Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Reverse (-)

32208626 .. 32212763

Gene Structure 4138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAGATGGTGAGGAATGTTTATTGGGACTCGTTTGCCCAATTCAGGTCTTTCTACAAACGGGTTTTGAATTTTGGCAATGAGATGATGAAGGGTTATTGGAAAGTTTGGATCTTTCAAACTTTCCATGGGCTAGTTGCAATTGGTTCATTGGTGTCCTTTATTTTAGCCATGGCATTTGCATATATGTATTTGTTTCCCACTGTTCCCCCAGTAGTTCGAAGTTACGGAATTTCGAATTCCAGTAGTTCTAGTTCAAGTAGTTCTGTAGAGAAGTGCAATGTTTATGAAGGAAGCTGGATTGCAGATGAAAGTTACCCTTTGTACAATGCATCACTGTGTCCATTTGCAGAACGTGGATTTAATTGCTTGGCTAATGGAAGGGAAGATAGGGGTTATGCCAAGTGGAGGTGGAAGCCTAAGAATTGTGATATTCCAAGATTCGATGCGCGTAAAGTTCTTGAAGGGCTTCGTGGAAAACGAGTTGTTTTTGTGGGTGACTCACTAAGTAGAACACAGTGGGAGTCTTTGATATGTTTACTCATGACAGGGGTGGAGGATAAGAAGAGTGTTTATGAAGTGAATGGGAATAAAATCACCAAGCAGATTAGATTTTTATCGGTACGGTTTACAACATTTGATCTCAGAATGGACTTTTACCGGTCAGTTTTCCTAGTGCAGCGTGCTTCAAAGCCAGCGCGAGCACCAAAGAGGGTTAAGTCGACACTCAGAATCGACAGGATAGATGACATTAGCAAAGAATGGATTGATTCAGATATTTTGATCTTCAATTCAGGGCACTGGTGGACACCGAGTAAACTTTTTGAACTTTTCAACTTATATCTGTACCTAAAAGGTGGTTTTAAAGGCATATGCATGTTGCCTAATATTGATAAGCTGGTTGGTAAATCACTGAAGCTTGGAATGCCGATCACCACTGCCTTCAAAAAAGCTATGAACACTTGGGCATCTTGGGTTGAGACCTCAATCAACACAAATAGAACAAGTGTCTTCATCAGGACTTTTGAGTCATCACATTGGAGTGGCCGACACCGTCATTCTTGCAAAGTGGGTCAACGCCCATGGTTAAGCTCCTGGGGAATGGACCGAAGCCCAGTTTCAGACACCATTATAAAGGTTGTGAGGAAAATGGCAGTTCCTGTAACAATTATGCATGTTACACCTATGGGAGCATTCCGAAGTGATGGTCATGTGGGTATTTGGAGTGATAATCCATCTGTGCCTGATTGTAGCCATTGGTGCCTACCTGGCGTACCTGATATGTGGAATGAAATTCTCTTGTCATATCTGCTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

439

Amino Acids

50.55

Weight (kDa)

9.62

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	91 - 144	7.6e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 435	1.6e-79	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1133
AasI	GACNNNNNNGTC	1 cut(s)	1027
AccB1I	GGYRCC	1 cut(s)	1260
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	2 cut(s)	451, 700
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	1045
AcsI	RAATTY	4 cut(s)	70, 231, 238, 1293
AcuI	CTGAAG	1 cut(s)	935
AfaI	GTAC	4 cut(s)	326, 624, 848, 1275
AfiI	CCNNNNNNNGG	2 cut(s)	45, 408
AgeI	ACCGGT	1 cut(s)	660
AgsI	TTSAA	9 cut(s)	70, 119, 258, 464, 690, 790, 827, 835, 946
AjnI	CCWGG	2 cut(s)	1094, 1267
AluBI	AGCT	5 cut(s)	297, 898, 919, 953, 1092
AluI	AGCT	5 cut(s)	297, 898, 919, 953, 1092
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	974
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	1160
AoxI	GGCC	1 cut(s)	1045
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	4 cut(s)	70, 231, 238, 1293
ArsI	GACNNNNNNTTYG	2 cut(s)	1192, 1224
AsiGI	ACCGGT	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	451, 700
AspS9I	GGNCC	1 cut(s)	1105
AsuHPI	GGTGA	4 cut(s)	22, 509, 589, 925
AsuII	TTCGAA	2 cut(s)	220, 236
AvaII	GGWCC	1 cut(s)	1105
BaeGI	GKGCMC	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	1260
BbsI	GAAGAC	1 cut(s)	1003
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	1 cut(s)	691
BccI	CCATC	2 cut(s)	1199, 1243
BciT130I	CCWGG	2 cut(s)	1096, 1269
BcoDI	GTCTC	1 cut(s)	974
BfaI	CTAG	3 cut(s)	134, 252, 674
BfmI	CTRYAG	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	1269
BisI	GCNGC	1 cut(s)	680
BlsI	GCNGC	1 cut(s)	681
Bme1390I	CCNGG	2 cut(s)	1096, 1269
Bme18I	GGWCC	1 cut(s)	1105
BmgT120I	GGNCC	1 cut(s)	1105
BmiI	GGNNCC	1 cut(s)	1262
BmrFI	CCNGG	2 cut(s)	1096, 1269
BmrI	ACTGGG	2 cut(s)	206, 1109
BmsI	GCATC	3 cut(s)	341, 436, 977
BmuI	ACTGGG	2 cut(s)	206, 1109
BpiI	GAAGAC	1 cut(s)	1003
Bpu14I	TTCGAA	2 cut(s)	220, 236
BsaBI	GATNNNNATC	1 cut(s)	616
BsaI	GGTCTC	1 cut(s)	974
BsaJI	CCNNGG	4 cut(s)	127, 171, 1082, 1095
BsaWI	WCCGGW	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 408
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	4 cut(s)	212, 243, 806, 1115
Bse3DI	GCAATG	2 cut(s)	85, 286
Bse8I	GATNNNNATC	1 cut(s)	616
BseBI	CCWGG	2 cut(s)	1096, 1269
BseDI	CCNNGG	4 cut(s)	127, 171, 1082, 1095
BseJI	GATNNNNATC	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	45, 408
BseMI	GCAATG	2 cut(s)	85, 286
BseMII	CTCAG	2 cut(s)	658, 742
BseNI	ACTGG	4 cut(s)	212, 243, 806, 1115
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	1 cut(s)	691
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	451, 700
BshFI	GGCC	1 cut(s)	1047
BshNI	GGYRCC	1 cut(s)	1260
BshTI	ACCGGT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	45, 408
BsmAI	GTCTC	1 cut(s)	974
BsmFI	GGGAC	1 cut(s)	41
BsmI	GAATGC	2 cut(s)	930, 1193
BsnI	GGCC	1 cut(s)	1047
Bso31I	GGTCTC	1 cut(s)	974
Bsp119I	TTCGAA	2 cut(s)	220, 236
Bsp1286I	GDGCHC	2 cut(s)	706, 801
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	111, 640, 783, 930
Bsp19I	CCATGG	3 cut(s)	127, 171, 1082
BspANI	GGCC	1 cut(s)	1047
BspCNI	CTCAG	2 cut(s)	657, 741
BspFNI	CGCG	2 cut(s)	451, 700
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	1262
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	2 cut(s)	220, 236
BspT107I	GGYRCC	1 cut(s)	1260
BspTNI	GGTCTC	1 cut(s)	974
BsrDI	GCAATG	2 cut(s)	85, 286
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	4 cut(s)	212, 243, 806, 1115
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	4 cut(s)	127, 171, 1082, 1095
BssMI	GATC	4 cut(s)	111, 640, 783, 930
BssT1I	CCWWGG	3 cut(s)	127, 171, 1082
Bst2UI	CCWGG	2 cut(s)	1096, 1269
Bst4CI	ACNGT	5 cut(s)	205, 339, 519, 627, 1055
Bst6I	CTCTTC	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	2 cut(s)	220, 236
BstC8I	GCNNGC	3 cut(s)	684, 696, 702
BstDEI	CTNAG	4 cut(s)	420, 506, 644, 728
BstDSI	CCRYGG	3 cut(s)	127, 171, 1082
BstFNI	CGCG	2 cut(s)	451, 700
BstHHI	GCGC	2 cut(s)	451, 700
BstKTI	GATC	4 cut(s)	114, 643, 786, 933
BstMAI	GTCTC	1 cut(s)	974
BstMBI	GATC	4 cut(s)	111, 640, 783, 930
BstMWI	GCNNNNNNNGC	3 cut(s)	925, 1260, 1269
BstNI	CCWGG	2 cut(s)	1096, 1269
BstNSI	RCATGY	2 cut(s)	880, 1178
BstSCI	CCNGG	2 cut(s)	1094, 1267
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	2 cut(s)	451, 700
BstV1I	GCAGC	1 cut(s)	691
BstV2I	GAAGAC	1 cut(s)	1003
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	1047
BtgI	CCRYGG	3 cut(s)	127, 171, 1082
BtsI	GCAGTG	1 cut(s)	936
BtsIMutI	CAGTG	6 cut(s)	201, 335, 524, 799, 911, 936
Cac8I	GCNNGC	3 cut(s)	684, 696, 702
CaiI	CAGNNNCTG	1 cut(s)	1160
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	2 cut(s)	451, 700
Cfr10I	RCCGGY	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	1105
Csp6I	GTAC	4 cut(s)	325, 623, 847, 1274
CspAI	ACCGGT	1 cut(s)	660
CviAII	CATG	8 cut(s)	128, 172, 544, 877, 1083, 1175, 1211, 1317
CviQI	GTAC	4 cut(s)	325, 623, 847, 1274
DdeI	CTNAG	4 cut(s)	420, 506, 644, 728
DpnI	GATC	4 cut(s)	113, 642, 785, 932
DpnII	GATC	4 cut(s)	111, 640, 783, 930
DraI	TTTAAA	1 cut(s)	865
DrdI	GACNNNNNNGTC	1 cut(s)	1027
DseDI	GACNNNNNNGTC	1 cut(s)	1027
EaeI	YGGCCR	1 cut(s)	1045
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	3 cut(s)	127, 171, 1082
Eco31I	GGTCTC	1 cut(s)	974
Eco47I	GGWCC	1 cut(s)	1105
Eco57I	CTGAAG	1 cut(s)	935
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	1094, 1267
EcoT14I	CCWWGG	3 cut(s)	127, 171, 1082
EcoT22I	ATGCAT	3 cut(s)	334, 878, 1176
ErhI	CCWWGG	3 cut(s)	127, 171, 1082
FaeI	CATG	8 cut(s)	131, 175, 547, 880, 1086, 1178, 1214, 1320
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	8 cut(s)	127, 171, 543, 876, 1082, 1174, 1210, 1316
FauNDI	CATATG	1 cut(s)	872
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	1 cut(s)	680
Fsp4HI	GCNGC	1 cut(s)	680
FspBI	CTAG	3 cut(s)	134, 252, 674
GlaI	GCGC	2 cut(s)	450, 699
GluI	GCNGC	1 cut(s)	680
HaeIII	GGCC	1 cut(s)	1047
HapII	CCGG	1 cut(s)	661
HhaI	GCGC	2 cut(s)	451, 700
Hin1II	CATG	8 cut(s)	131, 175, 547, 880, 1086, 1178, 1214, 1320
Hin6I	GCGC	2 cut(s)	449, 698
HinP1I	GCGC	2 cut(s)	449, 698
HincII	GTYRAC	2 cut(s)	723, 1076
HindII	GTYRAC	2 cut(s)	723, 1076
HindIII	AAGCTT	1 cut(s)	917
HinfI	GANTC	7 cut(s)	29, 441, 500, 524, 732, 770, 1028
HpaII	CCGG	1 cut(s)	661
HphI	GGTGA	4 cut(s)	22, 509, 589, 925
Hpy166II	GTNNAC	6 cut(s)	539, 630, 723, 807, 818, 1076
Hpy188I	TCNGA	5 cut(s)	647, 731, 775, 1123, 1199
Hpy188III	TCNNGA	3 cut(s)	461, 544, 1018
Hpy8I	GTNNAC	6 cut(s)	539, 630, 723, 807, 818, 1076
HpyAV	CCTTC	5 cut(s)	85, 284, 375, 458, 952
HpyCH4III	ACNGT	5 cut(s)	205, 339, 519, 627, 1055
HpyCH4IV	ACGT	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	925, 1260, 1269
HpyF3I	CTNAG	4 cut(s)	420, 506, 644, 728
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	8 cut(s)	131, 175, 547, 880, 1086, 1178, 1214, 1320
HspAI	GCGC	2 cut(s)	449, 698
Kzo9I	GATC	4 cut(s)	111, 640, 783, 930
LmnI	GCTCC	2 cut(s)	1097, 1190
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	3 cut(s)	341, 436, 977
MaeI	CTAG	3 cut(s)	134, 252, 674
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	5 cut(s)	224, 314, 497, 1162, 1177
MalI	GATC	4 cut(s)	113, 642, 785, 932
MboI	GATC	4 cut(s)	111, 640, 783, 930
MboII	GAAGA	4 cut(s)	398, 577, 778, 1003
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	706, 801
MlyI	GAGTC	4 cut(s)	23, 494, 533, 1037
MnlI	CCTC	6 cut(s)	6, 402, 550, 705, 994, 1137
Mph1103I	ATGCAT	3 cut(s)	334, 878, 1176
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	363, 717, 864, 1088
MslI	CAYNNNNRTG	3 cut(s)	337, 875, 1041
MspI	CCGG	1 cut(s)	661
MspR9I	CCNGG	2 cut(s)	1096, 1269
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	2 cut(s)	930, 1193
MvaI	CCWGG	2 cut(s)	1096, 1269
MvnI	CGCG	2 cut(s)	451, 700
MwoI	GCNNNNNNNGC	3 cut(s)	925, 1260, 1269
NcoI	CCATGG	3 cut(s)	127, 171, 1082
NdeI	CATATG	1 cut(s)	872
NdeII	GATC	4 cut(s)	111, 640, 783, 930
NlaIII	CATG	8 cut(s)	131, 175, 547, 880, 1086, 1178, 1214, 1320
NlaIV	GGNNCC	1 cut(s)	1262
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	3 cut(s)	334, 878, 1176
NspI	RCATGY	2 cut(s)	880, 1178
NspV	TTCGAA	2 cut(s)	220, 236
PagI	TCATGA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PctI	GAATGC	2 cut(s)	930, 1193
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	441, 732, 770
PflFI	GACNNNGTC	1 cut(s)	1053
PinAI	ACCGGT	1 cut(s)	660
PkrI	GCNGC	1 cut(s)	681
PleI	GAGTC	4 cut(s)	23, 494, 532, 1036
PpsI	GAGTC	4 cut(s)	23, 494, 532, 1036
PsiI	TTATAA	1 cut(s)	1133
Psp6I	CCWGG	2 cut(s)	1094, 1267
PspGI	CCWGG	2 cut(s)	1094, 1267
PspN4I	GGNNCC	1 cut(s)	1262
PspPI	GGNCC	1 cut(s)	1105
PsrI	GAACNNNNNNTAC	2 cut(s)	238, 270
PstNI	CAGNNNCTG	1 cut(s)	1160
PsuI	RGATCY	1 cut(s)	111
PsyI	GACNNNGTC	1 cut(s)	1053
RsaI	GTAC	4 cut(s)	326, 624, 848, 1275
RsaNI	GTAC	4 cut(s)	325, 623, 847, 1274
RseI	CAYNNNNRTG	3 cut(s)	337, 875, 1041
SalI	GTCGAC	1 cut(s)	721
SaqAI	TTAA	4 cut(s)	363, 717, 864, 1088
SatI	GCNGC	1 cut(s)	680
Sau3AI	GATC	4 cut(s)	111, 640, 783, 930
Sau96I	GGNCC	1 cut(s)	1105
SchI	GAGTC	4 cut(s)	23, 494, 533, 1037
ScrFI	CCNGG	2 cut(s)	1096, 1269
SduI	GDGCHC	2 cut(s)	706, 801
SfaNI	GCATC	3 cut(s)	341, 436, 977
SfcI	CTRYAG	1 cut(s)	267
SfuI	TTCGAA	2 cut(s)	220, 236
SinI	GGWCC	1 cut(s)	1105
SmiMI	CAYNNNNRTG	3 cut(s)	337, 875, 1041
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	3 cut(s)	134, 252, 674
StyD4I	CCNGG	2 cut(s)	1094, 1267
StyI	CCWWGG	3 cut(s)	127, 171, 1082
TaaI	ACNGT	5 cut(s)	205, 339, 519, 627, 1055
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	5 cut(s)	220, 236, 444, 722, 735
TaqII	GACCGA	1 cut(s)	1122
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	441, 732, 770
Tru1I	TTAA	4 cut(s)	363, 717, 864, 1088
Tru9I	TTAA	4 cut(s)	363, 717, 864, 1088
TscAI	CASTG	6 cut(s)	208, 342, 524, 806, 918, 943
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	679
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	8 cut(s)	104, 138, 303, 324, 591, 971, 1003, 1305
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	6 cut(s)	208, 342, 524, 806, 918, 943
Tth111I	GACNNNGTC	1 cut(s)	1053
VpaK11BI	GGWCC	1 cut(s)	1105
XapI	RAATTY	4 cut(s)	70, 231, 238, 1293
XceI	RCATGY	2 cut(s)	880, 1178
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	134, 252, 674
Zsp2I	ATGCAT	3 cut(s)	334, 878, 1176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.