Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005082.1

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Reverse (-)

3821 .. 7160

Gene Structure 3340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005082.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atgagcaattcaagtaggactacgtcgttcagcccgactacatcattcaataggagcacatcattcaatagaagtacatcattcaaatcaagaaccccgactgtagcaagcccaaccgtcagtcaatctagctgggtgtcgcgggttactccatttagctgggtctcgcgttggtttcacacactcatagtgattttcacattcatttcgtttctcactgccgtttatgggggttatctatatgtgatgccaagtctcaacctgacttttcatggttatggtgctttggaacctgctcagtcgataagcagttgcaatatgtttgatggaagttgggttgttgatgataattacccattgtacaatgctacagagtgtccctttgtggagcaggggttcaattgtttggctaatggtcgaagagataaggattatctgaaatacaggtggaaacccaataattgtgatataccaagatttaatgtgcagagtatattggacaagcttagaggaaaaagagttgtttttgtgggggattctatgagtagaacacagtgggagtcactaatttgcttgctcatgactggggtggaggataagaagagtgtctacgaagtcaacgggaataagattaccaaacagatcagatatttgggtgctcacttcagttccttcaattttactgtcgagttctttcgatcagttttcctggttcaacagggttggatgcctagacatgttccaaagagggtcaagtctatactaaagttggacaagttagatgacattagcaatcagtggattaattcagatgttctgatattcaacacgggacagtggtgggttccaggaaaactctttgacacgggttgctatttccaggttggaaactcactaaagcttggaatgtcaattcctactgcctttagaacagcactggatacttgggcagcttgggttgaggaaaagatcgccactaacagaactcatgtcttttttcggacttttgagccctctcactggagtgatccaactcgtagattttgcaatgtgaccgatcaccccatgttagacaccagaggtagggacttaagcatattttcagacactgtacatgaggtggtcaagaatatgacagttcctgtagccgttcttcatgtgacttccatgtcatctttccgaagtgatgcacatgtcgatcaagaatctgttactaaagataatgatgcaaccccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

412

Amino Acids

47.19

Weight (kDa)

9.07

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1168
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	609
AccII	CGCG	2 cut(s)	142, 169
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	1022
AcuI	CTGAAG	1 cut(s)	649
AfaI	GTAC	3 cut(s)	76, 362, 1113
AfiI	CCNNNNNNNGG	3 cut(s)	228, 1020, 1083
AflII	CTTAAG	1 cut(s)	1090
AflIII	ACRYGT	2 cut(s)	736, 1192
AgsI	TTSAA	8 cut(s)	12, 49, 67, 85, 400, 676, 716, 826
AjnI	CCWGG	3 cut(s)	708, 847, 879
AleI	CACNNNNGTG	1 cut(s)	1023
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	5 cut(s)	132, 159, 505, 901, 953
AluI	AGCT	5 cut(s)	132, 159, 505, 901, 953
Alw21I	GWGCWC	2 cut(s)	59, 661
Alw26I	GTCTC	2 cut(s)	169, 260
AlwI	GGATC	1 cut(s)	1022
AlwNI	CAGNNNCTG	2 cut(s)	1109, 1142
ApeKI	GCWGC	1 cut(s)	950
AseI	ATTAAT	1 cut(s)	804
AsuHPI	GGTGA	1 cut(s)	1052
BanII	GRGCYC	1 cut(s)	1014
BarI	GAAGNNNNNNTAC	4 cut(s)	593, 625, 1137, 1169
Bbv12I	GWGCWC	2 cut(s)	59, 661
BbvI	GCAGC	1 cut(s)	962
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	2 cut(s)	206, 1133
BciT130I	CCWGG	3 cut(s)	710, 849, 881
BciVI	GTATCC	1 cut(s)	934
BcoDI	GTCTC	2 cut(s)	169, 260
BfaI	CTAG	2 cut(s)	129, 732
BfmI	CTRYAG	3 cut(s)	102, 369, 1143
BfrI	CTTAAG	1 cut(s)	1090
BfuAI	ACCTGC	1 cut(s)	301
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	3 cut(s)	710, 849, 881
BmiI	GGNNCC	2 cut(s)	291, 846
BmrFI	CCNGG	3 cut(s)	710, 849, 881
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	4 cut(s)	237, 717, 1177, 1216
BmuI	ACTGGG	1 cut(s)	594
BpmI	CTGGAG	1 cut(s)	1042
BsaI	GGTCTC	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	380, 410
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 1020, 1083
Bse1I	ACTGG	3 cut(s)	589, 942, 1025
Bse3DI	GCAATG	1 cut(s)	1054
BseBI	CCWGG	3 cut(s)	710, 849, 881
BseGI	GGATG	1 cut(s)	732
BseLI	CCNNNNNNNGG	3 cut(s)	228, 1020, 1083
BseMI	GCAATG	1 cut(s)	1054
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	589, 942, 1025
BseXI	GCAGC	1 cut(s)	962
BseYI	CCCAGC	2 cut(s)	132, 159
BsgI	GTGCAG	1 cut(s)	506
Bsh1236I	CGCG	2 cut(s)	142, 169
BsiHKAI	GWGCWC	2 cut(s)	59, 661
BslFI	GGGAC	3 cut(s)	363, 846, 1100
BslI	CCNNNNNNNGG	3 cut(s)	228, 1020, 1083
BsmAI	GTCTC	2 cut(s)	169, 260
BsmFI	GGGAC	3 cut(s)	363, 846, 1100
Bso31I	GGTCTC	1 cut(s)	169
Bsp1286I	GDGCHC	3 cut(s)	59, 661, 1014
Bsp1407I	TGTACA	2 cut(s)	360, 1111
Bsp143I	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	142, 169
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	2 cut(s)	291, 846
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	1022
BspTI	CTTAAG	1 cut(s)	1090
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	1054
BsrGI	TGTACA	2 cut(s)	360, 1111
BsrI	ACTGG	3 cut(s)	589, 942, 1025
BssMI	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
Bst2UI	CCWGG	3 cut(s)	710, 849, 881
Bst4CI	ACNGT	7 cut(s)	103, 118, 555, 685, 837, 1111, 1138
Bst6I	CTCTTC	2 cut(s)	415, 596
BstAFI	CTTAAG	1 cut(s)	1090
BstAUI	TGTACA	2 cut(s)	360, 1111
BstC8I	GCNNGC	2 cut(s)	109, 575
BstDEI	CTNAG	2 cut(s)	297, 506
BstF5I	GGATG	1 cut(s)	732
BstFNI	CGCG	2 cut(s)	142, 169
BstKTI	GATC	6 cut(s)	645, 701, 972, 1030, 1060, 1201
BstMAI	GTCTC	2 cut(s)	169, 260
BstMBI	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
BstNI	CCWGG	3 cut(s)	710, 849, 881
BstNSI	RCATGY	2 cut(s)	740, 1196
BstSCI	CCNGG	3 cut(s)	708, 847, 879
BstSFI	CTRYAG	3 cut(s)	102, 369, 1143
BstUI	CGCG	2 cut(s)	142, 169
BstV1I	GCAGC	1 cut(s)	962
BstXI	CCANNNNNNTGG	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	934
BtsCI	GGATG	1 cut(s)	732
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	7 cut(s)	216, 560, 803, 842, 935, 1018, 1107
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	2 cut(s)	109, 575
CaiI	CAGNNNCTG	2 cut(s)	1109, 1142
CciI	TCATGA	1 cut(s)	579
Csp6I	GTAC	3 cut(s)	75, 361, 1112
CviAII	CATG	9 cut(s)	272, 580, 737, 989, 1066, 1115, 1157, 1168, 1193
CviQI	GTAC	3 cut(s)	75, 361, 1112
DdeI	CTNAG	2 cut(s)	297, 506
DpnI	GATC	6 cut(s)	644, 700, 971, 1029, 1059, 1200
DpnII	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
DrdI	GACNNNNNNGTC	1 cut(s)	1168
DseDI	GACNNNNNNGTC	1 cut(s)	1168
Eam1104I	CTCTTC	2 cut(s)	415, 596
EarI	CTCTTC	2 cut(s)	415, 596
Eco24I	GRGCYC	1 cut(s)	1014
Eco31I	GGTCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	649
EcoRII	CCWGG	3 cut(s)	708, 847, 879
EcoT38I	GRGCYC	1 cut(s)	1014
FaeI	CATG	9 cut(s)	275, 583, 740, 992, 1069, 1118, 1160, 1171, 1196
FaqI	GGGAC	3 cut(s)	363, 846, 1100
FatI	CATG	9 cut(s)	271, 579, 736, 988, 1065, 1114, 1156, 1167, 1192
FauI	CCCGC	1 cut(s)	135
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	1 cut(s)	739
FriOI	GRGCYC	1 cut(s)	1014
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	2 cut(s)	129, 732
GluI	GCNGC	1 cut(s)	951
GsaI	CCCAGC	2 cut(s)	136, 163
GsuI	CTGGAG	1 cut(s)	1042
Hin1II	CATG	9 cut(s)	275, 583, 740, 992, 1069, 1118, 1160, 1171, 1196
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	503, 899
HinfI	GANTC	3 cut(s)	536, 560, 1205
HphI	GGTGA	1 cut(s)	1052
Hpy166II	GTNNAC	2 cut(s)	610, 619
Hpy188I	TCNGA	7 cut(s)	438, 647, 811, 819, 1002, 1105, 1181
Hpy188III	TCNNGA	4 cut(s)	90, 580, 1126, 1202
Hpy8I	GTNNAC	2 cut(s)	610, 619
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	682
HpyCH4III	ACNGT	7 cut(s)	103, 118, 555, 685, 837, 1111, 1138
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	315, 487, 1047, 1190, 1229
HpyF3I	CTNAG	2 cut(s)	297, 506
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	9 cut(s)	275, 583, 740, 992, 1069, 1118, 1160, 1171, 1196
Kzo9I	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
LmnI	GCTCC	2 cut(s)	54, 388
Lsp1109I	GCAGC	1 cut(s)	962
LweI	GCATC	4 cut(s)	237, 717, 1177, 1216
MaeI	CTAG	2 cut(s)	129, 732
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	5 cut(s)	145, 561, 1051, 1159, 1210
MalI	GATC	6 cut(s)	644, 700, 971, 1029, 1059, 1200
MboI	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
MboII	GAAGA	3 cut(s)	432, 613, 1145
MfeI	CAATTG	1 cut(s)	400
MhlI	GDGCHC	3 cut(s)	59, 661, 1014
MluCI	AATT	8 cut(s)	7, 349, 400, 460, 567, 676, 805, 912
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	4 cut(s)	704, 750, 865, 1055
MnlI	CCTC	7 cut(s)	503, 586, 741, 955, 1024, 1073, 1111
MseI	TTAA	3 cut(s)	480, 804, 1091
MslI	CAYNNNNRTG	2 cut(s)	276, 1023
MspCI	CTTAAG	1 cut(s)	1090
MspR9I	CCNGG	3 cut(s)	710, 849, 881
MunI	CAATTG	1 cut(s)	400
MvaI	CCWGG	3 cut(s)	710, 849, 881
MvnI	CGCG	2 cut(s)	142, 169
NdeII	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
NlaIII	CATG	9 cut(s)	275, 583, 740, 992, 1069, 1118, 1160, 1171, 1196
NlaIV	GGNNCC	2 cut(s)	291, 846
NmuCI	GTSAC	3 cut(s)	561, 1051, 1159
NspI	RCATGY	2 cut(s)	740, 1196
OliI	CACNNNNGTG	1 cut(s)	1023
PagI	TCATGA	1 cut(s)	579
PciI	ACATGT	2 cut(s)	736, 1192
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	536, 1205
PflFI	GACNNNGTC	1 cut(s)	22
PfoI	TCCNGGA	1 cut(s)	847
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	2 cut(s)	736, 1192
PshBI	ATTAAT	1 cut(s)	804
Psp6I	CCWGG	3 cut(s)	708, 847, 879
PspFI	CCCAGC	2 cut(s)	132, 159
PspGI	CCWGG	3 cut(s)	708, 847, 879
PspN4I	GGNNCC	2 cut(s)	291, 846
PstNI	CAGNNNCTG	2 cut(s)	1109, 1142
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	76, 362, 1113
RsaNI	GTAC	3 cut(s)	75, 361, 1112
RseI	CAYNNNNRTG	2 cut(s)	276, 1023
SaqAI	TTAA	3 cut(s)	480, 804, 1091
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	6 cut(s)	642, 698, 969, 1027, 1057, 1198
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	3 cut(s)	710, 849, 881
SduI	GDGCHC	3 cut(s)	59, 661, 1014
SfaNI	GCATC	4 cut(s)	237, 717, 1177, 1216
SfcI	CTRYAG	3 cut(s)	102, 369, 1143
SmiMI	CAYNNNNRTG	2 cut(s)	276, 1023
SmlI	CTYRAG	1 cut(s)	1090
SmoI	CTYRAG	1 cut(s)	1090
Sse9I	AATT	8 cut(s)	7, 349, 400, 460, 567, 676, 805, 912
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	2 cut(s)	129, 732
StyD4I	CCNGG	3 cut(s)	708, 847, 879
TaaI	ACNGT	7 cut(s)	103, 118, 555, 685, 837, 1111, 1138
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	5 cut(s)	302, 418, 687, 697, 1197
TaqII	GACCGA	1 cut(s)	1070
TasI	AATT	8 cut(s)	7, 349, 400, 460, 567, 676, 805, 912
TatI	WGTACW	3 cut(s)	74, 360, 1111
TfiI	GAWTC	2 cut(s)	536, 1205
Tru1I	TTAA	3 cut(s)	480, 804, 1091
Tru9I	TTAA	3 cut(s)	480, 804, 1091
TscAI	CASTG	7 cut(s)	223, 560, 803, 842, 942, 1025, 1114
TseFI	GTSAC	3 cut(s)	561, 1051, 1159
TseI	GCWGC	1 cut(s)	950
Tsp45I	GTSAC	3 cut(s)	561, 1051, 1159
TspDTI	ATGAA	3 cut(s)	193, 260, 1145
TspRI	CASTG	7 cut(s)	223, 560, 803, 842, 942, 1025, 1114
Tth111I	GACNNNGTC	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	1090
VspI	ATTAAT	1 cut(s)	804
XceI	RCATGY	2 cut(s)	740, 1196
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	2 cut(s)	129, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.