Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013096

Physical Location & Seq

Genomic Coordinates Forward (+)

35877420 .. 35881050

Gene Structure 3631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002532

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTCAGGATTGTGAAGCATCTTCGGCACGCCAATCGATCTTTGGTGAGATGTGGGCTGCCAGTGCTATCGTCTCCACTCACTGAGGGTCTTCAGCATCAGCATCTTCCACTCCTTCAACAGTCGCTGACGATTTATCAAAGATGTCTATTTTCAACAACTACCACTACTTCTGCAAATCAAGGAGAATCAAAATCAAAAACTTCTGAAAATGCTAATTCTGATGAAGGGAGCAAGTCCGGGGAATCACATGAAAGCAGTAATGCTGGAAAATCTGTCCGTGGAGGGCCTGTTTCGTGGTTGAGCTTTTTGTTGCTTGTAGCAACCGGGGCAGGAATCATCCTCTACTATGACAAGGAAAAGAGACAGCATATTCAAGACATATTTAATGCATCCAAGGAGGTAAAGCAAGGACCATCTGCTGGATTAGCTGCTATTGGAGGTCCATTCAATCTTATCAACCACGATGGGAAGCGTGTAACTGAAAAAGACTTTCTGGGGAAATGGACGTTAATCTACTTTGGTTTCACTCACTGCCCTGATATCTGCCCAGATGAGTTGCAGAAACTAGCCACTGCAGTTGATAAAATAAAGGACAATGCAGGGATTGAGATAGTCCCCGTGTTCATCTCTGTTGATCCTGAAAGAGATACTGTTGAGCAAGTCTGTGAATATGTCAAAGAGTTTCATCCAAGGTTGATTGGGTTAACGGGTAACTCGGATGAGATACACAGTGTGGCCCGTGCCTATCGTGTATATTATATGAAGACAACAGAAGAAGATTCAGATTACCTTGTTGATCATTCCATAGTCATGTACTTGATGAGCCCTACTATGGACTTTGTTAAATTTTTTGGGAAGAACAATGATGTTGATTCACTTGCTGATGGCATAACCAAAGAGATAAAGCAGTACAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008535 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016043 GO:0017004 GO:0022414 GO:0022607 GO:0032501 GO:0032502 GO:0033108 GO:0033617 GO:0034622 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SCO1-SenC

Protein Analysis

308

Amino Acids

34.23

Weight (kDa)

6.42

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SCO1-SenC	PF02630	147 - 280	3.6e-51	SCO1/SenC
AhpC-TSA	PF00578	150 - 268	6.6e-10	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08950
fragaria_vesca	FvH4_1g26950 FvH4_1g26950
malus_domestica	MD00G1061600.v1.1 MD12G1171700.v1.1
prunus_persica	Prupe.6G279900_v2.0.a1
pyrus_communis	pycom04g14250 pycom12g16300
rosa_chinensis	RchiOBHm_Chr7g0216861
rosa_laevigata	RLG00000002532
rosa_multiflora	Rmu_sc0000125.1_g000010
rosa_roxburghii	Rroxscaffold_3G00242810
rosa_rugosa	Rorug07G0163800
rosa_samantha	Rh7AG303300 Rh7BG295200 Rh7CG321900 Rh7DG303800
rosa_wichuraiana	Rw7G025800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AclWI	GGATC	1 cut(s)	632
AcsI	RAATTY	1 cut(s)	848
AcuI	CTGAAG	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	736
AfaI	GTAC	2 cut(s)	818, 914
AfiI	CCNNNNNNNGG	2 cut(s)	422, 835
AgsI	TTSAA	4 cut(s)	119, 156, 377, 451
AluBI	AGCT	2 cut(s)	306, 431
AluI	AGCT	2 cut(s)	306, 431
Alw26I	GTCTC	2 cut(s)	78, 358
AlwI	GGATC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	2 cut(s)	287, 738
ApeKI	GCWGC	2 cut(s)	58, 431
ApoI	RAATTY	1 cut(s)	848
AspS9I	GGNCC	4 cut(s)	287, 413, 443, 739
AsuC2I	CCSGG	2 cut(s)	241, 328
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	2 cut(s)	413, 443
BanII	GRGCYC	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	83, 773
BbvI	GCAGC	2 cut(s)	45, 418
BccI	CCATC	3 cut(s)	424, 461, 881
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	241, 328
BcoDI	GTCTC	2 cut(s)	78, 358
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	2 cut(s)	59, 432
BlsI	GCNGC	2 cut(s)	60, 433
Bme1390I	CCNGG	2 cut(s)	241, 328
Bme18I	GGWCC	2 cut(s)	413, 443
BmgT120I	GGNCC	4 cut(s)	287, 413, 443, 739
BmrFI	CCNGG	2 cut(s)	241, 328
BmsI	GCATC	4 cut(s)	28, 106, 112, 401
BpiI	GAAGAC	2 cut(s)	83, 773
Bpu10I	CCTNAGC	1 cut(s)	5
BpuMI	CCSGG	2 cut(s)	241, 328
Bsa29I	ATCGAT	1 cut(s)	37
BsaJI	CCNNGG	5 cut(s)	240, 280, 327, 396, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 835
Bse1I	ACTGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	37
BseDI	CCNNGG	5 cut(s)	240, 280, 327, 396, 692
BseGI	GGATG	4 cut(s)	339, 392, 688, 727
BseLI	CCNNNNNNNGG	2 cut(s)	422, 835
BseMII	CTCAG	2 cut(s)	19, 75
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	45, 418
BshFI	GGCC	2 cut(s)	289, 740
BshVI	ATCGAT	1 cut(s)	37
BsiSI	CCGG	2 cut(s)	240, 327
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	2 cut(s)	422, 835
BsmAI	GTCTC	2 cut(s)	78, 358
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	289, 740
Bsp1286I	GDGCHC	1 cut(s)	830
Bsp143I	GATC	3 cut(s)	38, 637, 799
BspANI	GGCC	2 cut(s)	289, 740
BspCNI	CTCAG	2 cut(s)	18, 76
BspDI	ATCGAT	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	5 cut(s)	240, 280, 327, 396, 692
BssMI	GATC	3 cut(s)	38, 637, 799
BssT1I	CCWWGG	2 cut(s)	396, 692
Bst4CI	ACNGT	3 cut(s)	123, 655, 734
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	5, 84
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	4 cut(s)	339, 392, 688, 727
BstKTI	GATC	3 cut(s)	41, 640, 802
BstMAI	GTCTC	2 cut(s)	78, 358
BstMBI	GATC	3 cut(s)	38, 637, 799
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 64, 329, 428
BstSCI	CCNGG	2 cut(s)	239, 326
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	45, 418
BstV2I	GAAGAC	2 cut(s)	83, 773
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	289, 740
BsuTUI	ATCGAT	1 cut(s)	37
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	339, 392, 688, 727
BtsI	GCAGTG	2 cut(s)	532, 573
BtsIMutI	CAGTG	5 cut(s)	69, 81, 532, 573, 739
Cac8I	GCNNGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	4 cut(s)	287, 413, 443, 739
ClaI	ATCGAT	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	817, 913
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	2 cut(s)	251, 814
CviJI	RGCY	7 cut(s)	58, 289, 306, 431, 572, 740, 828
CviKI_1	RGCY	7 cut(s)	58, 289, 306, 431, 572, 740, 828
CviQI	GTAC	2 cut(s)	817, 913
DdeI	CTNAG	2 cut(s)	5, 84
DpnI	GATC	3 cut(s)	40, 639, 801
DpnII	GATC	3 cut(s)	38, 637, 799
DraIII	CACNNNGTG	1 cut(s)	736
Eco130I	CCWWGG	2 cut(s)	396, 692
Eco24I	GRGCYC	1 cut(s)	830
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	2 cut(s)	413, 443
Eco57I	CTGAAG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	396, 692
EcoT22I	ATGCAT	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	2 cut(s)	396, 692
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	2 cut(s)	254, 817
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	2 cut(s)	250, 813
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	59, 432
FokI	GGATG	4 cut(s)	326, 379, 675, 734
FriOI	GRGCYC	1 cut(s)	830
Fsp4HI	GCNGC	2 cut(s)	59, 432
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	2 cut(s)	59, 432
HaeIII	GGCC	2 cut(s)	289, 740
HapII	CCGG	2 cut(s)	240, 327
Hin1II	CATG	2 cut(s)	254, 817
HincII	GTYRAC	1 cut(s)	708
HindII	GTYRAC	1 cut(s)	708
HinfI	GANTC	5 cut(s)	188, 245, 336, 782, 875
HpaI	GTTAAC	1 cut(s)	708
HpaII	CCGG	2 cut(s)	240, 327
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	4 cut(s)	208, 223, 721, 787
Hpy188III	TCNNGA	3 cut(s)	7, 377, 641
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	2 cut(s)	125, 221
HpyCH4III	ACNGT	3 cut(s)	123, 655, 734
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	5 cut(s)	176, 392, 562, 578, 602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 64, 329, 428
HpyF3I	CTNAG	2 cut(s)	5, 84
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	2 cut(s)	254, 817
Ksp22I	TGATCA	1 cut(s)	799
KspAI	GTTAAC	1 cut(s)	708
Kzo9I	GATC	3 cut(s)	38, 637, 799
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	45, 418
LweI	GCATC	4 cut(s)	28, 106, 112, 401
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	478, 713
MalI	GATC	3 cut(s)	40, 639, 801
MboI	GATC	3 cut(s)	38, 637, 799
MboII	GAAGA	7 cut(s)	14, 83, 98, 778, 788, 791, 871
MhlI	GDGCHC	1 cut(s)	830
MluCI	AATT	2 cut(s)	217, 848
MnlI	CCTC	5 cut(s)	79, 278, 353, 394, 434
Mph1103I	ATGCAT	1 cut(s)	394
MseI	TTAA	4 cut(s)	387, 512, 707, 846
MslI	CAYNNNNRTG	1 cut(s)	812
MspI	CCGG	2 cut(s)	240, 327
MspR9I	CCNGG	2 cut(s)	241, 328
MwoI	GCNNNNNNNGC	4 cut(s)	25, 64, 329, 428
NciI	CCSGG	2 cut(s)	241, 328
NdeII	GATC	3 cut(s)	38, 637, 799
NlaIII	CATG	2 cut(s)	254, 817
NsiI	ATGCAT	1 cut(s)	394
PfeI	GAWTC	5 cut(s)	188, 245, 336, 782, 875
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	2 cut(s)	60, 433
PspPI	GGNCC	4 cut(s)	287, 413, 443, 739
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	818, 914
RsaNI	GTAC	2 cut(s)	817, 913
RseI	CAYNNNNRTG	1 cut(s)	812
SaqAI	TTAA	4 cut(s)	387, 512, 707, 846
SatI	GCNGC	2 cut(s)	59, 432
Sau3AI	GATC	3 cut(s)	38, 637, 799
Sau96I	GGNCC	4 cut(s)	287, 413, 443, 739
ScrFI	CCNGG	2 cut(s)	241, 328
SduI	GDGCHC	1 cut(s)	830
SetI	ASST	7 cut(s)	308, 405, 433, 445, 512, 698, 795
SfaNI	GCATC	4 cut(s)	28, 106, 112, 401
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	413, 443
SmiMI	CAYNNNNRTG	1 cut(s)	812
Sse9I	AATT	2 cut(s)	217, 848
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	2 cut(s)	239, 326
StyI	CCWWGG	2 cut(s)	396, 692
TaaI	ACNGT	3 cut(s)	123, 655, 734
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	217, 848
TatI	WGTACW	2 cut(s)	816, 912
TfiI	GAWTC	5 cut(s)	188, 245, 336, 782, 875
Tru1I	TTAA	4 cut(s)	387, 512, 707, 846
Tru9I	TTAA	4 cut(s)	387, 512, 707, 846
TscAI	CASTG	5 cut(s)	69, 88, 539, 580, 739
TseI	GCWGC	2 cut(s)	58, 431
TspDTI	ATGAA	5 cut(s)	240, 267, 616, 677, 779
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	5 cut(s)	69, 88, 539, 580, 739
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	413, 443
XapI	RAATTY	1 cut(s)	848
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.