Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Reverse (-)

1754190 .. 1758273

Gene Structure 4084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G018900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGATGGAGATAGTGAGAAACGTTAATTTGGACTTGTTTGTTCAATTCAGGATTTTCTACAAAAGGGTTTTGAATTTTGGTAATGAGATGATGAGGGGTCATGGTAAAATCTGGGGTTTTCAAACAATCAATGGACTAGTTGCAATTGGCTCATTGGTGTCCTTTGTTGTTGCCATGTCATGTGCATTTTTGTATTTGTTTCCCAGGGTTCCCCCAGTGGTTCATAGCTATGGAATTTCTAATTCCACTACTTCTGTTGAAAAATGTAATGTTTTTGAAGGAAGATGGATTCCAGATGAAAGTTACCCTTTGTACAATGCCTCACAATGTCCATTTGCAGAAATTGGATTTAATTGCTTGGCTAATGGGCGGAAAGATAAGGGTTATGCTAAATGGAGGTGGAAGCCAAAGAATTGTGATATTCCTAGGTTTGATGTGCGTGCAGTTCTTGAAACACTTCGTGGGAAACGGATTGTTTTTGTTGGTGACTCTTTAGGTAGAACACAGTGGGAATCTTTGATATGTTTACTCATGACAGGGGTGGAGGATAAGACGAGTGTTTATGAAGTGAATGGGAATAAAATCACTAAGCGGATTAGATTTTTAGCCGTTCGGTTTAGTTCGTTTGATCTCAGAATTGACTTTTATCGGTCAGTTTTCCTAGTGCAGCCGGCTTCAGCTCCAAACCGAGCACCAAAGAGGGTTAAGTCAACGCTCAGAGTTGACAAATTGGATGAAATTAGCAAAGAATGGATTGATTCTGATATTTTGGTTTTCAATTCAGGGCACTGGTGGACACCAAGTAAACTTTTTGAAATGGGCTGCTATTTTCAAGAGGGTAAATCACTGAAGCTTGGAATGCCAATCACCACTGCCTTCAAGACAGCTTTAAACACTTGGTCATCTTGGGCTGAGACAATGATCAATACAAACAGAACAAGTGTATTTTTCAGGAGTTTTGAGACATCCCATTGGAGTGGCCGTAACCATAATTCATGCAAAGTAACTCGACATCCTTTGTCAAGCCCTAAGGGAAGGGACCAAAGCTCAATTTCAAACATCATTATCAAGATTGTGAGGAAAATGACCGTCCCTGTAACTGTTCTGCATGTTACACCTATGGTAGCATTCCGAAGTGATGGCCATGTGGGTACTTGGAGCGATAATCCATCAGTGCCTGATTGTAGCCATTGGTGCCTACCTGGTGTACCTGATATGTGGAATGAAATTCTCTTGTCATATCTGCTACCCGGGAATGATGTTTCCCTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

425

Amino Acids

48.41

Weight (kDa)

9.45

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1194
AciI	CCGC	2 cut(s)	370, 592
AclI	AACGTT	1 cut(s)	21
AcoI	YGGCCR	2 cut(s)	979, 1141
AcsI	RAATTY	3 cut(s)	73, 234, 1227
AcuI	CTGAAG	2 cut(s)	660, 869
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	3 cut(s)	314, 1153, 1209
AhlI	ACTAGT	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	203, 1201
AluBI	AGCT	5 cut(s)	228, 680, 853, 887, 1047
AluI	AGCT	5 cut(s)	228, 680, 853, 887, 1047
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	2 cut(s)	908, 956
AlwNI	CAGNNNCTG	1 cut(s)	1178
Ama87I	CYCGRG	1 cut(s)	1250
AoxI	GGCC	2 cut(s)	979, 1141
ApeKI	GCWGC	2 cut(s)	667, 822
ApoI	RAATTY	3 cut(s)	73, 234, 1227
Asp700I	GAANNNNTTC	1 cut(s)	456
AspA2I	CCTAGG	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	1039
AsuC2I	CCSGG	2 cut(s)	1251, 1252
AsuHPI	GGTGA	2 cut(s)	497, 859
AvaI	CYCGRG	1 cut(s)	1250
AvaII	GGWCC	1 cut(s)	1039
AvrII	CCTAGG	1 cut(s)	425
AxyI	CCTNAGG	1 cut(s)	1029
BaeGI	GKGCMC	1 cut(s)	789
BalI	TGGCCA	1 cut(s)	1143
BanI	GGYRCC	1 cut(s)	1194
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	2 cut(s)	679, 809
BccI	CCATC	3 cut(s)	279, 1133, 1177
BceAI	ACGGC	2 cut(s)	593, 966
BciT130I	CCWGG	2 cut(s)	205, 1203
BclI	TGATCA	1 cut(s)	921
BcnI	CCSGG	2 cut(s)	1251, 1252
BcoDI	GTCTC	2 cut(s)	908, 956
BcuI	ACTAGT	1 cut(s)	136
BfaI	CTAG	3 cut(s)	137, 426, 662
BisI	GCNGC	2 cut(s)	668, 823
BlnI	CCTAGG	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	669, 824
Bme1390I	CCNGG	4 cut(s)	205, 1203, 1251, 1252
Bme18I	GGWCC	1 cut(s)	1039
BmeT110I	CYCGRG	1 cut(s)	1250
BmgT120I	GGNCC	1 cut(s)	1039
BmiI	GGNNCC	3 cut(s)	210, 1040, 1196
BmrFI	CCNGG	4 cut(s)	205, 1203, 1251, 1252
BmrI	ACTGGG	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	209
BpuMI	CCSGG	2 cut(s)	1251, 1252
BsaJI	CCNNGG	4 cut(s)	203, 204, 425, 1250
BsaXI	ACNNNNNCTCC	2 cut(s)	967, 997
Bse118I	RCCGGY	1 cut(s)	670
Bse1I	ACTGG	2 cut(s)	215, 794
Bse21I	CCTNAGG	1 cut(s)	1029
BseBI	CCWGG	2 cut(s)	205, 1203
BseDI	CCNNGG	4 cut(s)	203, 204, 425, 1250
BseGI	GGATG	3 cut(s)	739, 965, 1012
BseMII	CTCAG	3 cut(s)	646, 730, 903
BseNI	ACTGG	2 cut(s)	215, 794
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	2 cut(s)	679, 809
BsgI	GTGCAG	2 cut(s)	462, 686
BshFI	GGCC	2 cut(s)	981, 1143
BshNI	GGYRCC	1 cut(s)	1194
BsiHKAI	GWGCWC	1 cut(s)	694
BsiHKCI	CYCGRG	1 cut(s)	1250
BsiSI	CCGG	2 cut(s)	671, 1251
BslFI	GGGAC	2 cut(s)	1052, 1076
BsmAI	GTCTC	2 cut(s)	908, 956
BsmFI	GGGAC	2 cut(s)	1052, 1076
BsmI	GAATGC	2 cut(s)	864, 1127
BsnI	GGCC	2 cut(s)	981, 1143
BsoBI	CYCGRG	1 cut(s)	1250
Bsp1286I	GDGCHC	2 cut(s)	694, 789
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	628, 921
BspACI	CCGC	2 cut(s)	370, 592
BspANI	GGCC	2 cut(s)	981, 1143
BspCNI	CTCAG	3 cut(s)	645, 729, 904
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	210, 1040, 1196
BspT107I	GGYRCC	1 cut(s)	1194
BsrFI	RCCGGY	1 cut(s)	670
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	215, 794
BssAI	RCCGGY	1 cut(s)	670
BssECI	CCNNGG	4 cut(s)	203, 204, 425, 1250
BssMI	GATC	2 cut(s)	628, 921
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	2 cut(s)	205, 1203
Bst4CI	ACNGT	3 cut(s)	507, 1090, 1102
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	441, 672
BstDEI	CTNAG	5 cut(s)	588, 632, 716, 912, 1029
BstF5I	GGATG	3 cut(s)	739, 965, 1012
BstKTI	GATC	2 cut(s)	631, 924
BstMAI	GTCTC	2 cut(s)	908, 956
BstMBI	GATC	2 cut(s)	628, 921
BstMWI	GCNNNNNNNGC	2 cut(s)	859, 1194
BstNI	CCWGG	2 cut(s)	205, 1203
BstNSI	RCATGY	1 cut(s)	1112
BstSCI	CCNGG	4 cut(s)	203, 1201, 1249, 1250
BstSLI	GKGCMC	1 cut(s)	789
BstV1I	GCAGC	2 cut(s)	679, 809
BstXI	CCANNNNNNTGG	1 cut(s)	977
Bsu36I	CCTNAGG	1 cut(s)	1029
BsuRI	GGCC	2 cut(s)	981, 1143
BtsCI	GGATG	3 cut(s)	739, 965, 1012
BtsI	GCAGTG	1 cut(s)	870
BtsIMutI	CAGTG	6 cut(s)	222, 512, 787, 845, 870, 1179
Cac8I	GCNNGC	2 cut(s)	441, 672
CaiI	CAGNNNCTG	1 cut(s)	1178
CciI	TCATGA	1 cut(s)	531
Cfr10I	RCCGGY	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	1039
Cfr9I	CCCGGG	1 cut(s)	1250
CsiI	ACCWGGT	1 cut(s)	1201
Csp6I	GTAC	3 cut(s)	313, 1152, 1208
CviAII	CATG	7 cut(s)	101, 175, 180, 532, 996, 1109, 1145
CviQI	GTAC	3 cut(s)	313, 1152, 1208
DdeI	CTNAG	5 cut(s)	588, 632, 716, 912, 1029
DpnI	GATC	2 cut(s)	630, 923
DpnII	GATC	2 cut(s)	628, 921
DraI	TTTAAA	1 cut(s)	891
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	2 cut(s)	979, 1141
EciI	GGCGGA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	1039
Eco57I	CTGAAG	2 cut(s)	660, 869
Eco81I	CCTNAGG	1 cut(s)	1029
Eco88I	CYCGRG	1 cut(s)	1250
EcoRII	CCWGG	2 cut(s)	203, 1201
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	7 cut(s)	104, 178, 183, 535, 999, 1112, 1148
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	2 cut(s)	1052, 1076
FatI	CATG	7 cut(s)	100, 174, 179, 531, 995, 1108, 1144
FbaI	TGATCA	1 cut(s)	921
Fnu4HI	GCNGC	2 cut(s)	668, 823
FokI	GGATG	3 cut(s)	746, 952, 999
Fsp4HI	GCNGC	2 cut(s)	668, 823
FspBI	CTAG	3 cut(s)	137, 426, 662
GluI	GCNGC	2 cut(s)	668, 823
HaeIII	GGCC	2 cut(s)	981, 1143
HapII	CCGG	2 cut(s)	671, 1251
Hin1II	CATG	7 cut(s)	104, 178, 183, 535, 999, 1112, 1148
HincII	GTYRAC	2 cut(s)	711, 724
HindII	GTYRAC	2 cut(s)	711, 724
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	4 cut(s)	289, 488, 512, 758
HpaII	CCGG	2 cut(s)	671, 1251
HphI	GGTGA	2 cut(s)	497, 859
Hpy166II	GTNNAC	6 cut(s)	527, 711, 724, 795, 806, 1208
Hpy188I	TCNGA	4 cut(s)	635, 719, 763, 1133
Hpy188III	TCNNGA	8 cut(s)	49, 293, 449, 532, 833, 880, 952, 1069
Hpy8I	GTNNAC	6 cut(s)	527, 711, 724, 795, 806, 1208
HpyAV	CCTTC	3 cut(s)	272, 886, 1029
HpyCH4III	ACNGT	3 cut(s)	507, 1090, 1102
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	7 cut(s)	143, 185, 338, 443, 667, 999, 1108
HpyF10VI	GCNNNNNNNGC	2 cut(s)	859, 1194
HpyF3I	CTNAG	5 cut(s)	588, 632, 716, 912, 1029
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	104, 178, 183, 535, 999, 1112, 1148
KroI	GCCGGC	1 cut(s)	670
KroNI	GCCGGC	1 cut(s)	672
Ksp22I	TGATCA	1 cut(s)	921
Kzo9I	GATC	2 cut(s)	628, 921
LmnI	GCTCC	2 cut(s)	685, 1158
Lsp1109I	GCAGC	2 cut(s)	679, 809
MabI	ACCWGGT	1 cut(s)	1201
MaeI	CTAG	3 cut(s)	137, 426, 662
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	6 cut(s)	302, 485, 983, 1003, 1096, 1111
MalI	GATC	2 cut(s)	630, 923
MboI	GATC	2 cut(s)	628, 921
MboII	GAAGA	1 cut(s)	294
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	2 cut(s)	694, 789
MlsI	TGGCCA	1 cut(s)	1143
MluNI	TGGCCA	1 cut(s)	1143
MlyI	GAGTC	1 cut(s)	482
MnlI	CCTC	7 cut(s)	87, 331, 390, 538, 693, 829, 1071
Mox20I	TGGCCA	1 cut(s)	1143
MroNI	GCCGGC	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	456
MscI	TGGCCA	1 cut(s)	1143
MseI	TTAA	4 cut(s)	24, 351, 705, 890
MslI	CAYNNNNRTG	2 cut(s)	228, 975
Msp20I	TGGCCA	1 cut(s)	1143
MspI	CCGG	2 cut(s)	671, 1251
MspR9I	CCNGG	4 cut(s)	205, 1203, 1251, 1252
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	2 cut(s)	864, 1127
MvaI	CCWGG	2 cut(s)	205, 1203
MwoI	GCNNNNNNNGC	2 cut(s)	859, 1194
NaeI	GCCGGC	1 cut(s)	672
NciI	CCSGG	2 cut(s)	1251, 1252
NdeII	GATC	2 cut(s)	628, 921
NgoMIV	GCCGGC	1 cut(s)	670
NlaIII	CATG	7 cut(s)	104, 178, 183, 535, 999, 1112, 1148
NlaIV	GGNNCC	3 cut(s)	210, 1040, 1196
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	1112
PagI	TCATGA	1 cut(s)	531
PasI	CCCWGGG	1 cut(s)	204
PctI	GAATGC	2 cut(s)	864, 1127
PdiI	GCCGGC	1 cut(s)	672
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	3 cut(s)	289, 512, 758
PkrI	GCNGC	2 cut(s)	669, 824
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Psp1406I	AACGTT	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	203, 1201
PspGI	CCWGG	2 cut(s)	203, 1201
PspN4I	GGNNCC	3 cut(s)	210, 1040, 1196
PspPI	GGNCC	1 cut(s)	1039
PstNI	CAGNNNCTG	1 cut(s)	1178
RsaI	GTAC	3 cut(s)	314, 1153, 1209
RsaNI	GTAC	3 cut(s)	313, 1152, 1208
RseI	CAYNNNNRTG	2 cut(s)	228, 975
SaqAI	TTAA	4 cut(s)	24, 351, 705, 890
SatI	GCNGC	2 cut(s)	668, 823
Sau3AI	GATC	2 cut(s)	628, 921
Sau96I	GGNCC	1 cut(s)	1039
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	4 cut(s)	205, 1203, 1251, 1252
SduI	GDGCHC	2 cut(s)	694, 789
SexAI	ACCWGGT	1 cut(s)	1201
SinI	GGWCC	1 cut(s)	1039
SmaI	CCCGGG	1 cut(s)	1252
SmiMI	CAYNNNNRTG	2 cut(s)	228, 975
SpeI	ACTAGT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	370, 592
SspMI	CTAG	3 cut(s)	137, 426, 662
StyD4I	CCNGG	4 cut(s)	203, 1201, 1249, 1250
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	3 cut(s)	507, 1090, 1102
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	1009
TaqII	GACCGA	1 cut(s)	639
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	3 cut(s)	289, 512, 758
Tru1I	TTAA	4 cut(s)	24, 351, 705, 890
Tru9I	TTAA	4 cut(s)	24, 351, 705, 890
TscAI	CASTG	6 cut(s)	222, 512, 794, 852, 877, 1179
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	667, 822
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	6 cut(s)	212, 312, 579, 750, 984, 1239
TspGWI	ACGGA	1 cut(s)	484
TspMI	CCCGGG	1 cut(s)	1250
TspRI	CASTG	6 cut(s)	222, 512, 794, 852, 877, 1179
VpaK11BI	GGWCC	1 cut(s)	1039
XapI	RAATTY	3 cut(s)	73, 234, 1227
XceI	RCATGY	1 cut(s)	1112
XmaI	CCCGGG	1 cut(s)	1250
XmaJI	CCTAGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	3 cut(s)	137, 426, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.