	38, 634, 796
DraIII	CACNNNGTG	1 cut(s)	733
Eco130I	CCWWGG	1 cut(s)	689
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	1 cut(s)	95
Eco32I	GATATC	1 cut(s)	541
Eco47I	GGWCC	2 cut(s)	410, 440
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	689
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	1 cut(s)	827
ErhI	CCWWGG	1 cut(s)	689
FaeI	CATG	2 cut(s)	254, 814
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	2 cut(s)	250, 810
FauI	CCCGC	1 cut(s)	412
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	2 cut(s)	59, 429
FokI	GGATG	3 cut(s)	323, 672, 731
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	2 cut(s)	59, 429
GluI	GCNGC	2 cut(s)	59, 429
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	286, 737
HapII	CCGG	2 cut(s)	240, 324
Hin1II	CATG	2 cut(s)	254, 814
HincII	GTYRAC	2 cut(s)	129, 705
HindII	GTYRAC	2 cut(s)	129, 705
HinfI	GANTC	5 cut(s)	188, 245, 333, 779, 872
HpaI	GTTAAC	1 cut(s)	705
HpaII	CCGG	2 cut(s)	240, 324
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	129, 705
Hpy188I	TCNGA	4 cut(s)	208, 223, 718, 784
Hpy188III	TCNNGA	3 cut(s)	7, 374, 638
Hpy8I	GTNNAC	2 cut(s)	129, 705
HpyAV	CCTTC	3 cut(s)	125, 221, 388
HpyCH4III	ACNGT	3 cut(s)	123, 652, 731
HpyCH4IV	ACGT	1 cut(s)	506
HpyCH4V	TGCA	4 cut(s)	176, 389, 575, 599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 64, 326, 425
HpyF3I	CTNAG	2 cut(s)	5, 84
HpySE526I	ACGT	1 cut(s)	506
Hsp92II	CATG	2 cut(s)	254, 814
Ksp22I	TGATCA	1 cut(s)	796
KspAI	GTTAAC	1 cut(s)	705
Kzo9I	GATC	3 cut(s)	38, 634, 796
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	45, 415
LweI	GCATC	4 cut(s)	28, 106, 112, 398
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	3 cut(s)	475, 555, 710
MalI	GATC	3 cut(s)	40, 636, 798
MboI	GATC	3 cut(s)	38, 634, 796
MboII	GAAGA	6 cut(s)	14, 98, 775, 785, 788, 868
MhlI	GDGCHC	1 cut(s)	827
MluCI	AATT	3 cut(s)	217, 563, 845
MnlI	CCTC	6 cut(s)	79, 84, 275, 350, 391, 431
Mph1103I	ATGCAT	1 cut(s)	391
MseI	TTAA	4 cut(s)	384, 509, 704, 843
MspI	CCGG	2 cut(s)	240, 324
MspR9I	CCNGG	2 cut(s)	241, 325
MwoI	GCNNNNNNNGC	4 cut(s)	25, 64, 326, 425
NciI	CCSGG	2 cut(s)	241, 325
NdeII	GATC	3 cut(s)	38, 634, 796
NlaIII	CATG	2 cut(s)	254, 814
NsiI	ATGCAT	1 cut(s)	391
PfeI	GAWTC	5 cut(s)	188, 245, 333, 779, 872
PkrI	GCNGC	2 cut(s)	60, 430
PspPI	GGNCC	4 cut(s)	284, 410, 440, 736
PstI	CTGCAG	1 cut(s)	577
RsaI	GTAC	2 cut(s)	815, 911
RsaNI	GTAC	2 cut(s)	814, 910
SaqAI	TTAA	4 cut(s)	384, 509, 704, 843
SatI	GCNGC	2 cut(s)	59, 429
Sau3AI	GATC	3 cut(s)	38, 634, 796
Sau96I	GGNCC	4 cut(s)	284, 410, 440, 736
ScrFI	CCNGG	2 cut(s)	241, 325
SduI	GDGCHC	1 cut(s)	827
SetI	ASST	8 cut(s)	217, 305, 402, 430, 442, 509, 695, 792
SfaNI	GCATC	4 cut(s)	28, 106, 112, 398
SfcI	CTRYAG	2 cut(s)	573, 804
SinI	GGWCC	2 cut(s)	410, 440
Sse9I	AATT	3 cut(s)	217, 563, 845
SsiI	CCGC	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	239, 323
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	3 cut(s)	123, 652, 731
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	37, 392
TasI	AATT	3 cut(s)	217, 563, 845
TatI	WGTACW	2 cut(s)	813, 909
TfiI	GAWTC	5 cut(s)	188, 245, 333, 779, 872
Tru1I	TTAA	4 cut(s)	384, 509, 704, 843
Tru9I	TTAA	4 cut(s)	384, 509, 704, 843
TscAI	CASTG	6 cut(s)	69, 88, 172, 536, 577, 736
TseI	GCWGC	2 cut(s)	58, 428
TspDTI	ATGAA	5 cut(s)	240, 267, 613, 674, 776
TspGWI	ACGGA	2 cut(s)	266, 653
TspRI	CASTG	6 cut(s)	69, 88, 172, 536, 577, 736
VpaK11BI	GGWCC	2 cut(s)	410, 440
XapI	RAATTY	1 cut(s)	845
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.