AT1G48880

GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18080408 .. 18082925
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G48880.1

Sequence Viewer

Length: 1338 bp
ATGAGTAATTTCACCAAGAGTTCATCATTCAATAGAAGGGCATTGAGTTCCTTAGCTATAGAAAGCCCTAGGAACTCATCTTCTAGTGTCTTCACTAGTCCCATTGGCTCAGCTTTCGCTAGCCCGAGATCACAGAACTTTGGAGGAAGTCCACGCCCTTCTACGAACCGGTTAAAAGAGATCTCATATTTGTTTCAGGTGCTTATCATCGCTGGAACTATTGTGTCGTTTCTTGTTATCATCGCTGGAGGTTATTTGTATGTTGTTCCTAGCCTTGGTCAAACGTTCTTAGGTTACAATGGGGCATTGGAGTTTAACAGCTCTGTTGTGGGTGATACAGAATGTGATATCTTCGATGGGAATTGGGTTGTTGACGATAACTACCCGTTATATAACGCTTCGGAGTGTCCATTTGTAGAGAAAGGGTTCAATTGCTTAGGGAATGGGCGTGGACACGATGAGTATTTGAAGTGGAGGTGGAAGCCTAAGCATTGTACTGTTCCAAGATTTGAAGTACGTGATGTATTGAAGAGATTAAGAGGGAAAAGGATAGTTTTTGTGGGAGATTCGATGAGTAGGACGCAGTGGGAGTCTTTGATATGCATGTTGATGACAGGGTTGGAAGATAAAAGGAGTGTTTATGAAGTCAATGGGAACAATATTACGAAAAGGATACGGTTTTTGGGTGTGAGGTTTAGCTCCTACAATTTTACAGTTGAGTTTTACCGATCGGTTTTCTTAGTTCAGCCTGGGAGGCTGCGTTGGCACGCACCGAAACGTGTTAAGTCAACGTTAAAGTTAGATGTTTTAGATGTTATTAACCACGAATGGAGCTCAGCTGATTTTCTCATATTCAATACTGGTCAATGGTGGGTGCCTGGGAAGCTTTTCGAAACGGGATGTTACTTTCAGGTTGGAAATTCACTGAGGCTCGGAATGTCAATTCCTGCAGCGTATAGAGTAGCATTAGAGACATGGGCATCATGGATAGAGAGTACAGTTGATCCAAACAAAACTCGGGTTTTGTTTCGTACATTTGAGCCATCGCATTGGAGTGATCATAGATCATGCAATGTGACAAAGTATCCAGCCCCAGACACTGAAGGAAGAGACAAAAGCATATTCTCTGAAATGATCAAAGAAGTAGTTAAGAACATGACGATTCCGGTATCAATATTGGATGTAACTTCGATGTCAGCGTTTAGAAGCGATGGTCATGTCGGTTTATGGAGCGATAATCCTTTGGTACCTGATTGTAGTCATTGGTGTCTACCTGGAGTACCTGATATCTGGAATGAGATCTTGCTCTTCTTCCTCTTTAGACAACCAGTTCAGTGA

Protein Analysis

445

Amino Acids

50.62

Weight (kDa)

8.87

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 114 - 165 2.2e-22 PMR5 N terminal Domain
PC-Esterase PF13839 167 - 436 4e-87 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1246
AccB1I GGYRCC 2 cut(s) 874, 1246
AccI GTMKAC 1 cut(s) 1270
AclI AACGTT 2 cut(s) 284, 791
AclWI GGATC 1 cut(s) 998
AcsI RAATTY 1 cut(s) 919
AcuI CTGAAG 1 cut(s) 1122
AfaI GTAC 6 cut(s) 496, 516, 997, 1033, 1248, 1281
AfiI CCNNNNNNNGG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 778
AgeI ACCGGT 1 cut(s) 168
AgsI TTSAA 6 cut(s) 31, 430, 469, 512, 529, 856
AhlI ACTAGT 1 cut(s) 95
AjnI CCWGG 3 cut(s) 748, 877, 1273
AluBI AGCT 7 cut(s) 56, 113, 321, 699, 834, 839, 886
AluI AGCT 7 cut(s) 56, 113, 321, 699, 834, 839, 886
Alw21I GWGCWC 1 cut(s) 836
Alw26I GTCTC 2 cut(s) 965, 1104
AlwI GGATC 1 cut(s) 998
AlwNI CAGNNNCTG 1 cut(s) 1100
Ama87I CYCGRG 2 cut(s) 124, 1017
ApeKI GCWGC 2 cut(s) 757, 950
ApoI RAATTY 1 cut(s) 919
AsiGI ACCGGT 1 cut(s) 168
Asp700I GAANNNNTTC 2 cut(s) 425, 887
Asp718I GGTACC 1 cut(s) 1246
AspA2I CCTAGG 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 4, 344
AsuII TTCGAA 1 cut(s) 891
AsuNHI GCTAGC 1 cut(s) 119
AvaI CYCGRG 2 cut(s) 124, 1017
AvrII CCTAGG 1 cut(s) 68
BanI GGYRCC 2 cut(s) 874, 1246
BanII GRGCYC 1 cut(s) 836
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 836
BbvI GCAGC 2 cut(s) 744, 962
BccI CCATC 3 cut(s) 350, 1051, 1205
BciT130I CCWGG 3 cut(s) 750, 879, 1275
BciVI GTATCC 2 cut(s) 666, 1095
BclI TGATCA 2 cut(s) 1057, 1134
BcoDI GTCTC 2 cut(s) 965, 1104
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 5 cut(s) 69, 84, 96, 120, 270
BfmI CTRYAG 2 cut(s) 57, 948
BfuI GTATCC 2 cut(s) 666, 1095
BglI GCCNNNNNGGC 1 cut(s) 754
BglII AGATCT 2 cut(s) 180, 1299
BisI GCNGC 2 cut(s) 758, 951
BlnI CCTAGG 1 cut(s) 68
BlpI GCTNAGC 2 cut(s) 109, 835
BlsI GCNGC 2 cut(s) 759, 952
Bme1390I CCNGG 3 cut(s) 750, 879, 1275
BmeT110I CYCGRG 2 cut(s) 124, 1017
BmiI GGNNCC 2 cut(s) 876, 1248
BmrFI CCNGG 3 cut(s) 750, 879, 1275
BmsI GCATC 1 cut(s) 989
BmtI GCTAGC 1 cut(s) 123
BpiI GAAGAC 1 cut(s) 82
BpmI CTGGAG 2 cut(s) 267, 1296
Bpu10I CCTNAGC 3 cut(s) 52, 436, 486
Bpu1102I GCTNAGC 2 cut(s) 109, 835
Bpu14I TTCGAA 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 4 cut(s) 68, 274, 749, 878
BsaWI WCCGGW 2 cut(s) 168, 1165
BsaXI ACNNNNNCTCC 2 cut(s) 745, 775
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 865, 1328
Bse3DI GCAATG 1 cut(s) 1078
BseBI CCWGG 3 cut(s) 750, 879, 1275
BseDI CCNNGG 4 cut(s) 68, 274, 749, 878
BseGI GGATG 2 cut(s) 905, 1186
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 1078
BseMII CTCAG 3 cut(s) 123, 849, 917
BseNI ACTGG 2 cut(s) 865, 1328
BseXI GCAGC 2 cut(s) 744, 962
Bsh1285I CGRYCG 1 cut(s) 731
BshNI GGYRCC 2 cut(s) 874, 1246
BshTI ACCGGT 1 cut(s) 168
BsiEI CGRYCG 1 cut(s) 731
BsiHKAI GWGCWC 1 cut(s) 836
BsiHKCI CYCGRG 2 cut(s) 124, 1017
BsiSI CCGG 2 cut(s) 169, 1166
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 965, 1104
BsmFI GGGAC 1 cut(s) 84
BsoBI CYCGRG 2 cut(s) 124, 1017
Bsp119I TTCGAA 1 cut(s) 891
Bsp1286I GDGCHC 1 cut(s) 836
Bsp143I GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
Bsp1720I GCTNAGC 2 cut(s) 109, 835
BspCNI CTCAG 3 cut(s) 122, 848, 918
BspLI GGNNCC 2 cut(s) 876, 1248
BspMAI CTGCAG 1 cut(s) 952
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 998
BspQI GCTCTTC 1 cut(s) 1313
BspT104I TTCGAA 1 cut(s) 891
BspT107I GGYRCC 2 cut(s) 874, 1246
BsrDI GCAATG 1 cut(s) 1078
BsrFI RCCGGY 1 cut(s) 168
BsrI ACTGG 2 cut(s) 865, 1328
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 4 cut(s) 68, 274, 749, 878
BssMI GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
BssT1I CCWWGG 2 cut(s) 68, 274
Bst2UI CCWGG 3 cut(s) 750, 879, 1275
Bst4CI ACNGT 4 cut(s) 499, 678, 715, 1000
Bst6I CTCTTC 3 cut(s) 524, 1102, 1313
BstBAI YACGTR 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 121, 768
BstDEI CTNAG 8 cut(s) 52, 109, 289, 436, 486, 739, 835, 926
BstF5I GGATG 2 cut(s) 905, 1186
BstKTI GATC 8 cut(s) 131, 183, 731, 1006, 1060, 1067, 1137, 1302
BstMAI GTCTC 2 cut(s) 965, 1104
BstMBI GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
BstMCI CGRYCG 1 cut(s) 731
BstMWI GCNNNNNNNGC 3 cut(s) 754, 763, 883
BstNI CCWGG 3 cut(s) 750, 879, 1275
BstNSI RCATGY 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 748, 877, 1273
BstSFI CTRYAG 2 cut(s) 57, 948
BstV1I GCAGC 2 cut(s) 744, 962
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 180, 1299
BstXI CCANNNNNNTGG 1 cut(s) 1050
BstYI RGATCY 2 cut(s) 180, 1299
BsuI GTATCC 2 cut(s) 666, 1095
BtgZI GCGATG 4 cut(s) 193, 226, 1029, 1224
BtsCI GGATG 2 cut(s) 905, 1186
BtsI GCAGTG 1 cut(s) 590
BtsIMutI CAGTG 3 cut(s) 590, 923, 1098
Cac8I GCNNGC 2 cut(s) 121, 768
CaiI CAGNNNCTG 1 cut(s) 1100
Cfr10I RCCGGY 1 cut(s) 168
CseI GACGC 1 cut(s) 589
Csp6I GTAC 6 cut(s) 495, 515, 996, 1032, 1247, 1280
CspAI ACCGGT 1 cut(s) 168
CviAII CATG 6 cut(s) 604, 975, 984, 1068, 1156, 1217
CviQI GTAC 6 cut(s) 495, 515, 996, 1032, 1247, 1280
DdeI CTNAG 8 cut(s) 52, 109, 289, 436, 486, 739, 835, 926
DpnI GATC 8 cut(s) 130, 182, 730, 1005, 1059, 1066, 1136, 1301
DpnII GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
Eam1104I CTCTTC 3 cut(s) 524, 1102, 1313
EarI CTCTTC 3 cut(s) 524, 1102, 1313
Ecl136II GAGCTC 1 cut(s) 834
Eco130I CCWWGG 2 cut(s) 68, 274
Eco24I GRGCYC 1 cut(s) 836
Eco32I GATATC 2 cut(s) 349, 1288
Eco53kI GAGCTC 1 cut(s) 834
Eco57I CTGAAG 1 cut(s) 1122
Eco88I CYCGRG 2 cut(s) 124, 1017
EcoICRI GAGCTC 1 cut(s) 834
EcoRII CCWGG 3 cut(s) 748, 877, 1273
EcoRV GATATC 2 cut(s) 349, 1288
EcoT14I CCWWGG 2 cut(s) 68, 274
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 836
ErhI CCWWGG 2 cut(s) 68, 274
FaeI CATG 6 cut(s) 607, 978, 987, 1071, 1159, 1220
FaqI GGGAC 1 cut(s) 84
FatI CATG 6 cut(s) 603, 974, 983, 1067, 1155, 1216
FbaI TGATCA 2 cut(s) 1057, 1134
FblI GTMKAC 1 cut(s) 1270
Fnu4HI GCNGC 2 cut(s) 758, 951
FokI GGATG 2 cut(s) 912, 1193
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 2 cut(s) 758, 951
FspBI CTAG 5 cut(s) 69, 84, 96, 120, 270
GluI GCNGC 2 cut(s) 758, 951
GsuI CTGGAG 2 cut(s) 267, 1296
HapII CCGG 2 cut(s) 169, 1166
HgaI GACGC 1 cut(s) 589
Hin1II CATG 6 cut(s) 607, 978, 987, 1071, 1159, 1220
HincII GTYRAC 2 cut(s) 373, 789
HindII GTYRAC 2 cut(s) 373, 789
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 3 cut(s) 566, 590, 1162
HpaII CCGG 2 cut(s) 169, 1166
HphI GGTGA 2 cut(s) 4, 344
Hpy166II GTNNAC 5 cut(s) 152, 373, 452, 789, 1271
Hpy188I TCNGA 3 cut(s) 403, 935, 1129
Hpy188III TCNNGA 1 cut(s) 1291
Hpy8I GTNNAC 5 cut(s) 152, 373, 452, 789, 1271
HpyAV CCTTC 3 cut(s) 30, 168, 1097
HpyCH4III ACNGT 4 cut(s) 499, 678, 715, 1000
HpyCH4IV ACGT 4 cut(s) 284, 517, 778, 791
HpyCH4V TGCA 3 cut(s) 603, 950, 1071
HpyF10VI GCNNNNNNNGC 3 cut(s) 754, 763, 883
HpyF3I CTNAG 8 cut(s) 52, 109, 289, 436, 486, 739, 835, 926
HpySE526I ACGT 4 cut(s) 284, 517, 778, 791
Hsp92II CATG 6 cut(s) 607, 978, 987, 1071, 1159, 1220
KpnI GGTACC 1 cut(s) 1250
Ksp22I TGATCA 2 cut(s) 1057, 1134
Kzo9I GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
LguI GCTCTTC 1 cut(s) 1313
LmnI GCTCC 3 cut(s) 704, 831, 1230
Lsp1109I GCAGC 2 cut(s) 744, 962
LweI GCATC 1 cut(s) 989
MaeI CTAG 5 cut(s) 69, 84, 96, 120, 270
MaeII ACGT 4 cut(s) 284, 517, 778, 791
MaeIII GTNAC 4 cut(s) 293, 902, 1075, 1183
MalI GATC 8 cut(s) 130, 182, 730, 1005, 1059, 1066, 1136, 1301
MboI GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
MboII GAAGA 8 cut(s) 72, 82, 343, 541, 635, 1119, 1300, 1303
MfeI CAATTG 1 cut(s) 430
MflI RGATCY 2 cut(s) 180, 1299
MhlI GDGCHC 1 cut(s) 836
MluCI AATT 6 cut(s) 7, 361, 430, 706, 919, 942
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 2 cut(s) 600, 895
MnlI CCTC 8 cut(s) 137, 242, 468, 533, 684, 747, 921, 1325
Mph1103I ATGCAT 1 cut(s) 605
MroXI GAANNNNTTC 2 cut(s) 425, 887
MseI TTAA 7 cut(s) 173, 315, 536, 783, 794, 819, 1149
MslI CAYNNNNRTG 2 cut(s) 608, 1053
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 2 cut(s) 169, 1166
MspR9I CCNGG 3 cut(s) 750, 879, 1275
MunI CAATTG 1 cut(s) 430
MvaI CCWGG 3 cut(s) 750, 879, 1275
MwoI GCNNNNNNNGC 3 cut(s) 754, 763, 883
NdeII GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 6 cut(s) 607, 978, 987, 1071, 1159, 1220
NlaIV GGNNCC 2 cut(s) 876, 1248
NmuCI GTSAC 1 cut(s) 1075
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 1 cut(s) 607
NspV TTCGAA 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 1313
PcsI WCGNNNNNNNCGW 1 cut(s) 1196
PdmI GAANNNNTTC 2 cut(s) 425, 887
PfeI GAWTC 2 cut(s) 566, 1162
PinAI ACCGGT 1 cut(s) 168
PkrI GCNGC 2 cut(s) 759, 952
Ple19I CGATCG 1 cut(s) 731
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 518
Psp124BI GAGCTC 1 cut(s) 836
Psp1406I AACGTT 2 cut(s) 284, 791
Psp6I CCWGG 3 cut(s) 748, 877, 1273
PspGI CCWGG 3 cut(s) 748, 877, 1273
PspN4I GGNNCC 2 cut(s) 876, 1248
PstI CTGCAG 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 1100
PsuI RGATCY 2 cut(s) 180, 1299
PvuI CGATCG 1 cut(s) 731
PvuII CAGCTG 1 cut(s) 839
RsaI GTAC 6 cut(s) 496, 516, 997, 1033, 1248, 1281
RsaNI GTAC 6 cut(s) 495, 515, 996, 1032, 1247, 1280
RseI CAYNNNNRTG 2 cut(s) 608, 1053
SacI GAGCTC 1 cut(s) 836
SapI GCTCTTC 1 cut(s) 1313
SaqAI TTAA 7 cut(s) 173, 315, 536, 783, 794, 819, 1149
SatI GCNGC 2 cut(s) 758, 951
Sau3AI GATC 8 cut(s) 128, 180, 728, 1003, 1057, 1064, 1134, 1299
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 3 cut(s) 750, 879, 1275
SduI GDGCHC 1 cut(s) 836
SfaNI GCATC 1 cut(s) 989
SfcI CTRYAG 2 cut(s) 57, 948
SfuI TTCGAA 1 cut(s) 891
SmiMI CAYNNNNRTG 2 cut(s) 608, 1053
SpeI ACTAGT 1 cut(s) 95
Sse9I AATT 6 cut(s) 7, 361, 430, 706, 919, 942
SspI AATATT 2 cut(s) 661, 1176
SspMI CTAG 5 cut(s) 69, 84, 96, 120, 270
SstI GAGCTC 1 cut(s) 836
StyD4I CCNGG 3 cut(s) 748, 877, 1273
StyI CCWWGG 2 cut(s) 68, 274
TaaI ACNGT 4 cut(s) 499, 678, 715, 1000
TaiI ACGT 4 cut(s) 287, 520, 781, 794
TaqI TCGA 4 cut(s) 354, 569, 891, 1190
TasI AATT 6 cut(s) 7, 361, 430, 706, 919, 942
TatI WGTACW 2 cut(s) 494, 995
TfiI GAWTC 2 cut(s) 566, 1162
Tru1I TTAA 7 cut(s) 173, 315, 536, 783, 794, 819, 1149
Tru9I TTAA 7 cut(s) 173, 315, 536, 783, 794, 819, 1149
TscAI CASTG 3 cut(s) 590, 930, 1105
TseFI GTSAC 1 cut(s) 1075
TseI GCWGC 2 cut(s) 757, 950
Tsp45I GTSAC 1 cut(s) 1075
TspDTI ATGAA 2 cut(s) 12, 657
TspRI CASTG 3 cut(s) 590, 930, 1105
XapI RAATTY 1 cut(s) 919
XceI RCATGY 1 cut(s) 607
XmaJI CCTAGG 1 cut(s) 68
XmiI GTMKAC 1 cut(s) 1270
XmnI GAANNNNTTC 2 cut(s) 425, 887
XspI CTAG 5 cut(s) 69, 84, 96, 120, 270
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.