Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005824

Physical Location & Seq

Genomic Coordinates Reverse (-)

2074919 .. 2075215

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1015600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTATTCCAAATGTGGGGTCATTGAGGATACACGTAAAGCTTTCTACTATATGCCCCACTGGAGTGTAGTCTCCGTGAATGCTCTAATTGCTGGTTTTGGTTATAGCAACTTGGAAGAAGCAGTAAATTTGCTTCATGAGATGCAGGACATAGGATTGAATCCAACTGAAATTACGTTTTCAATCCTTTTAGATGCATGTAGTGGGTCTGTGATGTTAACACTGGGAAGGCAAATCCACAGCATAGTACTCAAGAAGGGGCTTTTGTGTGATGGCGACTTTAATGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

99

Amino Acids

10.9

Weight (kDa)

4.72

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 68	8.2e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09040 AT3G09040 AT3G09040 AT3G09040
fragaria_vesca	FvH4_2g14640 FvH4_2g14640
malus_domestica	MD05G1015800.v1.1 MD10G1015600.v1.1
prunus_persica	Prupe.8G019100_v2.0.a1
pyrus_communis	pycom05g00870 pycom10g01020
rosa_chinensis	RchiOBHm_Chr6g0277121
rosa_laevigata	RLG00000013330
rosa_multiflora	Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049
rosa_roxburghii	Rroxscaffold_7G00191600
rosa_rugosa	Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500
rosa_samantha	Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700
rosa_wichuraiana	Rw6G018890 Rw6G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	127
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	160, 183
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	76
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	1 cut(s)	35
BarI	GAAGNNNNNNTAC	2 cut(s)	117, 149
BccI	CCATC	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	76
BfuI	GTATCC	1 cut(s)	22
BmcAI	AGTACT	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	132, 184
BmuI	ACTGGG	1 cut(s)	233
BpmI	CTGGAG	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	65, 228
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	65, 228
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	65, 228
BstBAI	YACGTR	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	58, 221
CciI	TCATGA	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	2 cut(s)	137, 198
CviJI	RGCY	2 cut(s)	41, 262
CviKI_1	RGCY	2 cut(s)	41, 262
CviQI	GTAC	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	2 cut(s)	140, 201
FaiI	YATR	7 cut(s)	51, 53, 105, 138, 152, 199, 245
FatI	CATG	2 cut(s)	136, 197
GsuI	CTGGAG	1 cut(s)	82
Hin1II	CATG	2 cut(s)	140, 201
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	1 cut(s)	160
HpaI	GTTAAC	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	137, 253
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	222, 250
HpyCH4IV	ACGT	2 cut(s)	34, 176
HpyCH4V	TGCA	2 cut(s)	145, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpySE526I	ACGT	2 cut(s)	34, 176
Hsp92II	CATG	2 cut(s)	140, 201
KspAI	GTTAAC	1 cut(s)	219
LpnPI	CCDG	4 cut(s)	46, 78, 131, 209
LweI	GCATC	2 cut(s)	132, 184
MaeII	ACGT	2 cut(s)	34, 176
MboII	GAAGA	1 cut(s)	128
MluCI	AATT	3 cut(s)	87, 127, 171
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	2 cut(s)	218, 282
MslI	CAYNNNNRTG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	140, 201
NsiI	ATGCAT	1 cut(s)	199
NspI	RCATGY	1 cut(s)	201
OliI	CACNNNNGTG	1 cut(s)	63
PagI	TCATGA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	35
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	218, 282
ScaI	AGTACT	1 cut(s)	249
SetI	ASST	3 cut(s)	37, 43, 179
SfaNI	GCATC	2 cut(s)	132, 184
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	3 cut(s)	87, 127, 171
TaiI	ACGT	2 cut(s)	37, 179
TasI	AATT	3 cut(s)	87, 127, 171
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	2 cut(s)	218, 282
Tru9I	TTAA	2 cut(s)	218, 282
TscAI	CASTG	2 cut(s)	65, 228
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	2 cut(s)	65, 228
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.