Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Reverse (-)

157253 .. 160295

Gene Structure 3043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

atggagatggtgaggaatatttattgggactcgtttgcccaattcaggtctttctacaaacgggttttgaattttggcaatgagatgatgaagggttattggaaagtttggatctttcaaactttccatggactagttgcaattggttcattgctgtcctttgttgtagccatggcatttgcatatatgtatttgtttcccaccgttccctcggtagttcgaagttacgggatttcgaattcagctagttcgaattcaagtagttccgtagagaagtgcaatgtttatgaaggaagctggattgcagatgaaagttaccctttgtacaatgcatcactgtgtccatttgcagaacgtggatttaattgcttggctaatggaagggaagataggggttatgccaagtggaggtggaagcctaagaattgtgatattccaagattcgatgcgcgtaaagttcttgaagggcttcgtggaaaacgagttgtttttgtgggtgactcgctaagtagaacacagtgggagtctttgatatgtttactcatgacaggggtggaggataagaagagtgtttatgaagtgaatgggaataaaatcaccaagcagattagatttttatcggtacggtttacaacatttgatctcagaatggacttttaccggtcagttttcctagtgcagcgtgcttcaaagccagcgcgagcaccaaagagggttaagtcgacactcagaatcaacaggatagatgacattagcaaagaatggattgattcagatattttgatcttcaattcagggcactggtggacaccgagtaaactttttgaactgggctgctattttcaggttggtaaatcactgaagcttggaatgccgatcaccactgccttcaaaaaagctatgaacacttgggcatcttgggttgagacctcaatcaacacaaatagaacaagtgtcttcttcaggacttttgagtcatcacattggagtggccgacaccgtcattcttgcaaagtgggtcaacgcccttggttaagctcctggggaatggaccgaagcccagtttcagacaccattattaaggttgtgaggaaaatggcagttcctgtaacaattatgcatgttacacctatgggagcattccgaagtgatggtcatgtgggtatttggagtgataatccatctgtgcctgattgtagccattggtgcctacctggcgtacctgatatgtggaatgaaattctcttgtcatatctgctaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

421

Amino Acids

48.54

Weight (kDa)

9.63

Isoelectric Point (pI)

37.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	1206
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	2 cut(s)	451, 700
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	4 cut(s)	70, 238, 253, 1239
AcuI	CTGAAG	2 cut(s)	881, 946
AfaI	GTAC	3 cut(s)	326, 624, 1221
AfiI	CCNNNNNNNGG	2 cut(s)	45, 408
AgeI	ACCGGT	1 cut(s)	660
AgsI	TTSAA	8 cut(s)	70, 119, 258, 464, 690, 790, 827, 892
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	1040, 1213
AluBI	AGCT	5 cut(s)	245, 297, 865, 899, 1038
AluI	AGCT	5 cut(s)	245, 297, 865, 899, 1038
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	920
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	1106
AoxI	GGCC	1 cut(s)	991
ApeKI	GCWGC	2 cut(s)	679, 834
ApoI	RAATTY	4 cut(s)	70, 238, 253, 1239
ArsI	GACNNNNNNTTYG	2 cut(s)	1138, 1170
AsiGI	ACCGGT	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	451, 700
AspS9I	GGNCC	1 cut(s)	1051
AsuHPI	GGTGA	4 cut(s)	22, 509, 589, 871
AsuII	TTCGAA	3 cut(s)	220, 236, 251
AvaII	GGWCC	1 cut(s)	1051
BaeGI	GKGCMC	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	1206
BbsI	GAAGAC	1 cut(s)	949
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	691, 821
BccI	CCATC	2 cut(s)	1145, 1189
BciT130I	CCWGG	2 cut(s)	1042, 1215
BcoDI	GTCTC	1 cut(s)	920
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	3 cut(s)	134, 246, 674
BglI	GCCNNNNNGGC	1 cut(s)	1215
BisI	GCNGC	2 cut(s)	680, 835
BlsI	GCNGC	2 cut(s)	681, 836
Bme1390I	CCNGG	2 cut(s)	1042, 1215
Bme18I	GGWCC	1 cut(s)	1051
BmgT120I	GGNCC	1 cut(s)	1051
BmiI	GGNNCC	1 cut(s)	1208
BmrFI	CCNGG	2 cut(s)	1042, 1215
BmrI	ACTGGG	2 cut(s)	839, 1055
BmsI	GCATC	3 cut(s)	341, 436, 923
BmuI	ACTGGG	2 cut(s)	839, 1055
BpiI	GAAGAC	1 cut(s)	949
Bpu14I	TTCGAA	3 cut(s)	220, 236, 251
BsaBI	GATNNNNATC	1 cut(s)	616
BsaI	GGTCTC	1 cut(s)	920
BsaJI	CCNNGG	5 cut(s)	127, 171, 210, 1028, 1041
BsaWI	WCCGGW	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 408
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	3 cut(s)	806, 834, 1061
Bse3DI	GCAATG	3 cut(s)	85, 149, 286
Bse8I	GATNNNNATC	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	1042, 1215
BseDI	CCNNGG	5 cut(s)	127, 171, 210, 1028, 1041
BseJI	GATNNNNATC	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	45, 408
BseMI	GCAATG	3 cut(s)	85, 149, 286
BseMII	CTCAG	2 cut(s)	658, 742
BseNI	ACTGG	3 cut(s)	806, 834, 1061
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	2 cut(s)	691, 821
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	451, 700
BshFI	GGCC	1 cut(s)	993
BshNI	GGYRCC	1 cut(s)	1206
BshTI	ACCGGT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	45, 408
BsmAI	GTCTC	1 cut(s)	920
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	876, 1139
BsnI	GGCC	1 cut(s)	993
Bso31I	GGTCTC	1 cut(s)	920
Bsp119I	TTCGAA	3 cut(s)	220, 236, 251
Bsp1286I	GDGCHC	2 cut(s)	706, 801
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	111, 640, 783, 876
Bsp19I	CCATGG	2 cut(s)	127, 171
BspANI	GGCC	1 cut(s)	993
BspCNI	CTCAG	2 cut(s)	657, 741
BspFNI	CGCG	2 cut(s)	451, 700
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	1208
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	3 cut(s)	220, 236, 251
BspT107I	GGYRCC	1 cut(s)	1206
BspTNI	GGTCTC	1 cut(s)	920
BsrDI	GCAATG	3 cut(s)	85, 149, 286
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	3 cut(s)	806, 834, 1061
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	5 cut(s)	127, 171, 210, 1028, 1041
BssMI	GATC	4 cut(s)	111, 640, 783, 876
BssT1I	CCWWGG	3 cut(s)	127, 171, 1028
Bst2UI	CCWGG	2 cut(s)	1042, 1215
Bst4CI	ACNGT	5 cut(s)	205, 339, 519, 627, 1001
Bst6I	CTCTTC	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	3 cut(s)	220, 236, 251
BstC8I	GCNNGC	3 cut(s)	684, 696, 702
BstDEI	CTNAG	4 cut(s)	420, 506, 644, 728
BstDSI	CCRYGG	2 cut(s)	127, 171
BstFNI	CGCG	2 cut(s)	451, 700
BstHHI	GCGC	2 cut(s)	451, 700
BstKTI	GATC	4 cut(s)	114, 643, 786, 879
BstMAI	GTCTC	1 cut(s)	920
BstMBI	GATC	4 cut(s)	111, 640, 783, 876
BstMWI	GCNNNNNNNGC	3 cut(s)	871, 1206, 1215
BstNI	CCWGG	2 cut(s)	1042, 1215
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	2 cut(s)	1040, 1213
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	2 cut(s)	451, 700
BstV1I	GCAGC	2 cut(s)	691, 821
BstV2I	GAAGAC	1 cut(s)	949
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	993
BtgI	CCRYGG	2 cut(s)	127, 171
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	5 cut(s)	335, 524, 799, 857, 882
Cac8I	GCNNGC	3 cut(s)	684, 696, 702
CaiI	CAGNNNCTG	1 cut(s)	1106
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	2 cut(s)	451, 700
Cfr10I	RCCGGY	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	1051
Csp6I	GTAC	3 cut(s)	325, 623, 1220
CspAI	ACCGGT	1 cut(s)	660
CviAII	CATG	6 cut(s)	128, 172, 544, 1121, 1157, 1263
CviQI	GTAC	3 cut(s)	325, 623, 1220
DdeI	CTNAG	4 cut(s)	420, 506, 644, 728
DpnI	GATC	4 cut(s)	113, 642, 785, 878
DpnII	GATC	4 cut(s)	111, 640, 783, 876
DrdI	GACNNNNNNGTC	1 cut(s)	973
DseDI	GACNNNNNNGTC	1 cut(s)	973
EaeI	YGGCCR	1 cut(s)	991
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	3 cut(s)	127, 171, 1028
Eco31I	GGTCTC	1 cut(s)	920
Eco47I	GGWCC	1 cut(s)	1051
Eco57I	CTGAAG	2 cut(s)	881, 946
EcoRI	GAATTC	2 cut(s)	238, 253
EcoRII	CCWGG	2 cut(s)	1040, 1213
EcoT14I	CCWWGG	3 cut(s)	127, 171, 1028
EcoT22I	ATGCAT	2 cut(s)	334, 1122
ErhI	CCWWGG	3 cut(s)	127, 171, 1028
FaeI	CATG	6 cut(s)	131, 175, 547, 1124, 1160, 1266
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	6 cut(s)	127, 171, 543, 1120, 1156, 1262
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	2 cut(s)	680, 835
Fsp4HI	GCNGC	2 cut(s)	680, 835
FspBI	CTAG	3 cut(s)	134, 246, 674
GlaI	GCGC	2 cut(s)	450, 699
GluI	GCNGC	2 cut(s)	680, 835
HaeIII	GGCC	1 cut(s)	993
HapII	CCGG	1 cut(s)	661
HhaI	GCGC	2 cut(s)	451, 700
Hin1II	CATG	6 cut(s)	131, 175, 547, 1124, 1160, 1266
Hin6I	GCGC	2 cut(s)	449, 698
HinP1I	GCGC	2 cut(s)	449, 698
HincII	GTYRAC	2 cut(s)	723, 1022
HindII	GTYRAC	2 cut(s)	723, 1022
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	7 cut(s)	29, 441, 500, 524, 732, 770, 974
HpaII	CCGG	1 cut(s)	661
HphI	GGTGA	4 cut(s)	22, 509, 589, 871
Hpy166II	GTNNAC	6 cut(s)	539, 630, 723, 807, 818, 1022
Hpy188I	TCNGA	5 cut(s)	647, 731, 775, 1069, 1145
Hpy188III	TCNNGA	3 cut(s)	461, 544, 964
Hpy8I	GTNNAC	6 cut(s)	539, 630, 723, 807, 818, 1022
HpyAV	CCTTC	5 cut(s)	85, 284, 375, 458, 898
HpyCH4III	ACNGT	5 cut(s)	205, 339, 519, 627, 1001
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	9 cut(s)	140, 182, 279, 305, 332, 350, 679, 1011, 1120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	871, 1206, 1215
HpyF3I	CTNAG	4 cut(s)	420, 506, 644, 728
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	6 cut(s)	131, 175, 547, 1124, 1160, 1266
HspAI	GCGC	2 cut(s)	449, 698
Kzo9I	GATC	4 cut(s)	111, 640, 783, 876
LmnI	GCTCC	2 cut(s)	1043, 1136
Lsp1109I	GCAGC	2 cut(s)	691, 821
LweI	GCATC	3 cut(s)	341, 436, 923
MaeI	CTAG	3 cut(s)	134, 246, 674
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	5 cut(s)	224, 314, 497, 1108, 1123
MalI	GATC	4 cut(s)	113, 642, 785, 878
MboI	GATC	4 cut(s)	111, 640, 783, 876
MboII	GAAGA	5 cut(s)	398, 577, 778, 949, 952
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	706, 801
MlyI	GAGTC	4 cut(s)	23, 494, 533, 983
MnlI	CCTC	7 cut(s)	6, 220, 402, 550, 705, 940, 1083
Mph1103I	ATGCAT	2 cut(s)	334, 1122
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	363, 717, 1034, 1080
MslI	CAYNNNNRTG	2 cut(s)	337, 987
MspI	CCGG	1 cut(s)	661
MspR9I	CCNGG	2 cut(s)	1042, 1215
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	2 cut(s)	876, 1139
MvaI	CCWGG	2 cut(s)	1042, 1215
MvnI	CGCG	2 cut(s)	451, 700
MwoI	GCNNNNNNNGC	3 cut(s)	871, 1206, 1215
NcoI	CCATGG	2 cut(s)	127, 171
NdeII	GATC	4 cut(s)	111, 640, 783, 876
NlaIII	CATG	6 cut(s)	131, 175, 547, 1124, 1160, 1266
NlaIV	GGNNCC	1 cut(s)	1208
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	2 cut(s)	334, 1122
NspI	RCATGY	1 cut(s)	1124
NspV	TTCGAA	3 cut(s)	220, 236, 251
PagI	TCATGA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PctI	GAATGC	2 cut(s)	876, 1139
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	441, 732, 770
PflFI	GACNNNGTC	1 cut(s)	999
PinAI	ACCGGT	1 cut(s)	660
PkrI	GCNGC	2 cut(s)	681, 836
PleI	GAGTC	4 cut(s)	23, 494, 532, 982
PpsI	GAGTC	4 cut(s)	23, 494, 532, 982
Psp6I	CCWGG	2 cut(s)	1040, 1213
PspGI	CCWGG	2 cut(s)	1040, 1213
PspN4I	GGNNCC	1 cut(s)	1208
PspPI	GGNCC	1 cut(s)	1051
PstNI	CAGNNNCTG	1 cut(s)	1106
PsuI	RGATCY	1 cut(s)	111
PsyI	GACNNNGTC	1 cut(s)	999
RsaI	GTAC	3 cut(s)	326, 624, 1221
RsaNI	GTAC	3 cut(s)	325, 623, 1220
RseI	CAYNNNNRTG	2 cut(s)	337, 987
SalI	GTCGAC	1 cut(s)	721
SaqAI	TTAA	4 cut(s)	363, 717, 1034, 1080
SatI	GCNGC	2 cut(s)	680, 835
Sau3AI	GATC	4 cut(s)	111, 640, 783, 876
Sau96I	GGNCC	1 cut(s)	1051
SchI	GAGTC	4 cut(s)	23, 494, 533, 983
ScrFI	CCNGG	2 cut(s)	1042, 1215
SduI	GDGCHC	2 cut(s)	706, 801
SfaNI	GCATC	3 cut(s)	341, 436, 923
SfuI	TTCGAA	3 cut(s)	220, 236, 251
SinI	GGWCC	1 cut(s)	1051
SmiMI	CAYNNNNRTG	2 cut(s)	337, 987
SpeI	ACTAGT	1 cut(s)	133
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	134, 246, 674
StyD4I	CCNGG	2 cut(s)	1040, 1213
StyI	CCWWGG	3 cut(s)	127, 171, 1028
TaaI	ACNGT	5 cut(s)	205, 339, 519, 627, 1001
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	5 cut(s)	220, 236, 251, 444, 722
TaqII	GACCGA	1 cut(s)	1068
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	441, 732, 770
Tru1I	TTAA	4 cut(s)	363, 717, 1034, 1080
Tru9I	TTAA	4 cut(s)	363, 717, 1034, 1080
TscAI	CASTG	5 cut(s)	342, 524, 806, 864, 889
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	679, 834
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	7 cut(s)	104, 138, 303, 324, 591, 917, 1251
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	5 cut(s)	342, 524, 806, 864, 889
Tth111I	GACNNNGTC	1 cut(s)	999
VpaK11BI	GGWCC	1 cut(s)	1051
XapI	RAATTY	4 cut(s)	70, 238, 253, 1239
XceI	RCATGY	1 cut(s)	1124
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	134, 246, 674
Zsp2I	ATGCAT	2 cut(s)	334, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.