Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

14353387 .. 14412233

Gene Structure 58847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0106500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGGAAGGGCTACTTGAGAATGAAGACTGACTCGGTTTCCGGCGATTTGATCAATTCCGATTTCAAAGACCTTGCTGCTGCTGCTAAGAAGCTTGCAAATCATGCCGTCCACCTCGGAAGCTTAGGCTTTGGTACCACTTTTCTTGAATGGATCGCTTCTTTTGCTGCAATTTATCTGTTGGTCTTGGATCGGACAAACTGGAAAACAAACATCCTCACAGGGCTGTTAATCCCGTACATATTCTTTAGCCTTCCGTCACTAATTTTCTCTATCTTCAGGGGAGAAATTGGAAGCTGGATTGCCTTCGTTGCGGTTATCTTGCGACTCTTTTTCCCTAAACGATTCCCAGAATGGGCTGAATTGCCGGCTGCGCTGATTCTTCTAATGGTTGTGGCTCCGAGTTTAATTGCAACCACTGTGAGGGATGACTGGATCGGCGTTGCAATATGTCTCGTCATTGCAGCTTACTTGCTGCAAGAACACATCCGGGCATCGGGTGGATTCGGAAAAGCTTTCACACAACCCCGTGGCGTATCAAACACTGTCGGCATAATTTGTCTGTTCATCTACCCTGTTTGGGCGTTGGTCCTTGACATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

201

Amino Acids

22.14

Weight (kDa)

8.95

Isoelectric Point (pI)

27.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WCOR413	PF05562	8 - 188	7.9e-86	Cold acclimation protein WCOR413

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	3 cut(s)	161, 198, 443
AcuI	CTGAAG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	136, 239
AfiI	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
AgsI	TTSAA	2 cut(s)	67, 149
AluBI	AGCT	5 cut(s)	94, 123, 297, 467, 515
AluI	AGCT	5 cut(s)	94, 123, 297, 467, 515
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	3 cut(s)	161, 198, 443
ApeKI	GCWGC	7 cut(s)	77, 80, 83, 167, 371, 464, 475
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	589
AsuC2I	CCSGG	1 cut(s)	491
AvaII	GGWCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	7 cut(s)	64, 67, 70, 154, 358, 462, 476
BceAI	ACGGC	1 cut(s)	92
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	602
BisI	GCNGC	7 cut(s)	78, 81, 84, 168, 372, 465, 476
BlsI	GCNGC	7 cut(s)	79, 82, 85, 169, 373, 466, 477
Bme1390I	CCNGG	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	589
BmiI	GGNNCC	2 cut(s)	136, 399
BmrFI	CCNGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	503
BpiI	GAAGAC	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	115, 529
Bsc4I	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	2 cut(s)	206, 437
Bse3DI	GCAATG	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	115, 529
BseGI	GGATG	4 cut(s)	213, 433, 486, 597
BseLI	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
BseMI	GCAATG	1 cut(s)	459
BseNI	ACTGG	2 cut(s)	206, 437
BseXI	GCAGC	7 cut(s)	64, 67, 70, 154, 358, 462, 476
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	42, 368, 490
BslI	CCNNNNNNNGG	4 cut(s)	355, 423, 496, 580
BsmAI	GTCTC	1 cut(s)	458
Bsp143I	GATC	4 cut(s)	51, 153, 190, 435
BspACI	CCGC	1 cut(s)	314
BspLI	GGNNCC	2 cut(s)	136, 399
BspPI	GGATC	3 cut(s)	161, 198, 443
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	206, 437
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	115, 529
BssMI	GATC	4 cut(s)	51, 153, 190, 435
Bst4CI	ACNGT	2 cut(s)	421, 547
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	96, 369
BstDEI	CTNAG	2 cut(s)	87, 124
BstDSI	CCRYGG	1 cut(s)	529
BstF5I	GGATG	4 cut(s)	213, 433, 486, 597
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	4 cut(s)	54, 156, 193, 438
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	4 cut(s)	51, 153, 190, 435
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 104, 164, 311, 373
BstSCI	CCNGG	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	602
BstV1I	GCAGC	7 cut(s)	64, 67, 70, 154, 358, 462, 476
BstV2I	GAAGAC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	529
BtsCI	GGATG	4 cut(s)	213, 433, 486, 597
BtsIMutI	CAGTG	2 cut(s)	417, 543
Cac8I	GCNNGC	2 cut(s)	96, 369
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	589
Csp6I	GTAC	2 cut(s)	135, 238
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	104
CviQI	GTAC	2 cut(s)	135, 238
DdeI	CTNAG	2 cut(s)	87, 124
DpnI	GATC	4 cut(s)	53, 155, 192, 437
DpnII	GATC	4 cut(s)	51, 153, 190, 435
Eco47I	GGWCC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	262
FaeI	CATG	1 cut(s)	107
FaiI	YATR	5 cut(s)	105, 242, 451, 554, 604
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	7 cut(s)	78, 81, 84, 168, 372, 465, 476
FokI	GGATG	4 cut(s)	200, 440, 473, 584
Fsp4HI	GCNGC	7 cut(s)	78, 81, 84, 168, 372, 465, 476
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	7 cut(s)	78, 81, 84, 168, 372, 465, 476
HapII	CCGG	3 cut(s)	42, 368, 490
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	1 cut(s)	107
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	3 cut(s)	92, 121, 513
HinfI	GANTC	5 cut(s)	32, 327, 345, 379, 504
HpaII	CCGG	3 cut(s)	42, 368, 490
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	5 cut(s)	61, 119, 195, 402, 509
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	263, 316
HpyCH4III	ACNGT	2 cut(s)	421, 547
HpyCH4V	TGCA	6 cut(s)	98, 170, 413, 446, 464, 478
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 104, 164, 311, 373
HpyF3I	CTNAG	2 cut(s)	87, 124
Hsp92II	CATG	1 cut(s)	107
HspAI	GCGC	1 cut(s)	374
KpnI	GGTACC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	51, 153, 190, 435
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	7 cut(s)	64, 67, 70, 154, 358, 462, 476
LweI	GCATC	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	258
MalI	GATC	4 cut(s)	53, 155, 192, 437
MboI	GATC	4 cut(s)	51, 153, 190, 435
MboII	GAAGA	3 cut(s)	37, 268, 374
MluCI	AATT	7 cut(s)	55, 171, 264, 288, 362, 408, 555
MlyI	GAGTC	2 cut(s)	26, 321
MnlI	CCTC	3 cut(s)	125, 227, 417
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	2 cut(s)	230, 407
MspI	CCGG	3 cut(s)	42, 368, 490
MspR9I	CCNGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	5 cut(s)	83, 104, 164, 311, 373
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	4 cut(s)	51, 153, 190, 435
NgoMIV	GCCGGC	1 cut(s)	367
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	2 cut(s)	136, 399
NmuCI	GTSAC	1 cut(s)	258
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	345, 379, 504
PkrI	GCNGC	7 cut(s)	79, 82, 85, 169, 373, 466, 477
PleI	GAGTC	2 cut(s)	26, 321
PpsI	GAGTC	2 cut(s)	26, 321
PspN4I	GGNNCC	2 cut(s)	136, 399
PspPI	GGNCC	1 cut(s)	589
RsaI	GTAC	2 cut(s)	136, 239
RsaNI	GTAC	2 cut(s)	135, 238
SaqAI	TTAA	2 cut(s)	230, 407
SatI	GCNGC	7 cut(s)	78, 81, 84, 168, 372, 465, 476
Sau3AI	GATC	4 cut(s)	51, 153, 190, 435
Sau96I	GGNCC	1 cut(s)	589
SchI	GAGTC	2 cut(s)	26, 321
ScrFI	CCNGG	1 cut(s)	491
SetI	ASST	7 cut(s)	75, 96, 117, 125, 299, 469, 517
SfaNI	GCATC	1 cut(s)	503
SfcI	CTRYAG	1 cut(s)	602
SinI	GGWCC	1 cut(s)	589
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	7 cut(s)	55, 171, 264, 288, 362, 408, 555
SsiI	CCGC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	421, 547
TasI	AATT	7 cut(s)	55, 171, 264, 288, 362, 408, 555
TfiI	GAWTC	3 cut(s)	345, 379, 504
Tru1I	TTAA	2 cut(s)	230, 407
Tru9I	TTAA	2 cut(s)	230, 407
TscAI	CASTG	2 cut(s)	424, 550
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	7 cut(s)	77, 80, 83, 167, 371, 464, 475
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	2 cut(s)	38, 556
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	2 cut(s)	424, 550
VpaK11BI	GGWCC	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.