Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0005824

Physical Location & Seq

Genomic Coordinates Reverse (-)

191599 .. 192516

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgcgtagtgataatgccctaccagaccaagcaacttttgccagtgttcttcgagcatgttctgttatatcttctttacaaaatggtagagagatccattctctcatttttcatactggttttaatttggatgagttaacatgtagtgccctggtagacatgtatgctaaatgtggggatgtgagaagctctgtgcaagttttccaagaaatgggtactaagaatggtgttatttcttggaactcaatgatcattggttttgctaaaaatgggtatgcagaagatgcatttaagatctttgatgagatgaagcaatctcatgttgagcctgacgacgtcacatttcttggtgttctcactgcatgtagtcatgcagggaaggtagctgaaggtcgtgagatctttgattctatggtcaattattattctattcaacccagggttgatcatatttgctgcatgcttgatcttctgggcagatgggacgacataaggggtcggcgtgcggctgagaaactgaaggagttagaaccacaaagttcgtccccatatgtgctactttctagtatgtgtgctgaatctggaaactggaatgaggctaactctttgaggagggaaatgaaagaaaaaggggtgattaagttgcctggatttagttggatttctgtgggacagaggacaaattactttgttgttggggacaagtctcatccaagtgctgctgaaattcatgtcgctttaaagtacttgacagcaataatgaaaggagaggcctgtgtttttggtgaaacagattctttgttgcatgaagaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

272

Amino Acids

30.25

Weight (kDa)

5.33

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09040 AT3G09040 AT3G09040 AT3G09040
fragaria_vesca	FvH4_2g14640 FvH4_2g14640
malus_domestica	MD05G1015800.v1.1 MD10G1015600.v1.1
prunus_persica	Prupe.8G019100_v2.0.a1
pyrus_communis	pycom05g00870 pycom10g01020
rosa_chinensis	RchiOBHm_Chr6g0277121
rosa_laevigata	RLG00000013330
rosa_multiflora	Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049
rosa_roxburghii	Rroxscaffold_7G00191600
rosa_rugosa	Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500
rosa_samantha	Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700
rosa_wichuraiana	Rw6G018890 Rw6G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	339
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	1 cut(s)	506
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	726
AcuI	CTGAAG	2 cut(s)	408, 539
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	2 cut(s)	217, 746
AfiI	CCNNNNNNNGG	1 cut(s)	211
AflIII	ACRYGT	2 cut(s)	140, 159
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	3 cut(s)	150, 437, 646
AluBI	AGCT	2 cut(s)	189, 386
AluI	AGCT	2 cut(s)	189, 386
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	456, 719
ApoI	RAATTY	1 cut(s)	726
AsuHPI	GGTGA	2 cut(s)	646, 797
BaeGI	GKGCMC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	443, 706
BccI	CCATC	1 cut(s)	474
BciT130I	CCWGG	3 cut(s)	152, 439, 648
BclI	TGATCA	2 cut(s)	249, 445
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	1 cut(s)	564
BglII	AGATCT	2 cut(s)	294, 399
BisI	GCNGC	3 cut(s)	457, 507, 720
BlsI	GCNGC	3 cut(s)	458, 508, 721
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	3 cut(s)	152, 439, 648
BmrFI	CCNGG	3 cut(s)	152, 439, 648
BmsI	GCATC	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	150, 437, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	3 cut(s)	42, 121, 593
BseBI	CCWGG	3 cut(s)	152, 439, 648
BseDI	CCNNGG	3 cut(s)	150, 437, 438
BseGI	GGATG	3 cut(s)	136, 184, 709
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	42, 121, 593
BseRI	GAGGAG	1 cut(s)	625
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	443, 706
BshFI	GGCC	1 cut(s)	773
BslFI	GGGAC	4 cut(s)	497, 529, 684, 713
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	4 cut(s)	497, 529, 684, 713
BsnI	GGCC	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
BspACI	CCGC	1 cut(s)	506
BspANI	GGCC	1 cut(s)	773
BspCNI	CTCAG	1 cut(s)	502
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	3 cut(s)	42, 121, 593
BssECI	CCNNGG	3 cut(s)	150, 437, 438
BssMI	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
BssNI	GRCGYC	1 cut(s)	336
Bst2UI	CCWGG	3 cut(s)	152, 439, 648
Bst6I	CTCTTC	1 cut(s)	807
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	2 cut(s)	38, 284
BstC8I	GCNNGC	2 cut(s)	461, 504
BstDEI	CTNAG	2 cut(s)	219, 510
BstF5I	GGATG	3 cut(s)	136, 184, 709
BstKTI	GATC	6 cut(s)	96, 252, 297, 402, 448, 469
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 284
BstNI	CCWGG	3 cut(s)	152, 439, 648
BstNSI	RCATGY	5 cut(s)	60, 144, 163, 366, 463
BstSCI	CCNGG	3 cut(s)	150, 437, 646
BstSLI	GKGCMC	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	443, 706
BstX2I	RGATCY	3 cut(s)	93, 294, 399
BstYI	RGATCY	3 cut(s)	93, 294, 399
BsuRI	GGCC	1 cut(s)	773
BtsCI	GGATG	3 cut(s)	136, 184, 709
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	49, 357
Cac8I	GCNNGC	2 cut(s)	461, 504
Csp6I	GTAC	2 cut(s)	216, 745
CviAII	CATG	9 cut(s)	57, 141, 160, 320, 363, 371, 460, 731, 806
CviJI	RGCY	6 cut(s)	189, 328, 386, 509, 599, 773
CviKI_1	RGCY	6 cut(s)	189, 328, 386, 509, 599, 773
CviQI	GTAC	2 cut(s)	216, 745
DdeI	CTNAG	2 cut(s)	219, 510
DpnI	GATC	6 cut(s)	95, 251, 296, 401, 447, 468
DpnII	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	1 cut(s)	807
EarI	CTCTTC	1 cut(s)	807
Eco147I	AGGCCT	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	408, 539
EcoRII	CCWGG	3 cut(s)	150, 437, 646
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	9 cut(s)	60, 144, 163, 323, 366, 374, 463, 734, 809
FaqI	GGGAC	4 cut(s)	497, 529, 684, 713
FatI	CATG	9 cut(s)	56, 140, 159, 319, 362, 370, 459, 730, 805
FauNDI	CATATG	1 cut(s)	550
FbaI	TGATCA	2 cut(s)	249, 445
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	457, 507, 720
FokI	GGATG	3 cut(s)	143, 191, 696
Fsp4HI	GCNGC	3 cut(s)	457, 507, 720
FspBI	CTAG	1 cut(s)	564
GluI	GCNGC	3 cut(s)	457, 507, 720
HaeIII	GGCC	1 cut(s)	773
Hin1I	GRCGYC	1 cut(s)	336
Hin1II	CATG	9 cut(s)	60, 144, 163, 323, 366, 374, 463, 734, 809
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	407, 578, 794
HpaI	GTTAAC	1 cut(s)	138
HphI	GGTGA	2 cut(s)	646, 797
Hpy166II	GTNNAC	2 cut(s)	138, 157
Hpy188III	TCNNGA	2 cut(s)	395, 582
Hpy8I	GTNNAC	2 cut(s)	138, 157
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	3 cut(s)	373, 383, 514
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	7 cut(s)	196, 278, 287, 362, 374, 459, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 284
HpyF3I	CTNAG	2 cut(s)	219, 510
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	1 cut(s)	336
Hsp92II	CATG	9 cut(s)	60, 144, 163, 323, 366, 374, 463, 734, 809
Ksp22I	TGATCA	2 cut(s)	249, 445
KspAI	GTTAAC	1 cut(s)	138
Kzo9I	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
Lsp1109I	GCAGC	2 cut(s)	443, 706
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	564
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	6 cut(s)	95, 251, 296, 401, 447, 468
MboI	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
MboII	GAAGA	4 cut(s)	41, 63, 293, 461
MflI	RGATCY	3 cut(s)	93, 294, 399
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	4 cut(s)	124, 418, 682, 726
MmeI	TCCRAC	1 cut(s)	638
MnlI	CCTC	5 cut(s)	589, 603, 606, 669, 763
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	5 cut(s)	123, 137, 291, 639, 740
MslI	CAYNNNNRTG	1 cut(s)	714
MspR9I	CCNGG	3 cut(s)	152, 439, 648
MvaI	CCWGG	3 cut(s)	152, 439, 648
MwoI	GCNNNNNNNGC	2 cut(s)	38, 284
NdeI	CATATG	1 cut(s)	550
NdeII	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
NlaIII	CATG	9 cut(s)	60, 144, 163, 323, 366, 374, 463, 734, 809
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	289
NspI	RCATGY	5 cut(s)	60, 144, 163, 366, 463
PaeI	GCATGC	1 cut(s)	463
PasI	CCCWGGG	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	773
PciI	ACATGT	2 cut(s)	140, 159
PfeI	GAWTC	3 cut(s)	407, 578, 794
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	458, 508, 721
PscI	ACATGT	2 cut(s)	140, 159
Psp6I	CCWGG	3 cut(s)	150, 437, 646
PspGI	CCWGG	3 cut(s)	150, 437, 646
PsuI	RGATCY	3 cut(s)	93, 294, 399
PsyI	GACNNNGTC	1 cut(s)	335
RsaI	GTAC	2 cut(s)	217, 746
RsaNI	GTAC	2 cut(s)	216, 745
RseI	CAYNNNNRTG	1 cut(s)	714
SaqAI	TTAA	5 cut(s)	123, 137, 291, 639, 740
SatI	GCNGC	3 cut(s)	457, 507, 720
Sau3AI	GATC	6 cut(s)	93, 249, 294, 399, 445, 466
ScaI	AGTACT	1 cut(s)	746
ScrFI	CCNGG	3 cut(s)	152, 439, 648
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	191, 339, 384, 388, 394
SfaNI	GCATC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	714
SphI	GCATGC	1 cut(s)	463
Sse9I	AATT	4 cut(s)	124, 418, 682, 726
SseBI	AGGCCT	1 cut(s)	773
SsiI	CCGC	1 cut(s)	506
SspMI	CTAG	1 cut(s)	564
StuI	AGGCCT	1 cut(s)	773
StyD4I	CCNGG	3 cut(s)	150, 437, 646
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	52
TasI	AATT	4 cut(s)	124, 418, 682, 726
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	509
TfiI	GAWTC	3 cut(s)	407, 578, 794
Tru1I	TTAA	5 cut(s)	123, 137, 291, 639, 740
Tru9I	TTAA	5 cut(s)	123, 137, 291, 639, 740
TscAI	CASTG	2 cut(s)	49, 364
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	456, 719
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	5 cut(s)	101, 323, 635, 719, 776
TspRI	CASTG	2 cut(s)	49, 364
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	726
XceI	RCATGY	5 cut(s)	60, 144, 163, 366, 463
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	564
ZraI	GACGTC	1 cut(s)	337
ZrmI	AGTACT	1 cut(s)	746
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.