Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

31723513 .. 31725970

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018550

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGATGGAGACAATGAGCAGTTCAAGTAGGACTACGTCATTCAGCCCGACTACATCATTCAATAGGAGCACATCATTCAATAGAAGTACATCATTCAAATCAAGAACCCCGACTGCAGCAAGTCCAACCGTCAGTCAATCTAGCTGGGTGTCGCGGGTTAGTCCCTTTAGCTGGGTCTCGCGTTGGTTTCACACACTCATAGTGATTTTCACATTCATTTCGTTTCTCATTGCCGTTTATGGGGGTTATCTATATGTGATGCCAAGTATCAACCTGACTTTTCATGGTTATGGTGTTTTGGAACCTGCTCAGTCGATAAGCAGTTGCAATACGTTTGATGGAAGTTGGGTTGTTGATGATAATTACCCATTGTACAATGCTACAGAGTGTCCCTTTGTGGAGCAGGGGTTCAATTGTTTGGCTAATGGTCGAAGAGATAAGGATTATCTGAAATATAGGTGGAAACCCAATAATTGTGATATACCAAGATTTAATGTGCAGAGTATATTGGACAAGCTTAGAGGAAAAAGAGTTGTTTTTGTGGGGGATTCTATGAGTAGAACACAGTGGGAGTCACTAATTTGCTTGCTCATGACTGGGGTGGAGGATAAGAAGAGTGTCTATGAAGTCAACAGGAATAAGATTACCAAACAGATCAGATATTTGGGTGTTCGCTTCAGTTCCTTCAATTTTACTGTCGAGTTCTTTCGATCAGTTTTCCTGGTTCAACAGGGTTGGATGCCTAGACATGCTCCAAAGAGGGTCAAGTCTATACTAAAGTTGGACAAGTTAGATGACATTAGCAATCAGTGGATTAATTCAGATGTTCTGATATTCAACACGGGACAGTGGTGGGTTCCAGGAAAACTCTTTGACACGGGTTGCTATTTCCAGGTTGGAAACTCACTAAAGCTTGGAATGTCAATTCCTACTGCCTTTAGAACAGCACTGGATACTTGGGCAGCTTGGGTTGAGGAAAAGATCGCCACTAACAGAACTCATGTCTTTTTTCGGACTTTTGAGCCCTCTCACTGGAGTGATCCAACTCGTAGATTTTGCAATGTGACTGACCACCCCATATTCGACACCAGAGGTAGGGACAGAAGCATATTTTCAGACACTGTACATGAGGTGGTCAAGAATATGACAGTTCCTGTAGCCATTCTTCATGTGACTTCCATGTCATCTTTCCGAAGTGATGCACATGTCGGTAACTGGAGCGATAAACCATCTGTTCCTGATTGTAGCCACTGGTGTCTTCCAGGATTACCTGATGTATGGAATGAAATCATCCTCTTTTACCTGTTTAATGACAAAGGGCTTCCTTTTCTAGAGGGATTCGAGCCTTGGCATTCTGGTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

455

Amino Acids

52.21

Weight (kDa)

8.96

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	108 - 160	5.6e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	161 - 432	2.9e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1180
Acc36I	ACCTGC	1 cut(s)	313
AccII	CGCG	2 cut(s)	154, 181
AciI	CCGC	1 cut(s)	154
AclWI	GGATC	1 cut(s)	1034
AcuI	CTGAAG	1 cut(s)	661
AfaI	GTAC	3 cut(s)	88, 374, 1125
AfiI	CCNNNNNNNGG	4 cut(s)	171, 240, 1032, 1095
AflIII	ACRYGT	1 cut(s)	1204
AgsI	TTSAA	8 cut(s)	24, 61, 79, 97, 412, 688, 728, 838
AjnI	CCWGG	4 cut(s)	720, 859, 891, 1261
AleI	CACNNNNGTG	1 cut(s)	1035
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	144, 171, 517, 913, 965
AluI	AGCT	5 cut(s)	144, 171, 517, 913, 965
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	2 cut(s)	2, 181
AlwI	GGATC	1 cut(s)	1034
AlwNI	CAGNNNCTG	2 cut(s)	1121, 1154
ApeKI	GCWGC	2 cut(s)	116, 962
AseI	ATTAAT	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	1026
BarI	GAAGNNNNNNTAC	2 cut(s)	1149, 1181
BbsI	GAAGAC	1 cut(s)	1250
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	128, 974
BccI	CCATC	2 cut(s)	332, 1237
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	4 cut(s)	722, 861, 893, 1263
BciVI	GTATCC	1 cut(s)	946
BcoDI	GTCTC	2 cut(s)	2, 181
BfaI	CTAG	3 cut(s)	141, 744, 1331
BfmI	CTRYAG	3 cut(s)	114, 381, 1155
BfuAI	ACCTGC	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	2 cut(s)	117, 963
BlsI	GCNGC	2 cut(s)	118, 964
Bme1390I	CCNGG	4 cut(s)	722, 861, 893, 1263
BmiI	GGNNCC	2 cut(s)	303, 858
BmrFI	CCNGG	4 cut(s)	722, 861, 893, 1263
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	3 cut(s)	249, 729, 1189
BmuI	ACTGGG	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	1250
BpmI	CTGGAG	2 cut(s)	1054, 1237
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	1346
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 240, 1032, 1095
Bse1I	ACTGG	5 cut(s)	601, 954, 1037, 1220, 1256
Bse3DI	GCAATG	2 cut(s)	228, 1066
BseBI	CCWGG	4 cut(s)	722, 861, 893, 1263
BseDI	CCNNGG	1 cut(s)	1346
BseGI	GGATG	2 cut(s)	744, 1290
BseLI	CCNNNNNNNGG	4 cut(s)	171, 240, 1032, 1095
BseMI	GCAATG	2 cut(s)	228, 1066
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	5 cut(s)	601, 954, 1037, 1220, 1256
BseXI	GCAGC	2 cut(s)	128, 974
BseYI	CCCAGC	2 cut(s)	144, 171
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	154, 181
BsiHKAI	GWGCWC	1 cut(s)	71
BslFI	GGGAC	4 cut(s)	147, 375, 858, 1112
BslI	CCNNNNNNNGG	4 cut(s)	171, 240, 1032, 1095
BsmAI	GTCTC	2 cut(s)	2, 181
BsmFI	GGGAC	4 cut(s)	147, 375, 858, 1112
BsmI	GAATGC	1 cut(s)	1351
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	71, 1026
Bsp1407I	TGTACA	2 cut(s)	372, 1123
Bsp143I	GATC	4 cut(s)	654, 710, 981, 1039
BspACI	CCGC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	154, 181
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	303, 858
BspMAI	CTGCAG	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	1034
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	2 cut(s)	228, 1066
BsrGI	TGTACA	2 cut(s)	372, 1123
BsrI	ACTGG	5 cut(s)	601, 954, 1037, 1220, 1256
BssECI	CCNNGG	1 cut(s)	1346
BssMI	GATC	4 cut(s)	654, 710, 981, 1039
BssT1I	CCWWGG	1 cut(s)	1346
Bst2UI	CCWGG	4 cut(s)	722, 861, 893, 1263
Bst4CI	ACNGT	6 cut(s)	130, 567, 697, 849, 1123, 1150
Bst6I	CTCTTC	2 cut(s)	427, 608
BstAUI	TGTACA	2 cut(s)	372, 1123
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	2 cut(s)	309, 518
BstF5I	GGATG	2 cut(s)	744, 1290
BstFNI	CGCG	2 cut(s)	154, 181
BstKTI	GATC	4 cut(s)	657, 713, 984, 1042
BstMAI	GTCTC	2 cut(s)	2, 181
BstMBI	GATC	4 cut(s)	654, 710, 981, 1039
BstNI	CCWGG	4 cut(s)	722, 861, 893, 1263
BstNSI	RCATGY	2 cut(s)	752, 1208
BstSCI	CCNGG	4 cut(s)	720, 859, 891, 1261
BstSFI	CTRYAG	3 cut(s)	114, 381, 1155
BstUI	CGCG	2 cut(s)	154, 181
BstV1I	GCAGC	2 cut(s)	128, 974
BstV2I	GAAGAC	1 cut(s)	1250
BsuI	GTATCC	1 cut(s)	946
BtsCI	GGATG	2 cut(s)	744, 1290
BtsIMutI	CAGTG	7 cut(s)	572, 815, 854, 947, 1030, 1119, 1249
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	2 cut(s)	1121, 1154
CciI	TCATGA	1 cut(s)	591
Csp6I	GTAC	3 cut(s)	87, 373, 1124
CviAII	CATG	8 cut(s)	284, 592, 749, 1001, 1127, 1169, 1180, 1205
CviQI	GTAC	3 cut(s)	87, 373, 1124
DdeI	CTNAG	2 cut(s)	309, 518
DpnI	GATC	4 cut(s)	656, 712, 983, 1041
DpnII	GATC	4 cut(s)	654, 710, 981, 1039
DrdI	GACNNNNNNGTC	1 cut(s)	1180
DseDI	GACNNNNNNGTC	1 cut(s)	1180
Eam1104I	CTCTTC	2 cut(s)	427, 608
EarI	CTCTTC	2 cut(s)	427, 608
Eco130I	CCWWGG	1 cut(s)	1346
Eco24I	GRGCYC	1 cut(s)	1026
Eco31I	GGTCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	661
EcoRII	CCWGG	4 cut(s)	720, 859, 891, 1261
EcoT14I	CCWWGG	1 cut(s)	1346
EcoT38I	GRGCYC	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	1346
FaeI	CATG	8 cut(s)	287, 595, 752, 1004, 1130, 1172, 1183, 1208
FaqI	GGGAC	4 cut(s)	147, 375, 858, 1112
FatI	CATG	8 cut(s)	283, 591, 748, 1000, 1126, 1168, 1179, 1204
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	117, 963
FokI	GGATG	2 cut(s)	751, 1277
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	2 cut(s)	117, 963
FspBI	CTAG	3 cut(s)	141, 744, 1331
GluI	GCNGC	2 cut(s)	117, 963
GsaI	CCCAGC	2 cut(s)	148, 175
GsuI	CTGGAG	2 cut(s)	1054, 1237
Hin1II	CATG	8 cut(s)	287, 595, 752, 1004, 1130, 1172, 1183, 1208
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	2 cut(s)	515, 911
HinfI	GANTC	3 cut(s)	548, 572, 1338
Hpy166II	GTNNAC	1 cut(s)	631
Hpy188I	TCNGA	7 cut(s)	450, 659, 823, 831, 1014, 1117, 1193
Hpy188III	TCNNGA	5 cut(s)	102, 592, 1138, 1238, 1331
Hpy8I	GTNNAC	1 cut(s)	631
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	6 cut(s)	130, 567, 697, 849, 1123, 1150
HpyCH4IV	ACGT	2 cut(s)	35, 332
HpyCH4V	TGCA	5 cut(s)	116, 327, 499, 1059, 1202
HpyF3I	CTNAG	2 cut(s)	309, 518
HpySE526I	ACGT	2 cut(s)	35, 332
Hsp92II	CATG	8 cut(s)	287, 595, 752, 1004, 1130, 1172, 1183, 1208
Kzo9I	GATC	4 cut(s)	654, 710, 981, 1039
LmnI	GCTCC	4 cut(s)	66, 400, 757, 1218
Lsp1109I	GCAGC	2 cut(s)	128, 974
LweI	GCATC	3 cut(s)	249, 729, 1189
MaeI	CTAG	3 cut(s)	141, 744, 1331
MaeII	ACGT	2 cut(s)	35, 332
MaeIII	GTNAC	4 cut(s)	573, 1063, 1171, 1211
MalI	GATC	4 cut(s)	656, 712, 983, 1041
MboI	GATC	4 cut(s)	654, 710, 981, 1039
MboII	GAAGA	4 cut(s)	444, 625, 1157, 1250
MfeI	CAATTG	1 cut(s)	412
MhlI	GDGCHC	2 cut(s)	71, 1026
MluCI	AATT	7 cut(s)	361, 412, 472, 579, 688, 817, 924
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	5 cut(s)	149, 716, 762, 877, 1067
MnlI	CCTC	9 cut(s)	515, 598, 753, 967, 1036, 1085, 1123, 1304, 1327
MseI	TTAA	3 cut(s)	492, 816, 1308
MslI	CAYNNNNRTG	3 cut(s)	288, 1035, 1356
MspR9I	CCNGG	4 cut(s)	722, 861, 893, 1263
MunI	CAATTG	1 cut(s)	412
Mva1269I	GAATGC	1 cut(s)	1351
MvaI	CCWGG	4 cut(s)	722, 861, 893, 1263
MvnI	CGCG	2 cut(s)	154, 181
NdeII	GATC	4 cut(s)	654, 710, 981, 1039
NlaIII	CATG	8 cut(s)	287, 595, 752, 1004, 1130, 1172, 1183, 1208
NlaIV	GGNNCC	2 cut(s)	303, 858
NmuCI	GTSAC	3 cut(s)	573, 1063, 1171
NspI	RCATGY	2 cut(s)	752, 1208
OliI	CACNNNNGTG	1 cut(s)	1035
PagI	TCATGA	1 cut(s)	591
PciI	ACATGT	1 cut(s)	1204
PctI	GAATGC	1 cut(s)	1351
PfeI	GAWTC	2 cut(s)	548, 1338
PflFI	GACNNNGTC	1 cut(s)	34
PfoI	TCCNGGA	2 cut(s)	859, 1261
PkrI	GCNGC	2 cut(s)	118, 964
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PscI	ACATGT	1 cut(s)	1204
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	4 cut(s)	720, 859, 891, 1261
PspFI	CCCAGC	2 cut(s)	144, 171
PspGI	CCWGG	4 cut(s)	720, 859, 891, 1261
PspN4I	GGNNCC	2 cut(s)	303, 858
PstI	CTGCAG	1 cut(s)	118
PstNI	CAGNNNCTG	2 cut(s)	1121, 1154
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	3 cut(s)	88, 374, 1125
RsaNI	GTAC	3 cut(s)	87, 373, 1124
RseI	CAYNNNNRTG	3 cut(s)	288, 1035, 1356
SaqAI	TTAA	3 cut(s)	492, 816, 1308
SatI	GCNGC	2 cut(s)	117, 963
Sau3AI	GATC	4 cut(s)	654, 710, 981, 1039
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	4 cut(s)	722, 861, 893, 1263
SduI	GDGCHC	2 cut(s)	71, 1026
SfaNI	GCATC	3 cut(s)	249, 729, 1189
SfcI	CTRYAG	3 cut(s)	114, 381, 1155
SmiMI	CAYNNNNRTG	3 cut(s)	288, 1035, 1356
Sse9I	AATT	7 cut(s)	361, 412, 472, 579, 688, 817, 924
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	3 cut(s)	141, 744, 1331
StyD4I	CCNGG	4 cut(s)	720, 859, 891, 1261
StyI	CCWWGG	1 cut(s)	1346
TaaI	ACNGT	6 cut(s)	130, 567, 697, 849, 1123, 1150
TaiI	ACGT	2 cut(s)	38, 335
TaqI	TCGA	6 cut(s)	314, 430, 699, 709, 1083, 1341
TasI	AATT	7 cut(s)	361, 412, 472, 579, 688, 817, 924
TatI	WGTACW	3 cut(s)	86, 372, 1123
TfiI	GAWTC	2 cut(s)	548, 1338
Tru1I	TTAA	3 cut(s)	492, 816, 1308
Tru9I	TTAA	3 cut(s)	492, 816, 1308
TscAI	CASTG	7 cut(s)	572, 815, 854, 954, 1037, 1126, 1256
TseFI	GTSAC	3 cut(s)	573, 1063, 1171
TseI	GCWGC	2 cut(s)	116, 962
Tsp45I	GTSAC	3 cut(s)	573, 1063, 1171
TspDTI	ATGAA	5 cut(s)	205, 272, 639, 1157, 1299
TspRI	CASTG	7 cut(s)	572, 815, 854, 954, 1037, 1126, 1256
Tth111I	GACNNNGTC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	816
XbaI	TCTAGA	1 cut(s)	1330
XceI	RCATGY	2 cut(s)	752, 1208
XspI	CTAG	3 cut(s)	141, 744, 1331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.