Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005824

Physical Location & Seq

Genomic Coordinates Reverse (-)

2760397 .. 2764607

Gene Structure 4211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3087 bp

ATGTATTTCCGAGTTCTCTTGACGCCGTCCTCGGCCATGTTTGATTCTTTCTCCTTTGTACGTCGTTTGAGTTATTCCCCGGATTTGGGTCGTCGAATCTATGGACATGTTTTGCCCAGCCATGATCAGATACATCAACGTCTCCTAGAAATCTGTTTGGGGCAATGCAAATTATTCAAGAGTCGCAAAGTGTTCGACGAAATGCCTCAAAGACTTGCACTAGCCTTGAGAATTGGCAAAGCTGTCCATTCCAAAAGCTTGATACTTGGAATAGATTCAGAAGGTAGATTAGGTAACGCCATTGTGGATTTATATGCCAAGTGTGCACAAGTTTCTTATGCTGAGAAGCAATTCGACTTCCTTGAAAAAGATGTAACGGCGTGGAACTCAATGCTATCGATGTATTCCAGCATTGGGAAACCAGGAAAGGTCTTAAGGAGTTTTGTATCATTGTTTGAGAATCAGATTTTTCCAAATAAATTCACTTTTTCGATTGTTTTATCAACCTGTGCCAGGGAGACTAATGTAGAGTTTGGTAGACAAATTCATTGCAGTATGATTAAAATGGGGCTAGAACGCAACTCGTATTGTGGAGGGGCTTTAGTTGATATGTATGCCAAGTGTGACCGTATTAGTGATGCTCGACGAGTTTTTGAATGGATAGTGGATCCTAATACAGTTTGCTGGACGTGTTTGTTTTCTGGCTATGTGAAGGCTGGTTTGCCAGAGGAAGCTGTCTTAGTATTTGAAAGGATGCGGGATGAAGGCCATCGGCCTGATCATTTAGCTTTTGTGACTGTTATAAATACGTACATCAGGTTGGGGAAGCTAAAGGATGCACGTCTGTTGTTTGGGGAGATGTCAAGCCCAGATGTGGTAGCGTGGAATGTAATGATTTCAGGGCATGGGAAAAGAGGATGTGAGACTGTGGCTATTGAATATTTTTTCAATATGCGGAAATCTAGTGTTAAATCCACCCGTTCTACCTTAGGAAGCGTTTTGAGTGCTATTGGGATTGTAGCTAATCTTGATTTAGGTTTGGTAGTTCATGCAGAGGCTATTAAACTAGGTCTCGCTTCCAATATTTATGTCGGCAGTTCTTTGGTTAGCATGTACTCGAAATGTGAGAAAATGGAGGCTGCTGCAAAGGTATTTGAAGCTTTGGAGGAAAAAAATGACGTCTTCTGGAACGCGATGATAAGGGGTTATGCACATAATGGTGAATCCCACAAGGTTATGGAACTGTTTATGGATATGAAATCTTCTGGTTATAACATTGATGACTTTACCTTTACAAGCCTTTTAAGCACTTGTGCTGCATCACATGATCTAGAAATGGGAAGCCAGTTTCACTCAATCATCATCAAGAAGAAGTTAGCAAAAAACTTATTCGTAGGAAATGCATTAGTAGATATGTATGCAAAATGCGGAGCTCTTGAAGATGCAAGGCAAATTTTTGAGCGCATGTGTGATCGTGATAATGTAACTTGGAACACAATAATTGGGAGTTATGTCCAAGATGAGAATGAGAGTGAAGCTTTTGACTTGTTCAAGAGGATGAATTTGTGTGGTATAGTGTCTGATGGAGCATGTTTGGCTAGCACACTTAAGGCATGTACACATGTTCATGGTCTTTATCAAGGAAAACAAGTTCACTGCCTCTCTGTCAAATGTGGCCTAGACAGAGATCTTCATACTGGTAGCTCGCTCATTGACATGTATTCCAAGTGTGGAATCATCAAAGATGCACGTAAAGTTTTCTCTTCTCTGCCTGAGTGGAGCGTTGTGTCAATGAATGCTCTAATTGCAGGTTATTCTCAGAACAACTTAGAAGAAGCTGTAGTTCTCTTTCAAGAAATGCTGACCAGAGGTGTTAACCCATCTGAAATCACTTTTGCCACCATTGTTGAAGCTTGTCATAAACCAGAAAGTTTAACTCTAGGAACGCAATTTCATGGTCAGATAACAAAGAGGGGCTTCTCATCTGAAGGTGAATATCTAGGGATTTCCCTTTTGGGCATGTACATGAATTCACGTGGAATGACAGAGGCTTGTGCACTCTTCTCAGAGTTATCAAGCCCTAAGAGTATTGTTCTTTGGACGGGAATGATGTCAGGTCACAGTCAGAATGGATTTTATGAGGAGGCCTTGAAGTTTTACAAAGAAATGCGTCATGATGGTGTTCTACCTGACCAGGCAACATTTGTCACTGTTCTTCGAGTGTGTTCTGTCCTTTCCTCTTTAAGAGAAGGTAGAGCTATCCATTCTCTTATTTTTCACTTGGCCCATGACTTGGACGAGTTGACCTCTAACACCCTAATAGACATGTATGCTAAATGTGGGGACATGAAAGGTTCGTCACAAGTTTTCGATGAAATGAGGCGTAGAAGCAACGTTGTCTCATGGAACTCCTTGATCAATGGATATGCGAAAAATGGTTACGCTGAAGATGCCCTGAAAATCTTTGATTCTATGAGACAATCCCATATCATGCCAGATGAAATCACTTTCCTAGGTGTTCTTACAGCTTGTAGCCATGCAGGGAAAGTGTCAGATGGACGAAAGATTTTTGAGATGATGATTGGTCAATATGGTATTGAAGCGCGTGTAGATCATGTAGCTTGTATGGTTGATCTTCTTGGGAGATGGGGATATCTTCAAGAAGCTGATGACTTCATAGAAGCACAAAACCTGAAACCAGATGCAAGACTTTGGTCATCTCTTCTTGGTGCATGTAGGATTCATGGAGATGACATTAGGGGAGAAATTTCTGCCGAGAAGCTCATTGAATTAGAACCACAAAACTCGTCAGCTTATGTTCTTCTTTCGAACATATATGCCTCACAGGGATGTTGGGAAAAGGCCAATGCTTTGAGGAAAGTCATGAGAGACAGAGGAGTCAAGAAGGTACCTGGATATAGCTGGATTGATGTGGAACAGAGAACACACATTTTTGCTGCAGGAGACAAATCTCATTCTGAAATAGGAAAAATCGAGATGTTCCTCGAGGATCTTTATGATTTGATGAAAGATGATGCCGTTGTCAATCCTGATATCGTGGAACAAGGTTCTCTTGATTGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

1028

Amino Acids

115.01

Weight (kDa)

6.18

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	148 - 197	6.7e-07	PPR repeat family
PPR_2	PF13041	249 - 295	2.2e-09	PPR repeat family
PPR	PF01535	252 - 281	1.6e-07	PPR repeat
PPR_2	PF13041	417 - 464	1e-11	PPR repeat family
PPR	PF01535	419 - 448	1.7e-07	PPR repeat
PPR_2	PF13041	619 - 666	1.1e-09	PPR repeat family
PPR_2	PF13041	721 - 767	2e-09	PPR repeat family
PPR	PF01535	723 - 753	3.1e-07	PPR repeat
PPR_3	PF13812	822 - 869	1.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	823 - 870	5.1e-13	PPR repeat family
PPR_1	PF12854	823 - 851	2.7e-07	PPR repeat
PPR	PF01535	825 - 853	3.3e-09	PPR repeat
E_motif	PF20431	944 - 1002	5.8e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0005824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09040 AT3G09040 AT3G09040 AT3G09040
fragaria_vesca	FvH4_2g14640 FvH4_2g14640
malus_domestica	MD05G1015800.v1.1 MD10G1015600.v1.1
prunus_persica	Prupe.8G019100_v2.0.a1
pyrus_communis	pycom05g00870 pycom10g01020
rosa_chinensis	RchiOBHm_Chr6g0277121
rosa_laevigata	RLG00000013330
rosa_multiflora	Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049
rosa_roxburghii	Rroxscaffold_7G00191600
rosa_rugosa	Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500
rosa_samantha	Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700
rosa_wichuraiana	Rw6G018890 Rw6G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	803, 1272
AasI	GACNNNNNNGTC	1 cut(s)	2897
AatII	GACGTC	1 cut(s)	1182
AbsI	CCTCGAGG	1 cut(s)	3005
Acc36I	ACCTGC	1 cut(s)	1799
Acc65I	GGTACC	1 cut(s)	2908
AccB1I	GGYRCC	1 cut(s)	2908
AccB7I	CCANNNNNTGG	1 cut(s)	2293
AccI	GTMKAC	1 cut(s)	538
AccII	CGCG	2 cut(s)	1193, 2605
AciI	CCGC	3 cut(s)	757, 955, 1428
AclI	AACGTT	1 cut(s)	2394
AclWI	GGATC	3 cut(s)	662, 675, 3018
AcoI	YGGCCR	1 cut(s)	33
AcsI	RAATTY	6 cut(s)	479, 543, 1452, 1561, 2029, 2766
AcuI	CTGAAG	2 cut(s)	2007, 2466
AcvI	CACGTG	1 cut(s)	2036
AcyI	GRCGYC	2 cut(s)	23, 1179
AfaI	GTAC	6 cut(s)	60, 812, 1115, 1618, 2024, 2910
AfiI	CCNNNNNNNGG	6 cut(s)	85, 86, 414, 513, 874, 2293
AflII	CTTAAG	2 cut(s)	433, 1607
AflIII	ACRYGT	5 cut(s)	106, 689, 1621, 1716, 2325
AjiI	CACGTC	2 cut(s)	690, 842
AjnI	CCWGG	4 cut(s)	421, 512, 2193, 2911
AloI	GAACNNNNNNTCC	2 cut(s)	1635, 1667
Alw21I	GWGCWC	3 cut(s)	328, 1435, 2059
Alw26I	GTCTC	8 cut(s)	146, 512, 917, 1076, 2404, 2470, 2883, 2958
Alw44I	GTGCAC	2 cut(s)	324, 2055
AlwI	GGATC	3 cut(s)	662, 675, 3018
Ama87I	CYCGRG	1 cut(s)	3005
AoxI	GGCC	7 cut(s)	33, 766, 773, 1675, 2145, 2283, 2862
ApaLI	GTGCAC	2 cut(s)	324, 2055
ApeKI	GCWGC	4 cut(s)	1139, 1142, 1316, 2957
ApoI	RAATTY	6 cut(s)	479, 543, 1452, 1561, 2029, 2766
Asp700I	GAANNNNTTC	2 cut(s)	274, 350
Asp718I	GGTACC	1 cut(s)	2908
AspA2I	CCTAGG	1 cut(s)	2512
AspLEI	GCGC	2 cut(s)	1464, 2605
AspS9I	GGNCC	1 cut(s)	2284
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	1232, 2003
AsuII	TTCGAA	1 cut(s)	2828
AsuNHI	GCTAGC	1 cut(s)	1598
AvaI	CYCGRG	1 cut(s)	3005
AvrII	CCTAGG	1 cut(s)	2512
AxyI	CCTNAGG	1 cut(s)	988
BaeGI	GKGCMC	2 cut(s)	328, 2059
BamHI	GGATCC	1 cut(s)	667
BanI	GGYRCC	1 cut(s)	2908
BanII	GRGCYC	1 cut(s)	1435
BbrPI	CACGTG	1 cut(s)	2036
BbsI	GAAGAC	1 cut(s)	1174
Bbv12I	GWGCWC	3 cut(s)	328, 1435, 2059
BbvI	GCAGC	4 cut(s)	1126, 1129, 1303, 2944
BccI	CCATC	6 cut(s)	777, 1577, 1888, 2171, 2549, 2640
BceAI	ACGGC	3 cut(s)	10, 393, 3023
BcgI	CGANNNNNNTGC	2 cut(s)	175, 209
BciT130I	CCWGG	4 cut(s)	423, 514, 2195, 2913
BclI	TGATCA	3 cut(s)	124, 778, 2415
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	8 cut(s)	146, 512, 917, 1076, 2404, 2470, 2883, 2958
BfmI	CTRYAG	2 cut(s)	1839, 2958
BfrI	CTTAAG	2 cut(s)	433, 1607
BfuAI	ACCTGC	1 cut(s)	1799
BglII	AGATCT	1 cut(s)	1687
BisI	GCNGC	4 cut(s)	1140, 1143, 1317, 2958
BlnI	CCTAGG	1 cut(s)	2512
BlsI	GCNGC	4 cut(s)	1141, 1144, 1318, 2959
Bme1390I	CCNGG	5 cut(s)	80, 423, 514, 2195, 2913
BmeT110I	CYCGRG	1 cut(s)	3005
BmgBI	CACGTC	2 cut(s)	690, 842
BmgT120I	GGNCC	1 cut(s)	2284
BmiI	GGNNCC	2 cut(s)	669, 2910
BmrFI	CCNGG	5 cut(s)	80, 423, 514, 2195, 2913
BmsI	GCATC	9 cut(s)	628, 744, 826, 1328, 1432, 1735, 2440, 2692, 3025
BmtI	GCTAGC	1 cut(s)	1602
BoxI	GACNNNNGTC	1 cut(s)	2713
BpiI	GAAGAC	1 cut(s)	1174
BplI	GAGNNNNNCTC	2 cut(s)	2291, 2323
Bpu14I	TTCGAA	1 cut(s)	2828
BpuEI	CTTGAG	1 cut(s)	247
BpuMI	CCSGG	1 cut(s)	80
Bsa29I	ATCGAT	1 cut(s)	398
BsaAI	YACGTR	3 cut(s)	810, 1751, 2036
BsaHI	GRCGYC	2 cut(s)	23, 1179
BsaI	GGTCTC	1 cut(s)	1076
BsaJI	CCNNGG	4 cut(s)	30, 78, 513, 2512
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 86, 414, 513, 874, 2293
Bse1I	ACTGG	2 cut(s)	1345, 1702
Bse21I	CCTNAGG	1 cut(s)	988
Bse3DI	GCAATG	2 cut(s)	170, 547
BseBI	CCWGG	4 cut(s)	423, 514, 2195, 2913
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	4 cut(s)	30, 78, 513, 2512
BseGI	GGATG	6 cut(s)	759, 766, 841, 923, 1563, 2855
BseLI	CCNNNNNNNGG	6 cut(s)	85, 86, 414, 513, 874, 2293
BseMI	GCAATG	2 cut(s)	170, 547
BseMII	CTCAG	4 cut(s)	333, 1764, 1832, 2079
BseNI	ACTGG	2 cut(s)	1345, 1702
BseRI	GAGGAG	2 cut(s)	2156, 2910
BseSI	GKGCMC	2 cut(s)	328, 2059
BseXI	GCAGC	4 cut(s)	1126, 1129, 1303, 2944
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	2 cut(s)	1193, 2605
BshFI	GGCC	7 cut(s)	35, 768, 775, 1677, 2147, 2285, 2864
BshNI	GGYRCC	1 cut(s)	2908
BshVI	ATCGAT	1 cut(s)	398
BsiHKAI	GWGCWC	3 cut(s)	328, 1435, 2059
BsiHKCI	CYCGRG	1 cut(s)	3005
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	2357
BslI	CCNNNNNNNGG	6 cut(s)	85, 86, 414, 513, 874, 2293
BsmAI	GTCTC	8 cut(s)	146, 512, 917, 1076, 2404, 2470, 2883, 2958
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	2357
BsmI	GAATGC	1 cut(s)	1801
BsnI	GGCC	7 cut(s)	35, 768, 775, 1677, 2147, 2285, 2864
Bso31I	GGTCTC	1 cut(s)	1076
BsoBI	CYCGRG	1 cut(s)	3005
Bsp119I	TTCGAA	1 cut(s)	2828
Bsp1286I	GDGCHC	3 cut(s)	328, 1435, 2059
Bsp1407I	TGTACA	2 cut(s)	1616, 2022
BspACI	CCGC	3 cut(s)	757, 955, 1428
BspANI	GGCC	7 cut(s)	35, 768, 775, 1677, 2147, 2285, 2864
BspCNI	CTCAG	4 cut(s)	334, 1765, 1831, 2078
BspDI	ATCGAT	1 cut(s)	398
BspFNI	CGCG	2 cut(s)	1193, 2605
BspHI	TCATGA	2 cut(s)	2173, 2883
BspLI	GGNNCC	2 cut(s)	669, 2910
BspMAI	CTGCAG	1 cut(s)	2962
BspMI	ACCTGC	1 cut(s)	1799
BspOI	GCTAGC	1 cut(s)	1602
BspPI	GGATC	3 cut(s)	662, 675, 3018
BspT104I	TTCGAA	1 cut(s)	2828
BspT107I	GGYRCC	1 cut(s)	2908
BspTI	CTTAAG	2 cut(s)	433, 1607
BspTNI	GGTCTC	1 cut(s)	1076
BsrDI	GCAATG	2 cut(s)	170, 547
BsrGI	TGTACA	2 cut(s)	1616, 2022
BsrI	ACTGG	2 cut(s)	1345, 1702
BssECI	CCNNGG	4 cut(s)	30, 78, 513, 2512
BssNI	GRCGYC	2 cut(s)	23, 1179
BssT1I	CCWWGG	1 cut(s)	2512
Bst2UI	CCWGG	4 cut(s)	423, 514, 2195, 2913
Bst4CI	ACNGT	7 cut(s)	629, 679, 799, 928, 1245, 2123, 2212
Bst6I	CTCTTC	3 cut(s)	1768, 2066, 2727
BstACI	GRCGYC	2 cut(s)	23, 1179
BstAFI	CTTAAG	2 cut(s)	433, 1607
BstAUI	TGTACA	2 cut(s)	1616, 2022
BstBAI	YACGTR	3 cut(s)	810, 1751, 2036
BstBI	TTCGAA	1 cut(s)	2828
BstC8I	GCNNGC	2 cut(s)	1600, 1706
BstDEI	CTNAG	8 cut(s)	342, 739, 988, 1773, 1818, 1828, 2065, 2082
BstENI	CCTNNNNNAGG	1 cut(s)	511
BstF5I	GGATG	6 cut(s)	759, 766, 841, 923, 1563, 2855
BstFNI	CGCG	2 cut(s)	1193, 2605
BstHHI	GCGC	2 cut(s)	1464, 2605
BstMAI	GTCTC	8 cut(s)	146, 512, 917, 1076, 2404, 2470, 2883, 2958
BstMWI	GCNNNNNNNGC	5 cut(s)	323, 1305, 1595, 1805, 2450
BstNI	CCWGG	4 cut(s)	423, 514, 2195, 2913
BstPAI	GACNNNNGTC	1 cut(s)	2713
BstSCI	CCNGG	5 cut(s)	78, 421, 512, 2193, 2911
BstSFI	CTRYAG	2 cut(s)	1839, 2958
BstSLI	GKGCMC	2 cut(s)	328, 2059
BstSNI	TACGTA	1 cut(s)	810
BstUI	CGCG	2 cut(s)	1193, 2605
BstV1I	GCAGC	4 cut(s)	1126, 1129, 1303, 2944
BstV2I	GAAGAC	1 cut(s)	1174
BstX2I	RGATCY	3 cut(s)	667, 1687, 3010
BstYI	RGATCY	3 cut(s)	667, 1687, 3010
Bsu15I	ATCGAT	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	988
BsuRI	GGCC	7 cut(s)	35, 768, 775, 1677, 2147, 2285, 2864
BsuTUI	ATCGAT	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	1208
BtrI	CACGTC	2 cut(s)	690, 842
BtsCI	GGATG	6 cut(s)	759, 766, 841, 923, 1563, 2855
BtsI	GCAGTG	1 cut(s)	1654
BtsIMutI	CAGTG	2 cut(s)	1654, 2208
BveI	ACCTGC	1 cut(s)	1799
Cac8I	GCNNGC	2 cut(s)	1600, 1706
CciI	TCATGA	2 cut(s)	2173, 2883
CfoI	GCGC	2 cut(s)	1464, 2605
Cfr13I	GGNCC	1 cut(s)	2284
ClaI	ATCGAT	1 cut(s)	398
CseI	GACGC	2 cut(s)	31, 2159
Csp6I	GTAC	6 cut(s)	59, 811, 1114, 1617, 2023, 2909
CspCI	CAANNNNNGTGG	2 cut(s)	1888, 1923
CviQI	GTAC	6 cut(s)	59, 811, 1114, 1617, 2023, 2909
DdeI	CTNAG	8 cut(s)	342, 739, 988, 1773, 1818, 1828, 2065, 2082
DrdI	GACNNNNNNGTC	1 cut(s)	2897
DseDI	GACNNNNNNGTC	1 cut(s)	2897
EaeI	YGGCCR	1 cut(s)	33
Eam1104I	CTCTTC	3 cut(s)	1768, 2066, 2727
EarI	CTCTTC	3 cut(s)	1768, 2066, 2727
Ecl136II	GAGCTC	1 cut(s)	1433
Eco105I	TACGTA	1 cut(s)	810
Eco130I	CCWWGG	1 cut(s)	2512
Eco147I	AGGCCT	1 cut(s)	2147
Eco24I	GRGCYC	1 cut(s)	1435
Eco31I	GGTCTC	1 cut(s)	1076
Eco32I	GATATC	2 cut(s)	2654, 3055
Eco53kI	GAGCTC	1 cut(s)	1433
Eco57I	CTGAAG	2 cut(s)	2007, 2466
Eco72I	CACGTG	1 cut(s)	2036
Eco81I	CCTNAGG	1 cut(s)	988
Eco88I	CYCGRG	1 cut(s)	3005
EcoICRI	GAGCTC	1 cut(s)	1433
EcoNI	CCTNNNNNAGG	1 cut(s)	511
EcoRI	GAATTC	1 cut(s)	2029
EcoRII	CCWGG	4 cut(s)	421, 512, 2193, 2911
EcoRV	GATATC	2 cut(s)	2654, 3055
EcoT14I	CCWWGG	1 cut(s)	2512
EcoT22I	ATGCAT	1 cut(s)	1405
EcoT38I	GRGCYC	1 cut(s)	1435
ErhI	CCWWGG	1 cut(s)	2512
Esp3I	CGTCTC	1 cut(s)	146
FalI	AAGNNNNNCTT	3 cut(s)	1961, 1993, 3057
FaqI	GGGAC	1 cut(s)	2357
FauI	CCCGC	1 cut(s)	750
FbaI	TGATCA	3 cut(s)	124, 778, 2415
FblI	GTMKAC	1 cut(s)	538
Fnu4HI	GCNGC	4 cut(s)	1140, 1143, 1317, 2958
FokI	GGATG	6 cut(s)	766, 773, 848, 930, 1570, 2862
FriOI	GRGCYC	1 cut(s)	1435
Fsp4HI	GCNGC	4 cut(s)	1140, 1143, 1317, 2958
GlaI	GCGC	2 cut(s)	1463, 2604
GluI	GCNGC	4 cut(s)	1140, 1143, 1317, 2958
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	7 cut(s)	35, 768, 775, 1677, 2147, 2285, 2864
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	2 cut(s)	31, 2159
HhaI	GCGC	2 cut(s)	1464, 2605
Hin1I	GRCGYC	2 cut(s)	23, 1179
Hin6I	GCGC	2 cut(s)	1462, 2603
HinP1I	GCGC	2 cut(s)	1462, 2603
HincII	GTYRAC	2 cut(s)	1876, 2304
HindII	GTYRAC	2 cut(s)	1876, 2304
HindIII	AAGCTT	4 cut(s)	256, 1158, 1536, 1911
HpaI	GTTAAC	1 cut(s)	1876
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	1232, 2003
Hpy166II	GTNNAC	7 cut(s)	326, 539, 1619, 1654, 1876, 2057, 2304
Hpy8I	GTNNAC	7 cut(s)	326, 539, 1619, 1654, 1876, 2057, 2304
Hpy99I	CGWCG	4 cut(s)	66, 96, 200, 648
HpyAV	CCTTC	6 cut(s)	275, 706, 758, 1982, 2243, 2899
HpyCH4III	ACNGT	7 cut(s)	629, 679, 799, 928, 1245, 2123, 2212
HpyCH4IV	ACGT	9 cut(s)	61, 139, 689, 809, 841, 1179, 1750, 2035, 2394
HpyF10VI	GCNNNNNNNGC	5 cut(s)	323, 1305, 1595, 1805, 2450
HpyF3I	CTNAG	8 cut(s)	342, 739, 988, 1773, 1818, 1828, 2065, 2082
HpySE526I	ACGT	9 cut(s)	61, 139, 689, 809, 841, 1179, 1750, 2035, 2394
Hsp92I	GRCGYC	2 cut(s)	23, 1179
HspAI	GCGC	2 cut(s)	1462, 2603
KpnI	GGTACC	1 cut(s)	2912
Ksp22I	TGATCA	3 cut(s)	124, 778, 2415
KspAI	GTTAAC	1 cut(s)	1876
LmnI	GCTCC	3 cut(s)	1430, 1586, 1779
Lsp1109I	GCAGC	4 cut(s)	1126, 1129, 1303, 2944
LweI	GCATC	9 cut(s)	628, 744, 826, 1328, 1432, 1735, 2440, 2692, 3025
MaeII	ACGT	9 cut(s)	61, 139, 689, 809, 841, 1179, 1750, 2035, 2394
MaeIII	GTNAC	9 cut(s)	293, 373, 623, 793, 1483, 2117, 2206, 2358, 2438
MflI	RGATCY	3 cut(s)	667, 1687, 3010
MhlI	GDGCHC	3 cut(s)	328, 1435, 2059
MlyI	GAGTC	2 cut(s)	190, 2907
Mph1103I	ATGCAT	1 cut(s)	1405
MroXI	GAANNNNTTC	2 cut(s)	274, 350
MseI	TTAA	9 cut(s)	434, 561, 969, 1062, 1304, 1608, 1875, 1934, 2243
MslI	CAYNNNNRTG	7 cut(s)	1218, 1626, 1715, 2024, 2178, 2748, 2848
MspCI	CTTAAG	2 cut(s)	433, 1607
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	5 cut(s)	80, 423, 514, 2195, 2913
Mva1269I	GAATGC	1 cut(s)	1801
MvaI	CCWGG	4 cut(s)	423, 514, 2195, 2913
MvnI	CGCG	2 cut(s)	1193, 2605
MwoI	GCNNNNNNNGC	5 cut(s)	323, 1305, 1595, 1805, 2450
NciI	CCSGG	1 cut(s)	80
NheI	GCTAGC	1 cut(s)	1598
NlaIV	GGNNCC	2 cut(s)	669, 2910
NmeAIII	GCCGAG	2 cut(s)	11, 2800
NmuCI	GTSAC	5 cut(s)	623, 793, 2117, 2206, 2358
NsiI	ATGCAT	1 cut(s)	1405
NspV	TTCGAA	1 cut(s)	2828
PaeR7I	CTCGAG	1 cut(s)	3005
PagI	TCATGA	2 cut(s)	2173, 2883
PceI	AGGCCT	1 cut(s)	2147
PciI	ACATGT	4 cut(s)	106, 1621, 1716, 2325
PctI	GAATGC	1 cut(s)	1801
PdmI	GAANNNNTTC	2 cut(s)	274, 350
PfeI	GAWTC	8 cut(s)	44, 96, 275, 460, 1223, 1734, 2468, 2740
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	2293
PkrI	GCNGC	4 cut(s)	1141, 1144, 1318, 2959
PleI	GAGTC	2 cut(s)	189, 2906
PmaCI	CACGTG	1 cut(s)	2036
PmlI	CACGTG	1 cut(s)	2036
PpsI	GAGTC	2 cut(s)	189, 2906
Ppu21I	YACGTR	3 cut(s)	810, 1751, 2036
PscI	ACATGT	4 cut(s)	106, 1621, 1716, 2325
PshAI	GACNNNNGTC	1 cut(s)	2713
PsiI	TTATAA	2 cut(s)	803, 1272
Psp124BI	GAGCTC	1 cut(s)	1435
Psp1406I	AACGTT	1 cut(s)	2394
Psp6I	CCWGG	4 cut(s)	421, 512, 2193, 2911
PspCI	CACGTG	1 cut(s)	2036
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	4 cut(s)	421, 512, 2193, 2911
PspN4I	GGNNCC	2 cut(s)	669, 2910
PspPI	GGNCC	1 cut(s)	2284
PspXI	VCTCGAGB	1 cut(s)	3005
PstI	CTGCAG	1 cut(s)	2962
PsuI	RGATCY	3 cut(s)	667, 1687, 3010
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	6 cut(s)	60, 812, 1115, 1618, 2024, 2910
RsaNI	GTAC	6 cut(s)	59, 811, 1114, 1617, 2023, 2909
RseI	CAYNNNNRTG	7 cut(s)	1218, 1626, 1715, 2024, 2178, 2748, 2848
SacI	GAGCTC	1 cut(s)	1435
SaqAI	TTAA	9 cut(s)	434, 561, 969, 1062, 1304, 1608, 1875, 1934, 2243
SatI	GCNGC	4 cut(s)	1140, 1143, 1317, 2958
Sau96I	GGNCC	1 cut(s)	2284
SchI	GAGTC	2 cut(s)	190, 2907
ScrFI	CCNGG	5 cut(s)	80, 423, 514, 2195, 2913
SduI	GDGCHC	3 cut(s)	328, 1435, 2059
SfaNI	GCATC	9 cut(s)	628, 744, 826, 1328, 1432, 1735, 2440, 2692, 3025
SfcI	CTRYAG	2 cut(s)	1839, 2958
Sfr274I	CTCGAG	1 cut(s)	3005
SfuI	TTCGAA	1 cut(s)	2828
SlaI	CTCGAG	1 cut(s)	3005
SmiMI	CAYNNNNRTG	7 cut(s)	1218, 1626, 1715, 2024, 2178, 2748, 2848
SmlI	CTYRAG	4 cut(s)	226, 433, 1607, 3005
SmoI	CTYRAG	4 cut(s)	226, 433, 1607, 3005
SnaBI	TACGTA	1 cut(s)	810
SseBI	AGGCCT	1 cut(s)	2147
SsiI	CCGC	3 cut(s)	757, 955, 1428
SspI	AATATT	2 cut(s)	941, 1084
SstI	GAGCTC	1 cut(s)	1435
StuI	AGGCCT	1 cut(s)	2147
StyD4I	CCNGG	5 cut(s)	78, 421, 512, 2193, 2911
StyI	CCWWGG	1 cut(s)	2512
TaaI	ACNGT	7 cut(s)	629, 679, 799, 928, 1245, 2123, 2212
TaiI	ACGT	9 cut(s)	64, 142, 692, 812, 844, 1182, 1753, 2038, 2397
TatI	WGTACW	3 cut(s)	1113, 1616, 2022
TfiI	GAWTC	8 cut(s)	44, 96, 275, 460, 1223, 1734, 2468, 2740
Tru1I	TTAA	9 cut(s)	434, 561, 969, 1062, 1304, 1608, 1875, 1934, 2243
Tru9I	TTAA	9 cut(s)	434, 561, 969, 1062, 1304, 1608, 1875, 1934, 2243
TscAI	CASTG	2 cut(s)	1661, 2215
TseFI	GTSAC	5 cut(s)	623, 793, 2117, 2206, 2358
TseI	GCWGC	4 cut(s)	1139, 1142, 1316, 2957
Tsp45I	GTSAC	5 cut(s)	623, 793, 2117, 2206, 2358
TspRI	CASTG	2 cut(s)	1661, 2215
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	2293
Vha464I	CTTAAG	2 cut(s)	433, 1607
VneI	GTGCAC	2 cut(s)	324, 2055
XagI	CCTNNNNNAGG	1 cut(s)	511
XapI	RAATTY	6 cut(s)	479, 543, 1452, 1561, 2029, 2766
XbaI	TCTAGA	1 cut(s)	1330
XhoI	CTCGAG	1 cut(s)	3005
XmaJI	CCTAGG	1 cut(s)	2512
XmiI	GTMKAC	1 cut(s)	538
XmnI	GAANNNNTTC	2 cut(s)	274, 350
ZraI	GACGTC	1 cut(s)	1180
Zsp2I	ATGCAT	1 cut(s)	1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.