Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005824

Physical Location & Seq

Genomic Coordinates Forward (+)

37720500 .. 37722206

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAATGCTCTGATTTCTGGCTTTGTTCATAGAAACTTCGAAGAAGCAGTAAACATATTTCGTGAGATGCAGGATATTGGATTGAACCCATTTGAAGTTACTTTTTCAAGTCTTTTAGATGCATGCAATGGACCTATTATGCTACCACTGGGAAGACAAATCCACAACATAGTACTAAAGAAAGGCCTTTTGTTTGATGGTGACTTCTTAGGTGTCTCTCTTTTGGGAATGTATATGAATTGCCAAAGCAAAATAGATGCAACCAGTCTTTTCTTAGAATTCCCAAAGCCAAAAAGCAAAGTATTATGGACCTCTATGATTTCAGGACTCAGTCAAAATGATTGTATAGAGGAGGCATTGCAGTTGTATCGAGAAATGCGTAGTGATAATGCCCTACCAGACCAAGCAACTTTTGCCAGTGTTCTTCGAGCATGTTCTGTTATATCTTCTTTACAAAATGGTAGAGAGATCCATTCTCTCATTTTTCATACTGGTTTTAATTTGGATGAGTTAACATGTAGTGCCCTGGTAGACATGTATGCTAAATGTGGGGATGTGAGAAGCTCTGTGCAAGTTTTCCAAGAAATGGGTACTAAGAATGGTGTTATTTCTTGGAACTCAATGATCATTGGTTTTGCTAAAAATGGGTATGCAGAAGATGCATTTAAGATCTTTGATGAGATGAAGCAATCTCATGTTGAGCCTGACGACGTCACATTTCTTGGTGTTCTCACTGCATGTAGTCATGCAGGGAAGGTGGCTGAAGGTCGGAATCCAGCCAACATATTTGGAATTTGGAAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

268

Amino Acids

29.71

Weight (kDa)

5.25

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 42	3.4e-06	PPR repeat family
PPR_2	PF13041	100 - 145	6.8e-10	PPR repeat family
PPR	PF01535	101 - 129	5e-08	PPR repeat
PPR_long	PF17177	111 - 252	3.9e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	201 - 248	3e-13	PPR repeat family
PPR_3	PF13812	201 - 247	5.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	202 - 229	4.8e-06	PPR repeat
PPR	PF01535	203 - 231	2.3e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09040 AT3G09040 AT3G09040 AT3G09040
fragaria_vesca	FvH4_2g14640 FvH4_2g14640
malus_domestica	MD05G1015800.v1.1 MD10G1015600.v1.1
prunus_persica	Prupe.8G019100_v2.0.a1
pyrus_communis	pycom05g00870 pycom10g01020
rosa_chinensis	RchiOBHm_Chr6g0277121
rosa_laevigata	RLG00000013330
rosa_multiflora	Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049
rosa_roxburghii	Rroxscaffold_7G00191600
rosa_rugosa	Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500
rosa_samantha	Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700
rosa_wichuraiana	Rw6G018890 Rw6G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	714
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccI	GTMKAC	1 cut(s)	531
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	278, 792
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	1 cut(s)	711
AfaI	GTAC	2 cut(s)	174, 592
AfiI	CCNNNNNNNGG	1 cut(s)	586
AflIII	ACRYGT	2 cut(s)	515, 534
AgsI	TTSAA	3 cut(s)	85, 95, 108
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	1 cut(s)	564
AluI	AGCT	1 cut(s)	564
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	463
AoxI	GGCC	1 cut(s)	184
ApoI	RAATTY	2 cut(s)	278, 792
AspS9I	GGNCC	2 cut(s)	131, 309
AsuHPI	GGTGA	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	131, 309
BaeGI	GKGCMC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	160
BccI	CCATC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BciT130I	CCWGG	1 cut(s)	527
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	220
BglII	AGATCT	1 cut(s)	669
BmcAI	AGTACT	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	527
Bme18I	GGWCC	2 cut(s)	131, 309
BmgT120I	GGNCC	2 cut(s)	131, 309
BmrFI	CCNGG	1 cut(s)	527
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	57, 109, 247, 649
BmuI	ACTGGG	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	711
BsaJI	CCNNGG	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	4 cut(s)	153, 264, 417, 496
Bse3DI	GCAATG	2 cut(s)	133, 356
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	511, 559
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	133, 356
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	4 cut(s)	153, 264, 417, 496
BseRI	GAGGAG	1 cut(s)	365
BseSI	GKGCMC	1 cut(s)	526
BshFI	GGCC	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	3 cut(s)	468, 624, 669
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	342
BspPI	GGATC	1 cut(s)	463
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	133, 356
BsrI	ACTGG	4 cut(s)	153, 264, 417, 496
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	3 cut(s)	468, 624, 669
BssNI	GRCGYC	1 cut(s)	711
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	1 cut(s)	804
BstACI	GRCGYC	1 cut(s)	711
BstAPI	GCANNNNNTGC	2 cut(s)	413, 659
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	4 cut(s)	208, 274, 329, 594
BstF5I	GGATG	2 cut(s)	511, 559
BstKTI	GATC	3 cut(s)	471, 627, 672
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	468, 624, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 659
BstNI	CCWGG	1 cut(s)	527
BstNSI	RCATGY	5 cut(s)	126, 435, 519, 538, 741
BstSCI	CCNGG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	160
BstX2I	RGATCY	2 cut(s)	468, 669
BstYI	RGATCY	2 cut(s)	468, 669
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	511, 559
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	3 cut(s)	146, 424, 732
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	131, 309
Csp6I	GTAC	2 cut(s)	173, 591
CviAII	CATG	7 cut(s)	123, 432, 516, 535, 695, 738, 746
CviJI	RGCY	7 cut(s)	21, 186, 289, 564, 703, 761, 779
CviKI_1	RGCY	7 cut(s)	21, 186, 289, 564, 703, 761, 779
CviQI	GTAC	2 cut(s)	173, 591
DdeI	CTNAG	4 cut(s)	208, 274, 329, 594
DpnI	GATC	3 cut(s)	470, 626, 671
DpnII	GATC	3 cut(s)	468, 624, 669
Eco147I	AGGCCT	1 cut(s)	186
Eco47I	GGWCC	2 cut(s)	131, 309
Eco57I	CTGAAG	1 cut(s)	783
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	525
EcoT22I	ATGCAT	2 cut(s)	124, 664
FaeI	CATG	7 cut(s)	126, 435, 519, 538, 698, 741, 749
FatI	CATG	7 cut(s)	122, 431, 515, 534, 694, 737, 745
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	531
FokI	GGATG	2 cut(s)	518, 566
HaeIII	GGCC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	711
Hin1II	CATG	7 cut(s)	126, 435, 519, 538, 698, 741, 749
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HinfI	GANTC	2 cut(s)	327, 772
HpaI	GTTAAC	1 cut(s)	513
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	3 cut(s)	52, 513, 532
Hpy188I	TCNGA	2 cut(s)	12, 771
Hpy188III	TCNNGA	3 cut(s)	62, 324, 371
Hpy8I	GTNNAC	3 cut(s)	52, 513, 532
Hpy99I	CGWCG	1 cut(s)	713
HpyAV	CCTTC	2 cut(s)	748, 758
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 659
HpyF3I	CTNAG	4 cut(s)	208, 274, 329, 594
HpySE526I	ACGT	1 cut(s)	711
Hsp92I	GRCGYC	1 cut(s)	711
Hsp92II	CATG	7 cut(s)	126, 435, 519, 538, 698, 741, 749
Ksp22I	TGATCA	1 cut(s)	624
KspAI	GTTAAC	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	468, 624, 669
LweI	GCATC	4 cut(s)	57, 109, 247, 649
MaeII	ACGT	1 cut(s)	711
MaeIII	GTNAC	3 cut(s)	97, 200, 712
MalI	GATC	3 cut(s)	470, 626, 671
MboI	GATC	3 cut(s)	468, 624, 669
MboII	GAAGA	5 cut(s)	53, 165, 416, 438, 668
MflI	RGATCY	2 cut(s)	468, 669
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	4 cut(s)	238, 278, 499, 792
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	749
MnlI	CCTC	3 cut(s)	322, 343, 346
Mph1103I	ATGCAT	2 cut(s)	124, 664
MseI	TTAA	3 cut(s)	498, 512, 666
MspR9I	CCNGG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	413, 659
NdeII	GATC	3 cut(s)	468, 624, 669
NlaIII	CATG	7 cut(s)	126, 435, 519, 538, 698, 741, 749
NmuCI	GTSAC	2 cut(s)	200, 712
NsiI	ATGCAT	2 cut(s)	124, 664
NspI	RCATGY	5 cut(s)	126, 435, 519, 538, 741
NspV	TTCGAA	1 cut(s)	39
PaeI	GCATGC	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	186
PciI	ACATGT	2 cut(s)	515, 534
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	772
PflFI	GACNNNGTC	2 cut(s)	330, 710
PflMI	CCANNNNNTGG	1 cut(s)	586
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PscI	ACATGT	2 cut(s)	515, 534
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspPI	GGNCC	2 cut(s)	131, 309
PsuI	RGATCY	2 cut(s)	468, 669
PsyI	GACNNNGTC	2 cut(s)	330, 710
RsaI	GTAC	2 cut(s)	174, 592
RsaNI	GTAC	2 cut(s)	173, 591
SaqAI	TTAA	3 cut(s)	498, 512, 666
Sau3AI	GATC	3 cut(s)	468, 624, 669
Sau96I	GGNCC	2 cut(s)	131, 309
ScaI	AGTACT	1 cut(s)	174
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	1 cut(s)	527
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	7 cut(s)	136, 214, 314, 566, 714, 759, 769
SfaNI	GCATC	4 cut(s)	57, 109, 247, 649
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	131, 309
SphI	GCATGC	1 cut(s)	126
Sse9I	AATT	4 cut(s)	238, 278, 499, 792
SseBI	AGGCCT	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	714
TaqI	TCGA	3 cut(s)	39, 370, 427
TasI	AATT	4 cut(s)	238, 278, 499, 792
TatI	WGTACW	1 cut(s)	172
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	3 cut(s)	498, 512, 666
Tru9I	TTAA	3 cut(s)	498, 512, 666
TscAI	CASTG	3 cut(s)	153, 424, 739
TseFI	GTSAC	2 cut(s)	200, 712
Tsp45I	GTSAC	2 cut(s)	200, 712
TspDTI	ATGAA	5 cut(s)	17, 17, 251, 476, 698
TspRI	CASTG	3 cut(s)	153, 424, 739
Tth111I	GACNNNGTC	2 cut(s)	330, 710
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	131, 309
XapI	RAATTY	2 cut(s)	278, 792
XceI	RCATGY	5 cut(s)	126, 435, 519, 538, 741
XmiI	GTMKAC	1 cut(s)	531
ZraI	GACGTC	1 cut(s)	712
ZrmI	AGTACT	1 cut(s)	174
Zsp2I	ATGCAT	2 cut(s)	124, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.