Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09040 AT3G09040 AT3G09040 AT3G09040 |
| fragaria_vesca | FvH4_2g14640 FvH4_2g14640 |
| malus_domestica | MD05G1015800.v1.1 MD10G1015600.v1.1 |
| prunus_persica | Prupe.8G019100_v2.0.a1 |
| pyrus_communis | pycom05g00870 pycom10g01020 |
| rosa_chinensis | RchiOBHm_Chr6g0277121 |
| rosa_laevigata | RLG00000013330 |
| rosa_multiflora | Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049 |
| rosa_roxburghii | Rroxscaffold_7G00191600 |
| rosa_rugosa | Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500 |
| rosa_samantha | Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700 |
| rosa_wichuraiana | Rw6G018890 Rw6G018920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1092 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 964 |
| AccI | GTMKAC | 2 cut(s) | 190, 909 |
| AciI | CCGC | 1 cut(s) | 1358 |
| AclWI | GGATC | 2 cut(s) | 27, 841 |
| AcsI | RAATTY | 3 cut(s) | 656, 1288, 1578 |
| AcuI | CTGAAG | 4 cut(s) | 44, 492, 1161, 1391 |
| AcyI | GRCGYC | 1 cut(s) | 1089 |
| AdeI | CACNNNGTG | 1 cut(s) | 341 |
| AfaI | GTAC | 5 cut(s) | 5, 552, 970, 1284, 1598 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 318, 964 |
| AflIII | ACRYGT | 2 cut(s) | 893, 912 |
| AgsI | TTSAA | 4 cut(s) | 215, 463, 486, 1187 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 236 |
| AjnI | CCWGG | 3 cut(s) | 903, 1190, 1498 |
| AluBI | AGCT | 3 cut(s) | 49, 291, 942 |
| AluI | AGCT | 3 cut(s) | 49, 291, 942 |
| Alw21I | GWGCWC | 2 cut(s) | 51, 293 |
| Alw26I | GTCTC | 4 cut(s) | 251, 379, 598, 1563 |
| AlwI | GGATC | 2 cut(s) | 27, 841 |
| AoxI | GGCC | 2 cut(s) | 562, 1302 |
| ApeKI | GCWGC | 2 cut(s) | 1209, 1571 |
| ApoI | RAATTY | 3 cut(s) | 656, 1288, 1578 |
| AspS9I | GGNCC | 3 cut(s) | 509, 687, 1302 |
| AsuHPI | GGTGA | 2 cut(s) | 590, 1498 |
| AsuII | TTCGAA | 1 cut(s) | 417 |
| AvaII | GGWCC | 2 cut(s) | 509, 687 |
| BaeGI | GKGCMC | 1 cut(s) | 904 |
| BanII | GRGCYC | 2 cut(s) | 51, 293 |
| BbsI | GAAGAC | 3 cut(s) | 117, 538, 1344 |
| Bbv12I | GWGCWC | 2 cut(s) | 51, 293 |
| BbvI | GCAGC | 2 cut(s) | 1196, 1558 |
| BccI | CCATC | 3 cut(s) | 475, 569, 1227 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 728, 762 |
| BciT130I | CCWGG | 3 cut(s) | 905, 1192, 1500 |
| BciVI | GTATCC | 1 cut(s) | 187 |
| BclI | TGATCA | 1 cut(s) | 1002 |
| BcoDI | GTCTC | 4 cut(s) | 251, 379, 598, 1563 |
| BfaI | CTAG | 4 cut(s) | 186, 266, 1274, 1416 |
| BfuI | GTATCC | 1 cut(s) | 187 |
| BglII | AGATCT | 2 cut(s) | 1047, 1152 |
| BisI | GCNGC | 3 cut(s) | 1210, 1359, 1572 |
| BlsI | GCNGC | 3 cut(s) | 1211, 1360, 1573 |
| BmcAI | AGTACT | 2 cut(s) | 552, 1598 |
| Bme1390I | CCNGG | 3 cut(s) | 905, 1192, 1500 |
| Bme18I | GGWCC | 2 cut(s) | 509, 687 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 236 |
| BmgT120I | GGNCC | 3 cut(s) | 509, 687, 1302 |
| BmiI | GGNNCC | 1 cut(s) | 38 |
| BmrFI | CCNGG | 3 cut(s) | 905, 1192, 1500 |
| BmrI | ACTGGG | 1 cut(s) | 536 |
| BmsI | GCATC | 5 cut(s) | 322, 435, 487, 625, 1027 |
| BmuI | ACTGGG | 1 cut(s) | 536 |
| BpiI | GAAGAC | 3 cut(s) | 117, 538, 1344 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1439, 1471 |
| Bpu14I | TTCGAA | 1 cut(s) | 417 |
| BsaAI | YACGTR | 1 cut(s) | 197 |
| BsaHI | GRCGYC | 1 cut(s) | 1089 |
| BsaI | GGTCTC | 1 cut(s) | 379 |
| BsaJI | CCNNGG | 4 cut(s) | 180, 903, 1190, 1191 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 318, 964 |
| Bse1I | ACTGG | 7 cut(s) | 225, 236, 531, 642, 795, 874, 1445 |
| Bse3DI | GCAATG | 3 cut(s) | 361, 511, 734 |
| BseBI | CCWGG | 3 cut(s) | 905, 1192, 1500 |
| BseDI | CCNNGG | 4 cut(s) | 180, 903, 1190, 1191 |
| BseGI | GGATG | 4 cut(s) | 337, 889, 937, 1561 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 318, 964 |
| BseMI | GCAATG | 3 cut(s) | 361, 511, 734 |
| BseMII | CTCAG | 1 cut(s) | 721 |
| BseNI | ACTGG | 7 cut(s) | 225, 236, 531, 642, 795, 874, 1445 |
| BseRI | GAGGAG | 3 cut(s) | 743, 1271, 1477 |
| BseSI | GKGCMC | 1 cut(s) | 904 |
| BseXI | GCAGC | 2 cut(s) | 1196, 1558 |
| BseYI | CCCAGC | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 122 |
| BshFI | GGCC | 2 cut(s) | 564, 1304 |
| BsiHKAI | GWGCWC | 2 cut(s) | 51, 293 |
| BslFI | GGGAC | 4 cut(s) | 243, 1381, 1536, 1565 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 318, 964 |
| BsmAI | GTCTC | 4 cut(s) | 251, 379, 598, 1563 |
| BsmFI | GGGAC | 4 cut(s) | 243, 1381, 1536, 1565 |
| BsmI | GAATGC | 2 cut(s) | 85, 388 |
| BsnI | GGCC | 2 cut(s) | 564, 1304 |
| Bso31I | GGTCTC | 1 cut(s) | 379 |
| Bsp119I | TTCGAA | 1 cut(s) | 417 |
| Bsp1286I | GDGCHC | 3 cut(s) | 51, 293, 904 |
| Bsp1407I | TGTACA | 1 cut(s) | 3 |
| Bsp143I | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| BspACI | CCGC | 1 cut(s) | 1358 |
| BspANI | GGCC | 2 cut(s) | 564, 1304 |
| BspCNI | CTCAG | 1 cut(s) | 720 |
| BspLI | GGNNCC | 1 cut(s) | 38 |
| BspPI | GGATC | 2 cut(s) | 27, 841 |
| BspT104I | TTCGAA | 1 cut(s) | 417 |
| BspTNI | GGTCTC | 1 cut(s) | 379 |
| BsrDI | GCAATG | 3 cut(s) | 361, 511, 734 |
| BsrGI | TGTACA | 1 cut(s) | 3 |
| BsrI | ACTGG | 7 cut(s) | 225, 236, 531, 642, 795, 874, 1445 |
| BssECI | CCNNGG | 4 cut(s) | 180, 903, 1190, 1191 |
| BssMI | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| BssNAI | GTATAC | 1 cut(s) | 191 |
| BssNI | GRCGYC | 1 cut(s) | 1089 |
| BssT1I | CCWWGG | 1 cut(s) | 180 |
| Bst1107I | GTATAC | 1 cut(s) | 191 |
| Bst2UI | CCWGG | 3 cut(s) | 905, 1192, 1500 |
| Bst4CI | ACNGT | 1 cut(s) | 245 |
| Bst6I | CTCTTC | 1 cut(s) | 1659 |
| BstACI | GRCGYC | 1 cut(s) | 1089 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 791, 1037 |
| BstAUI | TGTACA | 1 cut(s) | 3 |
| BstBAI | YACGTR | 1 cut(s) | 197 |
| BstBI | TTCGAA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 4 cut(s) | 502, 1214, 1321, 1356 |
| BstDEI | CTNAG | 5 cut(s) | 586, 652, 707, 972, 1362 |
| BstF5I | GGATG | 4 cut(s) | 337, 889, 937, 1561 |
| BstKTI | GATC | 7 cut(s) | 22, 849, 1005, 1050, 1155, 1201, 1222 |
| BstMAI | GTCTC | 4 cut(s) | 251, 379, 598, 1563 |
| BstMBI | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 791, 1037 |
| BstNI | CCWGG | 3 cut(s) | 905, 1192, 1500 |
| BstNSI | RCATGY | 6 cut(s) | 504, 813, 897, 916, 1119, 1216 |
| BstSCI | CCNGG | 3 cut(s) | 903, 1190, 1498 |
| BstSLI | GKGCMC | 1 cut(s) | 904 |
| BstV1I | GCAGC | 2 cut(s) | 1196, 1558 |
| BstV2I | GAAGAC | 3 cut(s) | 117, 538, 1344 |
| BstX2I | RGATCY | 4 cut(s) | 19, 846, 1047, 1152 |
| BstYI | RGATCY | 4 cut(s) | 19, 846, 1047, 1152 |
| BstZ17I | GTATAC | 1 cut(s) | 191 |
| BsuI | GTATCC | 1 cut(s) | 187 |
| BsuRI | GGCC | 2 cut(s) | 564, 1304 |
| BtsCI | GGATG | 4 cut(s) | 337, 889, 937, 1561 |
| BtsI | GCAGTG | 3 cut(s) | 373, 1110, 1307 |
| BtsIMutI | CAGTG | 7 cut(s) | 218, 241, 373, 524, 802, 1110, 1307 |
| Cac8I | GCNNGC | 4 cut(s) | 502, 1214, 1321, 1356 |
| Cfr13I | GGNCC | 3 cut(s) | 509, 687, 1302 |
| Csp6I | GTAC | 5 cut(s) | 4, 551, 969, 1283, 1597 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1294, 1329 |
| CviQI | GTAC | 5 cut(s) | 4, 551, 969, 1283, 1597 |
| DdeI | CTNAG | 5 cut(s) | 586, 652, 707, 972, 1362 |
| DpnI | GATC | 7 cut(s) | 21, 848, 1004, 1049, 1154, 1200, 1221 |
| DpnII | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| DraI | TTTAAA | 1 cut(s) | 1593 |
| DraIII | CACNNNGTG | 1 cut(s) | 341 |
| DriI | GACNNNNNGTC | 1 cut(s) | 236 |
| Eam1104I | CTCTTC | 1 cut(s) | 1659 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 236 |
| EarI | CTCTTC | 1 cut(s) | 1659 |
| Ecl136II | GAGCTC | 2 cut(s) | 49, 291 |
| Eco130I | CCWWGG | 1 cut(s) | 180 |
| Eco147I | AGGCCT | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 2 cut(s) | 51, 293 |
| Eco31I | GGTCTC | 1 cut(s) | 379 |
| Eco47I | GGWCC | 2 cut(s) | 509, 687 |
| Eco53kI | GAGCTC | 2 cut(s) | 49, 291 |
| Eco57I | CTGAAG | 4 cut(s) | 44, 492, 1161, 1391 |
| EcoICRI | GAGCTC | 2 cut(s) | 49, 291 |
| EcoRI | GAATTC | 1 cut(s) | 656 |
| EcoRII | CCWGG | 3 cut(s) | 903, 1190, 1498 |
| EcoT14I | CCWWGG | 1 cut(s) | 180 |
| EcoT22I | ATGCAT | 2 cut(s) | 502, 1042 |
| EcoT38I | GRGCYC | 2 cut(s) | 51, 293 |
| ErhI | CCWWGG | 1 cut(s) | 180 |
| FaqI | GGGAC | 4 cut(s) | 243, 1381, 1536, 1565 |
| FauNDI | CATATG | 1 cut(s) | 1402 |
| FbaI | TGATCA | 1 cut(s) | 1002 |
| FblI | GTMKAC | 2 cut(s) | 190, 909 |
| Fnu4HI | GCNGC | 3 cut(s) | 1210, 1359, 1572 |
| FokI | GGATG | 4 cut(s) | 344, 896, 944, 1548 |
| FriOI | GRGCYC | 2 cut(s) | 51, 293 |
| Fsp4HI | GCNGC | 3 cut(s) | 1210, 1359, 1572 |
| FspBI | CTAG | 4 cut(s) | 186, 266, 1274, 1416 |
| GluI | GCNGC | 3 cut(s) | 1210, 1359, 1572 |
| GsaI | CCCAGC | 1 cut(s) | 288 |
| HaeIII | GGCC | 2 cut(s) | 564, 1304 |
| Hin1I | GRCGYC | 1 cut(s) | 1089 |
| HincII | GTYRAC | 1 cut(s) | 891 |
| HindII | GTYRAC | 1 cut(s) | 891 |
| HinfI | GANTC | 5 cut(s) | 705, 1160, 1183, 1430, 1646 |
| HpaI | GTTAAC | 1 cut(s) | 891 |
| HphI | GGTGA | 2 cut(s) | 590, 1498 |
| Hpy166II | GTNNAC | 6 cut(s) | 6, 191, 241, 430, 891, 910 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 140, 390, 472 |
| Hpy188III | TCNNGA | 9 cut(s) | 62, 250, 266, 347, 376, 440, 702, 749, 1434 |
| Hpy8I | GTNNAC | 6 cut(s) | 6, 191, 241, 430, 891, 910 |
| Hpy99I | CGWCG | 1 cut(s) | 1091 |
| HpyAV | CCTTC | 4 cut(s) | 19, 1126, 1136, 1366 |
| HpyCH4III | ACNGT | 1 cut(s) | 245 |
| HpyCH4IV | ACGT | 2 cut(s) | 196, 1089 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 791, 1037 |
| HpyF3I | CTNAG | 5 cut(s) | 586, 652, 707, 972, 1362 |
| HpySE526I | ACGT | 2 cut(s) | 196, 1089 |
| Hsp92I | GRCGYC | 1 cut(s) | 1089 |
| Ksp22I | TGATCA | 1 cut(s) | 1002 |
| KspAI | GTTAAC | 1 cut(s) | 891 |
| Kzo9I | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| LmnI | GCTCC | 2 cut(s) | 288, 296 |
| Lsp1109I | GCAGC | 2 cut(s) | 1196, 1558 |
| LweI | GCATC | 5 cut(s) | 322, 435, 487, 625, 1027 |
| MaeI | CTAG | 4 cut(s) | 186, 266, 1274, 1416 |
| MaeII | ACGT | 2 cut(s) | 196, 1089 |
| MaeIII | GTNAC | 3 cut(s) | 475, 578, 1090 |
| MalI | GATC | 7 cut(s) | 21, 848, 1004, 1049, 1154, 1200, 1221 |
| MboI | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| MflI | RGATCY | 4 cut(s) | 19, 846, 1047, 1152 |
| MhlI | GDGCHC | 3 cut(s) | 51, 293, 904 |
| MlyI | GAGTC | 1 cut(s) | 699 |
| MmeI | TCCRAC | 2 cut(s) | 73, 1490 |
| Mph1103I | ATGCAT | 2 cut(s) | 502, 1042 |
| MseI | TTAA | 7 cut(s) | 255, 876, 890, 1044, 1245, 1491, 1592 |
| MslI | CAYNNNNRTG | 2 cut(s) | 366, 1566 |
| MspR9I | CCNGG | 3 cut(s) | 905, 1192, 1500 |
| Mva1269I | GAATGC | 2 cut(s) | 85, 388 |
| MvaI | CCWGG | 3 cut(s) | 905, 1192, 1500 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 791, 1037 |
| NdeI | CATATG | 1 cut(s) | 1402 |
| NdeII | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| NlaIV | GGNNCC | 1 cut(s) | 38 |
| NmuCI | GTSAC | 2 cut(s) | 578, 1090 |
| NsiI | ATGCAT | 2 cut(s) | 502, 1042 |
| NspI | RCATGY | 6 cut(s) | 504, 813, 897, 916, 1119, 1216 |
| NspV | TTCGAA | 1 cut(s) | 417 |
| PaeI | GCATGC | 2 cut(s) | 504, 1216 |
| PasI | CCCWGGG | 1 cut(s) | 1191 |
| PceI | AGGCCT | 1 cut(s) | 564 |
| PciI | ACATGT | 2 cut(s) | 893, 912 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 754 |
| PctI | GAATGC | 2 cut(s) | 85, 388 |
| PfeI | GAWTC | 4 cut(s) | 1160, 1183, 1430, 1646 |
| PflFI | GACNNNGTC | 2 cut(s) | 708, 1088 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 964 |
| PkrI | GCNGC | 3 cut(s) | 1211, 1360, 1573 |
| PleI | GAGTC | 1 cut(s) | 699 |
| PpsI | GAGTC | 1 cut(s) | 699 |
| Ppu21I | YACGTR | 1 cut(s) | 197 |
| PscI | ACATGT | 2 cut(s) | 893, 912 |
| Psp124BI | GAGCTC | 2 cut(s) | 51, 293 |
| Psp6I | CCWGG | 3 cut(s) | 903, 1190, 1498 |
| PspFI | CCCAGC | 1 cut(s) | 284 |
| PspGI | CCWGG | 3 cut(s) | 903, 1190, 1498 |
| PspN4I | GGNNCC | 1 cut(s) | 38 |
| PspPI | GGNCC | 3 cut(s) | 509, 687, 1302 |
| PsuI | RGATCY | 4 cut(s) | 19, 846, 1047, 1152 |
| PsyI | GACNNNGTC | 2 cut(s) | 708, 1088 |
| RsaI | GTAC | 5 cut(s) | 5, 552, 970, 1284, 1598 |
| RsaNI | GTAC | 5 cut(s) | 4, 551, 969, 1283, 1597 |
| RseI | CAYNNNNRTG | 2 cut(s) | 366, 1566 |
| SacI | GAGCTC | 2 cut(s) | 51, 293 |
| SaqAI | TTAA | 7 cut(s) | 255, 876, 890, 1044, 1245, 1491, 1592 |
| SatI | GCNGC | 3 cut(s) | 1210, 1359, 1572 |
| Sau3AI | GATC | 7 cut(s) | 19, 846, 1002, 1047, 1152, 1198, 1219 |
| Sau96I | GGNCC | 3 cut(s) | 509, 687, 1302 |
| ScaI | AGTACT | 2 cut(s) | 552, 1598 |
| SchI | GAGTC | 1 cut(s) | 699 |
| ScrFI | CCNGG | 3 cut(s) | 905, 1192, 1500 |
| SduI | GDGCHC | 3 cut(s) | 51, 293, 904 |
| SfaNI | GCATC | 5 cut(s) | 322, 435, 487, 625, 1027 |
| SfuI | TTCGAA | 1 cut(s) | 417 |
| SinI | GGWCC | 2 cut(s) | 509, 687 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 366, 1566 |
| SphI | GCATGC | 2 cut(s) | 504, 1216 |
| SseBI | AGGCCT | 1 cut(s) | 564 |
| SsiI | CCGC | 1 cut(s) | 1358 |
| SspMI | CTAG | 4 cut(s) | 186, 266, 1274, 1416 |
| SstI | GAGCTC | 2 cut(s) | 51, 293 |
| StuI | AGGCCT | 1 cut(s) | 564 |
| StyD4I | CCNGG | 3 cut(s) | 903, 1190, 1498 |
| StyI | CCWWGG | 1 cut(s) | 180 |
| TaaI | ACNGT | 1 cut(s) | 245 |
| TaiI | ACGT | 2 cut(s) | 199, 1092 |
| TaqI | TCGA | 6 cut(s) | 251, 377, 417, 748, 805, 1181 |
| TatI | WGTACW | 3 cut(s) | 3, 550, 1596 |
| TauI | GCSGC | 1 cut(s) | 1361 |
| TfiI | GAWTC | 4 cut(s) | 1160, 1183, 1430, 1646 |
| Tru1I | TTAA | 7 cut(s) | 255, 876, 890, 1044, 1245, 1491, 1592 |
| Tru9I | TTAA | 7 cut(s) | 255, 876, 890, 1044, 1245, 1491, 1592 |
| TscAI | CASTG | 7 cut(s) | 225, 248, 373, 531, 802, 1117, 1314 |
| TseFI | GTSAC | 2 cut(s) | 578, 1090 |
| TseI | GCWGC | 2 cut(s) | 1209, 1571 |
| Tsp45I | GTSAC | 2 cut(s) | 578, 1090 |
| TspRI | CASTG | 7 cut(s) | 225, 248, 373, 531, 802, 1117, 1314 |
| Tth111I | GACNNNGTC | 2 cut(s) | 708, 1088 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 964 |
| VpaK11BI | GGWCC | 2 cut(s) | 509, 687 |
| XapI | RAATTY | 3 cut(s) | 656, 1288, 1578 |
| XbaI | TCTAGA | 1 cut(s) | 265 |
| XceI | RCATGY | 6 cut(s) | 504, 813, 897, 916, 1119, 1216 |
| XmiI | GTMKAC | 2 cut(s) | 190, 909 |
| XspI | CTAG | 4 cut(s) | 186, 266, 1274, 1416 |
| ZraI | GACGTC | 1 cut(s) | 1090 |
| ZrmI | AGTACT | 2 cut(s) | 552, 1598 |
| Zsp2I | ATGCAT | 2 cut(s) | 502, 1042 |