Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005824

Physical Location & Seq

Genomic Coordinates Reverse (-)

29951783 .. 29955044

Gene Structure 3262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013330

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3174 bp

ATGCGCCTCAGGCTTCCCTACAAAACTTTACACTCCTTCAGCCAAAACTGCAGACTTTCATCCGAATCAATTCTCCCATATGGAACCACAGAGCCACTTCACACCCATCTCTTCCGAATTTGTCGAGAACAATGCAGGCTTATCAAGACCCACAAAGTGTTCGGTGAAATGTCTGAAAGACAGCTGGCTCAATCTTCAAGAACCTGCAAGGCTATCCATGCCCAGGGCTTGAAATTTGAAGTTGGGTCGAAAGGGTTGCTAGGAAATGCTATTGTGGGTTTTTATGCCAAGTGTGGTAACCTGGGCTATGCTGAGAAGGCATTTAATTGCCTTAATAACAAGGATGTGTTTGCTTGGAACTCTGTCTTGTCGATGTATTCAAATAAGGGATTGCTCGAGCAGGTTTTTAACTCATTTGAGACAATGTGGAAATGCAAGGTTTTGCCGAATGAGTTCACGTTTGCAATGGTCTTGTCTGCTTGTACAAGAGTGGGGAATATAGAGTATGGTAGACAAGTTCATTGCAGTGTTATTAAGATGGGGCTTGAGTTGATATCATTCTGTCAAGGTGCACTTATTGATATGTATGCCAAGTGCAATTGTATAAGTGATGCTCGGCAGATATTTGACAGTGCAGTGGAGTTGGATACCGTCGCTTGGACAACAATGATTTCAGGGTATGTTCAAGTTGGGCTGCTTGAGGAAGCACTTAAAGTGTTTAAGGAGATGCAGAGAGTTGGTGGTGTTCTGGACCAAGTGGCCTATGTGACTGTTATAAATGCATGTGTTGGTCTAGGAAGGCTAGATGATGCATGTGACTTGTTCTCGCAGATGCCCAATCCAAATGATGTGGCATGGAATGTGATGATTTCTGGGCATGCAAAGAGAGGTTATGAGGTAGAAGCTGTTAACTTTTTCCTGCAAATGAGGAAAGGTGGTGTAAAACCGACAAGATCTACTCTGGGAAGTCTTTTAAGTGCAATCTCAAGTTTAGCAGCTCTAGACTATGGGCTGATGGTTCATGCTATGGCAATAAAGCAGGGGTTAGACTCTAATGTTTACGTAGGAAGTTCTTTAATCAATATGTATGCCAAGTGTGAAAAAATTGATGCTGCTGAGAGAATATTTCATTATATATCAGAGAAAAATCTTGTCTTGTGGAACGCAATGCTTGGGGGTTATGCACAGAATGGGTATGCCAATGAAGTCATAAAATTGTTTACTAATATGAAGGCATGTGGTGTTCACCCTGATCAGTTTACCTACACCAGCATTCTTAGTGCCTGTTCTTGCTTGCAAAATCTAGAAATGGGTCGCAAATTGCATTCAGTCATCATCAAGAACCAATTTGCATCAAATTTATTCGTCGGAAATGCATTGGTTGATATGTACGCTAAATCAGGGGATCTGAAGGAAGCAAGGAACCAATTCGAGCTCATAAGCAATCGAGACAATGTATCTTGGAATGCAATTATTGTTGGATATGTGCAGGAAGAGGACGAGGACAAGGCCTTTCGTATGTTCAGAAGAATGATATTGCATAGGATTGTGCCTGATGAAGTATCCTTGGCCAGTATACTAAATGCTTGCGCAAATGTTCAAGCACTGGACATGGGACAGCAAGTCCACTGTCTTTCGATTAAAATTGGTCTAGAAACAAGCCTTTATGCTGGGAGCTCCCTTATTGACATGTATTCCAAATGTGGGCTGATTAGGGATGCACAAAGTGTTCTTGATTTCTTGCCCCATTGCAGTGTGGTCTCAATGAATGCTCTGATTTCTGGCTTTGTTCATAGAAACCTCGAAGAAGCAGTAAACATATTTCGTGAGATGCAGGATATTGGATTGAACCCATCTGAAGTTACTTTTTCAAGTCTTTTAGATGCATGCAATGGACCTATTATGCTACCACTGGGAAGACAAATCCATAACATAGTACTAAAGAAAGGCCTTTTGTTTGATGGTGACTTCTTAGGTGTCTCACTTTTGGGAATGTATATGAACTGCCAAAGCAAAATAGATGCAACCAATATTTTCTTAGAGTTCCCAAAGCCAAAAAGCAAAGTATTATGGACCGCTATGATTTCGGGACTCAGTCAAAATGATTGTATAGAGGAGGCATTGCAGTTGTATCAAGAAATGCGTAGTGATAATGCCCTACCAGACCAAGCAACTTTTGCCAGTGTTCTTCGAGCATGTGCTGTTATATCTTCTTTACAAAATGGTAGAGAGATCCATTCTCTCATTTTTCATACCGGTTTTAATTTGGATGAGTTAACATGTAGTGCCCTGGTAGACATGTATGCCAAATGTGGGGATGTGAGAAGCTCTGTGCAAGTTTTCCAAGAAATGGGTACTAAGAATGGTGTTATTTCTTGGAACTCAATGATCGTTGGTTTTGCTAAAAATGGGTATGCAGAAGATGCATTGAAGATCTTTGATGAGATGAAGCAATCTCATGTTGAGCCTGACGATGTCACATTTCTTGGTGTTCTCACTGCATGTAGTCATGCAGGGAAGGTAGCTGAAGGTCGTGAGATCTTTGATTCTATGGTCAATTATTATTCTATTCAACCCAGGGTTGATCATATTTGCTGCATGCTTGATCTTCTGGGCAGATGGGGTTTGCTTAAAGAAGCAGAGGAGTTTATTGATAGGCTAGATTTTGTACCAAATTCTATGATTTGGGCCACACTGCTTGGTGCTTGCAAATTACATGGAGATGACATAAGGGGTCGGTGTGCGGCTGAGAAACTCAAGGAGTTAGAACCGCAAAGTTCGTCCCCATATGTGCTACTTTCTAGTATGTGTGCTGAATCTGGAAACTGGAATGAGGCTAACTCTTTGAGGAGGGAAATGAAAGAAAAGGGGGTGATTAAGTTGCCTGGATTTAGTTGGATTTCTGTGGGACAAAGGACAAATTACTTTGTTGCTGGGGACAAGTCTCATCCAAGTGCTGCTGAAATTCATGTCGCTTTAAAGTACTTGACAGCAATAATGAAAGGAGAGGGCTATGTTTTTGATGAAACAGATTCTTTGTTGCATGAAGAAGATATTCTGCAACGATGCTTTGCAGTTGCAAATCTAATCTCTCTCCCTCGCTCAAATATATTTCGGAGTTCCCCTGATAAGGGATTCTCAGCTGAGGATCTGATAATTGGGCAGCCTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

1058

Amino Acids

117.44

Weight (kDa)

5.97

Isoelectric Point (pI)

41.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 162	1.2e-08	PPR repeat family
PPR_1	PF12854	213 - 244	4e-06	PPR repeat
PPR_2	PF13041	216 - 263	3.4e-11	PPR repeat family
PPR	PF01535	218 - 247	1.8e-09	PPR repeat
PPR_2	PF13041	281 - 327	2.6e-08	PPR repeat family
PPR_2	PF13041	383 - 430	7.6e-13	PPR repeat family
PPR_2	PF13041	484 - 532	4.9e-08	PPR repeat family
PPR_2	PF13041	585 - 630	1.4e-09	PPR repeat family
PPR_3	PF13812	585 - 630	9.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	689 - 734	1.7e-09	PPR repeat family
PPR	PF01535	689 - 717	5.5e-07	PPR repeat
PPR_long	PF17177	699 - 846	1.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	789 - 836	2.4e-12	PPR repeat family
PPR	PF01535	791 - 819	1.6e-08	PPR repeat
E_motif	PF20431	910 - 967	1.3e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09040 AT3G09040 AT3G09040 AT3G09040
fragaria_vesca	FvH4_2g14640 FvH4_2g14640
malus_domestica	MD05G1015800.v1.1 MD10G1015600.v1.1
prunus_persica	Prupe.8G019100_v2.0.a1
pyrus_communis	pycom05g00870 pycom10g01020
rosa_chinensis	RchiOBHm_Chr6g0277121
rosa_laevigata	RLG00000013330
rosa_multiflora	Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049
rosa_roxburghii	Rroxscaffold_7G00191600
rosa_rugosa	Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500
rosa_samantha	Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700
rosa_wichuraiana	Rw6G018890 Rw6G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
Acc16I	TGCGCA	1 cut(s)	1591
Acc36I	ACCTGC	2 cut(s)	212, 391
AccB7I	CCANNNNNTGG	1 cut(s)	2350
AccI	GTMKAC	3 cut(s)	511, 1576, 2295
AciI	CCGC	3 cut(s)	2076, 2744, 2771
AclWI	GGATC	3 cut(s)	1413, 2227, 3156
AcoI	YGGCCR	1 cut(s)	1569
AcsI	RAATTY	5 cut(s)	117, 233, 1357, 2674, 2964
AcuI	CTGAAG	4 cut(s)	22, 1430, 1878, 2547
AdeI	CACNNNGTG	2 cut(s)	157, 1727
AfaI	GTAC	6 cut(s)	484, 1391, 1938, 2356, 2670, 2984
AfiI	CCNNNNNNNGG	7 cut(s)	223, 657, 1704, 2313, 2350, 3130, 3131
AflIII	ACRYGT	3 cut(s)	1689, 2279, 2298
AgeI	ACCGGT	1 cut(s)	2255
AhdI	GACNNNNNGTC	1 cut(s)	1622
AjnI	CCWGG	6 cut(s)	222, 300, 2289, 2576, 2884, 3166
AluBI	AGCT	8 cut(s)	184, 905, 998, 1435, 1677, 2328, 2525, 3143
AluI	AGCT	8 cut(s)	184, 905, 998, 1435, 1677, 2328, 2525, 3143
Alw21I	GWGCWC	3 cut(s)	574, 1437, 1679
Alw26I	GTCTC	5 cut(s)	413, 1443, 1765, 1984, 2949
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	3 cut(s)	1413, 2227, 3156
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	5 cut(s)	759, 1509, 1569, 1948, 2688
ApaLI	GTGCAC	1 cut(s)	570
ApeKI	GCWGC	6 cut(s)	694, 995, 1112, 2595, 2957, 3163
ApoI	RAATTY	5 cut(s)	117, 233, 1357, 2674, 2964
AsiGI	ACCGGT	1 cut(s)	2255
Asp700I	GAANNNNTTC	4 cut(s)	69, 452, 1427, 3054
AspLEI	GCGC	2 cut(s)	6, 1592
AspS9I	GGNCC	4 cut(s)	751, 1895, 2073, 2688
AsuHPI	GGTGA	4 cut(s)	176, 1238, 1976, 2884
AvaI	CYCGRG	1 cut(s)	395
AvaII	GGWCC	3 cut(s)	751, 1895, 2073
AxyI	CCTNAGG	1 cut(s)	8
BaeGI	GKGCMC	2 cut(s)	574, 2290
BalI	TGGCCA	1 cut(s)	1571
BanII	GRGCYC	2 cut(s)	1437, 1679
BbsI	GAAGAC	1 cut(s)	1924
Bbv12I	GWGCWC	3 cut(s)	574, 1437, 1679
BbvCI	CCTCAGC	1 cut(s)	3144
BbvI	GCAGC	5 cut(s)	681, 1007, 1099, 2582, 2944
BccI	CCATC	6 cut(s)	114, 532, 1009, 1861, 1955, 2613
BcgI	CGANNNNNNTGC	4 cut(s)	114, 148, 238, 272
BciT130I	CCWGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
BciVI	GTATCC	2 cut(s)	640, 1573
BclI	TGATCA	2 cut(s)	1252, 2584
BcoDI	GTCTC	5 cut(s)	413, 1443, 1765, 1984, 2949
BfaI	CTAG	8 cut(s)	260, 794, 803, 1001, 1304, 1652, 2660, 2802
BfmI	CTRYAG	1 cut(s)	49
BfuAI	ACCTGC	2 cut(s)	212, 391
BfuI	GTATCC	2 cut(s)	640, 1573
BglII	AGATCT	3 cut(s)	953, 2433, 2538
BisI	GCNGC	7 cut(s)	695, 996, 1113, 2596, 2745, 2958, 3164
BlsI	GCNGC	7 cut(s)	696, 997, 1114, 2597, 2746, 2959, 3165
BmcAI	AGTACT	2 cut(s)	1938, 2984
Bme1390I	CCNGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
Bme18I	GGWCC	3 cut(s)	751, 1895, 2073
BmeRI	GACNNNNNGTC	1 cut(s)	1622
BmeT110I	CYCGRG	1 cut(s)	395
BmgT120I	GGNCC	4 cut(s)	751, 1895, 2073, 2688
BmiI	GGNNCC	2 cut(s)	85, 1424
BmrFI	CCNGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
BmrI	ACTGGG	1 cut(s)	1922
BmuI	ACTGGG	1 cut(s)	1922
BpiI	GAAGAC	1 cut(s)	1924
BplI	GAGNNNNNCTC	2 cut(s)	2825, 2857
Bpu10I	CCTNAGC	1 cut(s)	3144
BpuEI	CTTGAG	4 cut(s)	566, 719, 970, 2741
BsaAI	YACGTR	1 cut(s)	1063
BsaI	GGTCTC	1 cut(s)	1765
BsaJI	CCNNGG	7 cut(s)	222, 223, 301, 1566, 2289, 2576, 2577
BsaWI	WCCGGW	1 cut(s)	2255
Bsc4I	CCNNNNNNNGG	7 cut(s)	223, 657, 1704, 2313, 2350, 3130, 3131
Bse118I	RCCGGY	1 cut(s)	2255
Bse1I	ACTGG	5 cut(s)	1572, 1611, 1917, 2181, 2831
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	6 cut(s)	471, 520, 1173, 1747, 1897, 2120
BseBI	CCWGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
BseDI	CCNNGG	7 cut(s)	222, 223, 301, 1566, 2289, 2576, 2577
BseGI	GGATG	6 cut(s)	59, 349, 1723, 2275, 2323, 2947
BseLI	CCNNNNNNNGG	7 cut(s)	223, 657, 1704, 2313, 2350, 3130, 3131
BseMI	GCAATG	6 cut(s)	471, 520, 1173, 1747, 1897, 2120
BseMII	CTCAG	7 cut(s)	22, 303, 1107, 2107, 2739, 3135, 3153
BseNI	ACTGG	5 cut(s)	1572, 1611, 1917, 2181, 2831
BseRI	GAGGAG	3 cut(s)	2129, 2657, 2863
BseSI	GKGCMC	2 cut(s)	574, 2290
BseXI	GCAGC	5 cut(s)	681, 1007, 1099, 2582, 2944
BseYI	CCCAGC	2 cut(s)	1670, 2933
BsgI	GTGCAG	2 cut(s)	654, 1508
BshFI	GGCC	5 cut(s)	761, 1511, 1571, 1950, 2690
BshTI	ACCGGT	1 cut(s)	2255
BsiHKAI	GWGCWC	3 cut(s)	574, 1437, 1679
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	2256
BslFI	GGGAC	5 cut(s)	1629, 2103, 2767, 2922, 2951
BslI	CCNNNNNNNGG	7 cut(s)	223, 657, 1704, 2313, 2350, 3130, 3131
BsmAI	GTCTC	5 cut(s)	413, 1443, 1765, 1984, 2949
BsmFI	GGGAC	5 cut(s)	1629, 2103, 2767, 2922, 2951
BsmI	GAATGC	4 cut(s)	1272, 1324, 1471, 1774
BsnI	GGCC	5 cut(s)	761, 1511, 1571, 1950, 2690
Bso31I	GGTCTC	1 cut(s)	1765
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	4 cut(s)	574, 1437, 1679, 2290
Bsp1407I	TGTACA	1 cut(s)	482
BspACI	CCGC	3 cut(s)	2076, 2744, 2771
BspANI	GGCC	5 cut(s)	761, 1511, 1571, 1950, 2690
BspCNI	CTCAG	7 cut(s)	21, 304, 1108, 2106, 2740, 3136, 3152
BspLI	GGNNCC	2 cut(s)	85, 1424
BspMAI	CTGCAG	1 cut(s)	53
BspMI	ACCTGC	2 cut(s)	212, 391
BspPI	GGATC	3 cut(s)	1413, 2227, 3156
BspTNI	GGTCTC	1 cut(s)	1765
BsrDI	GCAATG	6 cut(s)	471, 520, 1173, 1747, 1897, 2120
BsrFI	RCCGGY	1 cut(s)	2255
BsrGI	TGTACA	1 cut(s)	482
BsrI	ACTGG	5 cut(s)	1572, 1611, 1917, 2181, 2831
BssAI	RCCGGY	1 cut(s)	2255
BssECI	CCNNGG	7 cut(s)	222, 223, 301, 1566, 2289, 2576, 2577
BssNAI	GTATAC	1 cut(s)	1577
BssT1I	CCWWGG	1 cut(s)	1566
Bst1107I	GTATAC	1 cut(s)	1577
Bst2UI	CCWGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
Bst4CI	ACNGT	4 cut(s)	632, 652, 772, 1631
Bst6I	CTCTTC	2 cut(s)	116, 1488
BstAPI	GCANNNNNTGC	2 cut(s)	2177, 2423
BstAUI	TGTACA	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	1063
BstC8I	GCNNGC	8 cut(s)	137, 186, 879, 1295, 1588, 1888, 2600, 2707
BstEII	GGTNACC	1 cut(s)	296
BstF5I	GGATG	6 cut(s)	59, 349, 1723, 2275, 2323, 2947
BstHHI	GCGC	2 cut(s)	6, 1592
BstMAI	GTCTC	5 cut(s)	413, 1443, 1765, 1984, 2949
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 48, 218, 317, 2177, 2423
BstNI	CCWGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	6 cut(s)	222, 300, 2289, 2576, 2884, 3166
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	2 cut(s)	574, 2290
BstSNI	TACGTA	1 cut(s)	1063
BstV1I	GCAGC	5 cut(s)	681, 1007, 1099, 2582, 2944
BstV2I	GAAGAC	1 cut(s)	1924
BstX2I	RGATCY	6 cut(s)	953, 1405, 2232, 2433, 2538, 3148
BstYI	RGATCY	6 cut(s)	953, 1405, 2232, 2433, 2538, 3148
BstZ17I	GTATAC	1 cut(s)	1577
Bsu36I	CCTNAGG	1 cut(s)	8
BsuI	GTATCC	2 cut(s)	640, 1573
BsuRI	GGCC	5 cut(s)	761, 1511, 1571, 1950, 2690
BtsCI	GGATG	6 cut(s)	59, 349, 1723, 2275, 2323, 2947
BtsI	GCAGTG	5 cut(s)	532, 642, 1759, 2496, 2693
BveI	ACCTGC	2 cut(s)	212, 391
Cac8I	GCNNGC	8 cut(s)	137, 186, 879, 1295, 1588, 1888, 2600, 2707
CfoI	GCGC	2 cut(s)	6, 1592
Cfr10I	RCCGGY	1 cut(s)	2255
Cfr13I	GGNCC	4 cut(s)	751, 1895, 2073, 2688
Csp6I	GTAC	6 cut(s)	483, 1390, 1937, 2355, 2669, 2983
CspAI	ACCGGT	1 cut(s)	2255
CspCI	CAANNNNNGTGG	4 cut(s)	831, 866, 2680, 2715
CviQI	GTAC	6 cut(s)	483, 1390, 1937, 2355, 2669, 2983
DraI	TTTAAA	1 cut(s)	2979
DraIII	CACNNNGTG	2 cut(s)	157, 1727
DriI	GACNNNNNGTC	1 cut(s)	1622
EaeI	YGGCCR	1 cut(s)	1569
Eam1104I	CTCTTC	2 cut(s)	116, 1488
Eam1105I	GACNNNNNGTC	1 cut(s)	1622
EarI	CTCTTC	2 cut(s)	116, 1488
Ecl136II	GAGCTC	2 cut(s)	1435, 1677
Eco105I	TACGTA	1 cut(s)	1063
Eco130I	CCWWGG	1 cut(s)	1566
Eco147I	AGGCCT	2 cut(s)	1511, 1950
Eco24I	GRGCYC	2 cut(s)	1437, 1679
Eco31I	GGTCTC	1 cut(s)	1765
Eco32I	GATATC	1 cut(s)	555
Eco47I	GGWCC	3 cut(s)	751, 1895, 2073
Eco53kI	GAGCTC	2 cut(s)	1435, 1677
Eco57I	CTGAAG	4 cut(s)	22, 1430, 1878, 2547
Eco81I	CCTNAGG	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	296
EcoICRI	GAGCTC	2 cut(s)	1435, 1677
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	6 cut(s)	222, 300, 2289, 2576, 2884, 3166
EcoRV	GATATC	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	1566
EcoT22I	ATGCAT	5 cut(s)	784, 814, 1378, 1888, 2428
EcoT38I	GRGCYC	2 cut(s)	1437, 1679
ErhI	CCWWGG	1 cut(s)	1566
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	5 cut(s)	1629, 2103, 2767, 2922, 2951
FauNDI	CATATG	2 cut(s)	79, 2788
FbaI	TGATCA	2 cut(s)	1252, 2584
FblI	GTMKAC	3 cut(s)	511, 1576, 2295
Fnu4HI	GCNGC	7 cut(s)	695, 996, 1113, 2596, 2745, 2958, 3164
FokI	GGATG	6 cut(s)	46, 356, 1730, 2282, 2330, 2934
FriOI	GRGCYC	2 cut(s)	1437, 1679
Fsp4HI	GCNGC	7 cut(s)	695, 996, 1113, 2596, 2745, 2958, 3164
FspBI	CTAG	8 cut(s)	260, 794, 803, 1001, 1304, 1652, 2660, 2802
FspI	TGCGCA	1 cut(s)	1591
GlaI	GCGC	2 cut(s)	5, 1591
GluI	GCNGC	7 cut(s)	695, 996, 1113, 2596, 2745, 2958, 3164
GsaI	CCCAGC	2 cut(s)	1674, 2937
HaeIII	GGCC	5 cut(s)	761, 1511, 1571, 1950, 2690
HapII	CCGG	1 cut(s)	2256
HhaI	GCGC	2 cut(s)	6, 1592
Hin6I	GCGC	2 cut(s)	4, 1590
HinP1I	GCGC	2 cut(s)	4, 1590
HincII	GTYRAC	2 cut(s)	910, 2277
HindII	GTYRAC	2 cut(s)	910, 2277
HinfI	GANTC	7 cut(s)	65, 1049, 2091, 2546, 2816, 3032, 3135
HpaI	GTTAAC	2 cut(s)	910, 2277
HpaII	CCGG	1 cut(s)	2256
HphI	GGTGA	4 cut(s)	176, 1238, 1976, 2884
Hpy99I	CGWCG	2 cut(s)	656, 1370
HpyAV	CCTTC	7 cut(s)	46, 310, 792, 1225, 1405, 2512, 2522
HpyCH4III	ACNGT	4 cut(s)	632, 652, 772, 1631
HpyCH4IV	ACGT	2 cut(s)	458, 1062
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 48, 218, 317, 2177, 2423
HpySE526I	ACGT	2 cut(s)	458, 1062
HspAI	GCGC	2 cut(s)	4, 1590
Ksp22I	TGATCA	2 cut(s)	1252, 2584
KspAI	GTTAAC	2 cut(s)	910, 2277
LmnI	GCTCC	2 cut(s)	1674, 1682
Lsp1109I	GCAGC	5 cut(s)	681, 1007, 1099, 2582, 2944
MaeI	CTAG	8 cut(s)	260, 794, 803, 1001, 1304, 1652, 2660, 2802
MaeII	ACGT	2 cut(s)	458, 1062
MaeIII	GTNAC	6 cut(s)	296, 766, 815, 1861, 1964, 2476
MfeI	CAATTG	1 cut(s)	598
MflI	RGATCY	6 cut(s)	953, 1405, 2232, 2433, 2538, 3148
MhlI	GDGCHC	4 cut(s)	574, 1437, 1679, 2290
MlsI	TGGCCA	1 cut(s)	1571
MluNI	TGGCCA	1 cut(s)	1571
MlyI	GAGTC	2 cut(s)	1043, 2085
MmeI	TCCRAC	4 cut(s)	624, 1348, 1459, 2876
Mox20I	TGGCCA	1 cut(s)	1571
Mph1103I	ATGCAT	5 cut(s)	784, 814, 1378, 1888, 2428
MroXI	GAANNNNTTC	4 cut(s)	69, 452, 1427, 3054
MscI	TGGCCA	1 cut(s)	1571
MslI	CAYNNNNRTG	4 cut(s)	525, 1752, 2721, 2952
Msp20I	TGGCCA	1 cut(s)	1571
MspA1I	CMGCKG	2 cut(s)	184, 3143
MspI	CCGG	1 cut(s)	2256
MspR9I	CCNGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
MunI	CAATTG	1 cut(s)	598
Mva1269I	GAATGC	4 cut(s)	1272, 1324, 1471, 1774
MvaI	CCWGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
MwoI	GCNNNNNNNGC	6 cut(s)	10, 48, 218, 317, 2177, 2423
NdeI	CATATG	2 cut(s)	79, 2788
NlaIV	GGNNCC	2 cut(s)	85, 1424
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	4 cut(s)	766, 815, 1964, 2476
NsbI	TGCGCA	1 cut(s)	1591
NsiI	ATGCAT	5 cut(s)	784, 814, 1378, 1888, 2428
PaeI	GCATGC	3 cut(s)	881, 1890, 2602
PaeR7I	CTCGAG	1 cut(s)	395
PasI	CCCWGGG	2 cut(s)	223, 2577
PceI	AGGCCT	2 cut(s)	1511, 1950
PciI	ACATGT	3 cut(s)	1689, 2279, 2298
PctI	GAATGC	4 cut(s)	1272, 1324, 1471, 1774
PdmI	GAANNNNTTC	4 cut(s)	69, 452, 1427, 3054
PfeI	GAWTC	5 cut(s)	65, 2546, 2816, 3032, 3135
PflFI	GACNNNGTC	2 cut(s)	2094, 2474
PflMI	CCANNNNNTGG	1 cut(s)	2350
PinAI	ACCGGT	1 cut(s)	2255
PkrI	GCNGC	7 cut(s)	696, 997, 1114, 2597, 2746, 2959, 3165
PleI	GAGTC	2 cut(s)	1043, 2085
PpsI	GAGTC	2 cut(s)	1043, 2085
Ppu21I	YACGTR	1 cut(s)	1063
PscI	ACATGT	3 cut(s)	1689, 2279, 2298
PsiI	TTATAA	1 cut(s)	776
Psp124BI	GAGCTC	2 cut(s)	1437, 1679
Psp6I	CCWGG	6 cut(s)	222, 300, 2289, 2576, 2884, 3166
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	2 cut(s)	1670, 2933
PspGI	CCWGG	6 cut(s)	222, 300, 2289, 2576, 2884, 3166
PspN4I	GGNNCC	2 cut(s)	85, 1424
PspPI	GGNCC	4 cut(s)	751, 1895, 2073, 2688
PspXI	VCTCGAGB	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	53
PsuI	RGATCY	6 cut(s)	953, 1405, 2232, 2433, 2538, 3148
PsyI	GACNNNGTC	2 cut(s)	2094, 2474
PvuII	CAGCTG	2 cut(s)	184, 3143
RsaI	GTAC	6 cut(s)	484, 1391, 1938, 2356, 2670, 2984
RsaNI	GTAC	6 cut(s)	483, 1390, 1937, 2355, 2669, 2983
RseI	CAYNNNNRTG	4 cut(s)	525, 1752, 2721, 2952
SacI	GAGCTC	2 cut(s)	1437, 1679
SatI	GCNGC	7 cut(s)	695, 996, 1113, 2596, 2745, 2958, 3164
Sau96I	GGNCC	4 cut(s)	751, 1895, 2073, 2688
ScaI	AGTACT	2 cut(s)	1938, 2984
SchI	GAGTC	2 cut(s)	1043, 2085
ScrFI	CCNGG	6 cut(s)	224, 302, 2291, 2578, 2886, 3168
SduI	GDGCHC	4 cut(s)	574, 1437, 1679, 2290
SfcI	CTRYAG	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	395
SinI	GGWCC	3 cut(s)	751, 1895, 2073
SlaI	CTCGAG	1 cut(s)	395
SmiMI	CAYNNNNRTG	4 cut(s)	525, 1752, 2721, 2952
SmlI	CTYRAG	5 cut(s)	395, 545, 698, 985, 2756
SmoI	CTYRAG	5 cut(s)	395, 545, 698, 985, 2756
SnaBI	TACGTA	1 cut(s)	1063
SphI	GCATGC	3 cut(s)	881, 1890, 2602
SseBI	AGGCCT	2 cut(s)	1511, 1950
SsiI	CCGC	3 cut(s)	2076, 2744, 2771
SspI	AATATT	2 cut(s)	1125, 2032
SspMI	CTAG	8 cut(s)	260, 794, 803, 1001, 1304, 1652, 2660, 2802
SstI	GAGCTC	2 cut(s)	1437, 1679
StuI	AGGCCT	2 cut(s)	1511, 1950
StyD4I	CCNGG	6 cut(s)	222, 300, 2289, 2576, 2884, 3166
StyI	CCWWGG	1 cut(s)	1566
TaaI	ACNGT	4 cut(s)	632, 652, 772, 1631
TaiI	ACGT	2 cut(s)	461, 1065
TaqI	TCGA	9 cut(s)	124, 248, 371, 396, 1431, 1447, 1637, 1803, 2191
TatI	WGTACW	3 cut(s)	482, 1936, 2982
TauI	GCSGC	1 cut(s)	2747
TfiI	GAWTC	5 cut(s)	65, 2546, 2816, 3032, 3135
TseFI	GTSAC	4 cut(s)	766, 815, 1964, 2476
TseI	GCWGC	6 cut(s)	694, 995, 1112, 2595, 2957, 3163
Tsp45I	GTSAC	4 cut(s)	766, 815, 1964, 2476
Tth111I	GACNNNGTC	2 cut(s)	2094, 2474
Van91I	CCANNNNNTGG	1 cut(s)	2350
VneI	GTGCAC	1 cut(s)	570
VpaK11BI	GGWCC	3 cut(s)	751, 1895, 2073
XapI	RAATTY	5 cut(s)	117, 233, 1357, 2674, 2964
XbaI	TCTAGA	3 cut(s)	1000, 1303, 1651
XhoI	CTCGAG	1 cut(s)	395
XmiI	GTMKAC	3 cut(s)	511, 1576, 2295
XmnI	GAANNNNTTC	4 cut(s)	69, 452, 1427, 3054
XspI	CTAG	8 cut(s)	260, 794, 803, 1001, 1304, 1652, 2660, 2802
ZrmI	AGTACT	2 cut(s)	1938, 2984
Zsp2I	ATGCAT	5 cut(s)	784, 814, 1378, 1888, 2428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.