Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

39517538 .. 39523294

Gene Structure 5757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGACTTGTATGCGATTCAATTGGATTTCTTTTTCATCTGGGTGTACTTACAAAACGATGGAGATGGTGAGGAATGTTTATTGGGACTCGTTTGCGCAATTCAGGTCTTTCTACAAACGGGTTTTGAATTTTGGCAATGAGATGATGAAGGGTTATTGGAAAGTTTGGATCTTTCAAACTTTCCATGGACTAGTTGCAATTGGTTCATTGCTGTCCTTTGTTGTAGCCATGGCATTTGCATATATGTATTTGTTTCCCACCGTTCCCTCGGTAGTTCGAAGTTACGGGATTTCGAATTCAGCTAGTTCGAATTCAAGTAGTTCCGTAGAGAAGTGCAATGTTTATGAAGGAAGCTGGATTGCAGATGAAAGTTACCCTTTGTACAATGCATCACTGTGTCCATTTGCAGAACGTGGATTTAATTGCTTGGCTAATGGAAGGGAAGATAGGGGTTATGCCAAGTGGAGGTGGAAGCCTAAGAATTGTGATATTCCAAGATTCGATGCGCGTAAAGTTCTTGAAGGGCTTCGTGGAAAACGAGTTGTTTTTGTGGGTGACTCGCTAAGTAGAACACAGTGGGAGTCTTTGATATGTTTACTCATGACAGGGGTGGAGGATAAGAAGAGTGTTTATGAAGTGAATGGGAATAAAATCACCAAGCAGATTAGATTTTTATCGGTACGGTTTACAACATTTGATCTCAGAATGGACTTTTACCGGTCAGTTTTCCTAGTGCAGCGTGCTTCAAAGCCAGCGCGAGCACCAAAGAGGGTTAAGTCGACACTCAGAATCAACAGGATAGATGACATTAGCAAAGAATGGATTGATTCAGATATTTTGATCTTCAATTCAGGGCACTGGTGGACACCGAGTAAACTTTTTGAACTGGGCTGCTATTTTCAGGTTGGTAAATCACTGAAGCTTGGAATGCCGATCACCACTGCCTTCAAAAAAGCTATGAACACTTGGGCATCTTGGGTTGAGACCTCAATCAACACAAATAGAACCAGTGTCTTCTTCAGGACTTTTGAGTCATCACATTGGAGTGGCCGACACCGTCATTCTTGCAAAGTGGGTCAACACCCTTGGTTAAGCTCCTGGGGAATGGACCGAAGCCCAGTTTCAGACACCATTATAAAGGTTGTGAGGAAAATGGCAGTTCCTGTAACAATTATGCATGTTACACCTATGGGAGCATTCCGAAGTGATGGTCATGTGGGTATTTGGAGTGATAATCCATCTGTGCCTGATTGTAGCCATTGGTGCCTACCTGGCGTACCTGATATGTGGAATGAAATTCTCTTGTCATATCTGCTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

440

Amino Acids

50.75

Weight (kDa)

9.58

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	110 - 163	7.6e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	164 - 436	1.9e-84	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1136
AasI	GACNNNNNNGTC	1 cut(s)	1030
Acc16I	TGCGCA	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	1263
AccI	GTMKAC	1 cut(s)	779
AccII	CGCG	2 cut(s)	508, 757
AclWI	GGATC	1 cut(s)	176
AcoI	YGGCCR	1 cut(s)	1048
AcsI	RAATTY	4 cut(s)	127, 295, 310, 1296
AcuI	CTGAAG	2 cut(s)	938, 1003
AfaI	GTAC	4 cut(s)	46, 383, 681, 1278
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgeI	ACCGGT	1 cut(s)	717
AgsI	TTSAA	9 cut(s)	19, 127, 176, 315, 521, 747, 847, 884, 949
AhlI	ACTAGT	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	1097, 1270
AluBI	AGCT	5 cut(s)	302, 354, 922, 956, 1095
AluI	AGCT	5 cut(s)	302, 354, 922, 956, 1095
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	1 cut(s)	977
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	1163
AoxI	GGCC	1 cut(s)	1048
ApeKI	GCWGC	2 cut(s)	736, 891
ApoI	RAATTY	4 cut(s)	127, 295, 310, 1296
ArsI	GACNNNNNNTTYG	2 cut(s)	1195, 1227
AsiGI	ACCGGT	1 cut(s)	717
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	3 cut(s)	97, 508, 757
AspS9I	GGNCC	1 cut(s)	1108
AsuHPI	GGTGA	4 cut(s)	79, 566, 646, 928
AsuII	TTCGAA	3 cut(s)	277, 293, 308
AvaII	GGWCC	1 cut(s)	1108
BaeGI	GKGCMC	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	1263
BbsI	GAAGAC	1 cut(s)	1006
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	2 cut(s)	748, 878
BccI	CCATC	4 cut(s)	52, 58, 1202, 1246
BciT130I	CCWGG	2 cut(s)	1099, 1272
BcoDI	GTCTC	1 cut(s)	977
BcuI	ACTAGT	1 cut(s)	190
BfaI	CTAG	3 cut(s)	191, 303, 731
BglI	GCCNNNNNGGC	1 cut(s)	1272
BisI	GCNGC	2 cut(s)	737, 892
BlsI	GCNGC	2 cut(s)	738, 893
Bme1390I	CCNGG	2 cut(s)	1099, 1272
Bme18I	GGWCC	1 cut(s)	1108
BmgT120I	GGNCC	1 cut(s)	1108
BmiI	GGNNCC	1 cut(s)	1265
BmrFI	CCNGG	2 cut(s)	1099, 1272
BmrI	ACTGGG	2 cut(s)	896, 1112
BmsI	GCATC	3 cut(s)	398, 493, 980
BmuI	ACTGGG	2 cut(s)	896, 1112
BpiI	GAAGAC	1 cut(s)	1006
Bpu14I	TTCGAA	3 cut(s)	277, 293, 308
BsaBI	GATNNNNATC	1 cut(s)	673
BsaI	GGTCTC	1 cut(s)	977
BsaJI	CCNNGG	5 cut(s)	184, 228, 267, 1085, 1098
BsaWI	WCCGGW	1 cut(s)	717
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse118I	RCCGGY	1 cut(s)	717
Bse1I	ACTGG	4 cut(s)	863, 891, 1008, 1118
Bse3DI	GCAATG	3 cut(s)	142, 206, 343
Bse8I	GATNNNNATC	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	1099, 1272
BseDI	CCNNGG	5 cut(s)	184, 228, 267, 1085, 1098
BseJI	GATNNNNATC	1 cut(s)	673
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMI	GCAATG	3 cut(s)	142, 206, 343
BseMII	CTCAG	2 cut(s)	715, 799
BseNI	ACTGG	4 cut(s)	863, 891, 1008, 1118
BseSI	GKGCMC	1 cut(s)	858
BseXI	GCAGC	2 cut(s)	748, 878
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	2 cut(s)	508, 757
BshFI	GGCC	1 cut(s)	1050
BshNI	GGYRCC	1 cut(s)	1263
BshTI	ACCGGT	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	763
BsiSI	CCGG	1 cut(s)	718
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	977
BsmFI	GGGAC	1 cut(s)	98
BsmI	GAATGC	2 cut(s)	933, 1196
BsnI	GGCC	1 cut(s)	1050
Bso31I	GGTCTC	1 cut(s)	977
Bsp119I	TTCGAA	3 cut(s)	277, 293, 308
Bsp1286I	GDGCHC	2 cut(s)	763, 858
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	168, 697, 840, 933
Bsp19I	CCATGG	2 cut(s)	184, 228
BspANI	GGCC	1 cut(s)	1050
BspCNI	CTCAG	2 cut(s)	714, 798
BspFNI	CGCG	2 cut(s)	508, 757
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	1 cut(s)	1265
BspPI	GGATC	1 cut(s)	176
BspT104I	TTCGAA	3 cut(s)	277, 293, 308
BspT107I	GGYRCC	1 cut(s)	1263
BspTNI	GGTCTC	1 cut(s)	977
BsrDI	GCAATG	3 cut(s)	142, 206, 343
BsrFI	RCCGGY	1 cut(s)	717
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	4 cut(s)	863, 891, 1008, 1118
BssAI	RCCGGY	1 cut(s)	717
BssECI	CCNNGG	5 cut(s)	184, 228, 267, 1085, 1098
BssMI	GATC	4 cut(s)	168, 697, 840, 933
BssT1I	CCWWGG	3 cut(s)	184, 228, 1085
Bst2UI	CCWGG	2 cut(s)	1099, 1272
Bst4CI	ACNGT	5 cut(s)	262, 396, 576, 684, 1058
Bst6I	CTCTTC	1 cut(s)	617
BstAUI	TGTACA	1 cut(s)	381
BstBI	TTCGAA	3 cut(s)	277, 293, 308
BstC8I	GCNNGC	3 cut(s)	741, 753, 759
BstDEI	CTNAG	4 cut(s)	477, 563, 701, 785
BstDSI	CCRYGG	2 cut(s)	184, 228
BstFNI	CGCG	2 cut(s)	508, 757
BstHHI	GCGC	3 cut(s)	97, 508, 757
BstKTI	GATC	4 cut(s)	171, 700, 843, 936
BstMAI	GTCTC	1 cut(s)	977
BstMBI	GATC	4 cut(s)	168, 697, 840, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	928, 1263, 1272
BstNI	CCWGG	2 cut(s)	1099, 1272
BstNSI	RCATGY	1 cut(s)	1181
BstSCI	CCNGG	2 cut(s)	1097, 1270
BstSLI	GKGCMC	1 cut(s)	858
BstUI	CGCG	2 cut(s)	508, 757
BstV1I	GCAGC	2 cut(s)	748, 878
BstV2I	GAAGAC	1 cut(s)	1006
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	1050
BtgI	CCRYGG	2 cut(s)	184, 228
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	6 cut(s)	392, 581, 856, 914, 939, 1015
Cac8I	GCNNGC	3 cut(s)	741, 753, 759
CaiI	CAGNNNCTG	1 cut(s)	1163
CciI	TCATGA	1 cut(s)	600
CfoI	GCGC	3 cut(s)	97, 508, 757
Cfr10I	RCCGGY	1 cut(s)	717
Cfr13I	GGNCC	1 cut(s)	1108
Csp6I	GTAC	4 cut(s)	45, 382, 680, 1277
CspAI	ACCGGT	1 cut(s)	717
CviAII	CATG	6 cut(s)	185, 229, 601, 1178, 1214, 1320
CviQI	GTAC	4 cut(s)	45, 382, 680, 1277
DdeI	CTNAG	4 cut(s)	477, 563, 701, 785
DpnI	GATC	4 cut(s)	170, 699, 842, 935
DpnII	GATC	4 cut(s)	168, 697, 840, 933
DrdI	GACNNNNNNGTC	1 cut(s)	1030
DseDI	GACNNNNNNGTC	1 cut(s)	1030
EaeI	YGGCCR	1 cut(s)	1048
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Eco130I	CCWWGG	3 cut(s)	184, 228, 1085
Eco31I	GGTCTC	1 cut(s)	977
Eco47I	GGWCC	1 cut(s)	1108
Eco57I	CTGAAG	2 cut(s)	938, 1003
EcoRI	GAATTC	2 cut(s)	295, 310
EcoRII	CCWGG	2 cut(s)	1097, 1270
EcoT14I	CCWWGG	3 cut(s)	184, 228, 1085
EcoT22I	ATGCAT	2 cut(s)	391, 1179
ErhI	CCWWGG	3 cut(s)	184, 228, 1085
FaeI	CATG	6 cut(s)	188, 232, 604, 1181, 1217, 1323
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	6 cut(s)	184, 228, 600, 1177, 1213, 1319
FblI	GTMKAC	1 cut(s)	779
Fnu4HI	GCNGC	2 cut(s)	737, 892
Fsp4HI	GCNGC	2 cut(s)	737, 892
FspBI	CTAG	3 cut(s)	191, 303, 731
FspI	TGCGCA	1 cut(s)	96
GlaI	GCGC	3 cut(s)	96, 507, 756
GluI	GCNGC	2 cut(s)	737, 892
HaeIII	GGCC	1 cut(s)	1050
HapII	CCGG	1 cut(s)	718
HhaI	GCGC	3 cut(s)	97, 508, 757
Hin1II	CATG	6 cut(s)	188, 232, 604, 1181, 1217, 1323
Hin6I	GCGC	3 cut(s)	95, 506, 755
HinP1I	GCGC	3 cut(s)	95, 506, 755
HincII	GTYRAC	2 cut(s)	780, 1079
HindII	GTYRAC	2 cut(s)	780, 1079
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	8 cut(s)	15, 86, 498, 557, 581, 789, 827, 1031
HpaII	CCGG	1 cut(s)	718
HphI	GGTGA	4 cut(s)	79, 566, 646, 928
Hpy166II	GTNNAC	7 cut(s)	45, 596, 687, 780, 864, 875, 1079
Hpy188I	TCNGA	5 cut(s)	704, 788, 832, 1126, 1202
Hpy188III	TCNNGA	3 cut(s)	518, 601, 1021
Hpy8I	GTNNAC	7 cut(s)	45, 596, 687, 780, 864, 875, 1079
HpyAV	CCTTC	5 cut(s)	142, 341, 432, 515, 955
HpyCH4III	ACNGT	5 cut(s)	262, 396, 576, 684, 1058
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	9 cut(s)	197, 239, 336, 362, 389, 407, 736, 1068, 1177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	928, 1263, 1272
HpyF3I	CTNAG	4 cut(s)	477, 563, 701, 785
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	188, 232, 604, 1181, 1217, 1323
HspAI	GCGC	3 cut(s)	95, 506, 755
Kzo9I	GATC	4 cut(s)	168, 697, 840, 933
LmnI	GCTCC	2 cut(s)	1100, 1193
Lsp1109I	GCAGC	2 cut(s)	748, 878
LweI	GCATC	3 cut(s)	398, 493, 980
MaeI	CTAG	3 cut(s)	191, 303, 731
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	5 cut(s)	281, 371, 554, 1165, 1180
MalI	GATC	4 cut(s)	170, 699, 842, 935
MboI	GATC	4 cut(s)	168, 697, 840, 933
MboII	GAAGA	5 cut(s)	455, 634, 835, 1006, 1009
MfeI	CAATTG	2 cut(s)	19, 198
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	763, 858
MlyI	GAGTC	4 cut(s)	80, 551, 590, 1040
MnlI	CCTC	7 cut(s)	63, 277, 459, 607, 762, 997, 1140
Mph1103I	ATGCAT	2 cut(s)	391, 1179
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	3 cut(s)	420, 774, 1091
MslI	CAYNNNNRTG	3 cut(s)	40, 394, 1044
MspI	CCGG	1 cut(s)	718
MspR9I	CCNGG	2 cut(s)	1099, 1272
MunI	CAATTG	2 cut(s)	19, 198
Mva1269I	GAATGC	2 cut(s)	933, 1196
MvaI	CCWGG	2 cut(s)	1099, 1272
MvnI	CGCG	2 cut(s)	508, 757
MwoI	GCNNNNNNNGC	3 cut(s)	928, 1263, 1272
NcoI	CCATGG	2 cut(s)	184, 228
NdeII	GATC	4 cut(s)	168, 697, 840, 933
NlaIII	CATG	6 cut(s)	188, 232, 604, 1181, 1217, 1323
NlaIV	GGNNCC	1 cut(s)	1265
NmuCI	GTSAC	1 cut(s)	554
NsbI	TGCGCA	1 cut(s)	96
NsiI	ATGCAT	2 cut(s)	391, 1179
NspI	RCATGY	1 cut(s)	1181
NspV	TTCGAA	3 cut(s)	277, 293, 308
PagI	TCATGA	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	535
PctI	GAATGC	2 cut(s)	933, 1196
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	15, 498, 789, 827
PflFI	GACNNNGTC	1 cut(s)	1056
PinAI	ACCGGT	1 cut(s)	717
PkrI	GCNGC	2 cut(s)	738, 893
PleI	GAGTC	4 cut(s)	80, 551, 589, 1039
PpsI	GAGTC	4 cut(s)	80, 551, 589, 1039
PsiI	TTATAA	1 cut(s)	1136
Psp6I	CCWGG	2 cut(s)	1097, 1270
PspGI	CCWGG	2 cut(s)	1097, 1270
PspN4I	GGNNCC	1 cut(s)	1265
PspPI	GGNCC	1 cut(s)	1108
PstNI	CAGNNNCTG	1 cut(s)	1163
PsuI	RGATCY	1 cut(s)	168
PsyI	GACNNNGTC	1 cut(s)	1056
RsaI	GTAC	4 cut(s)	46, 383, 681, 1278
RsaNI	GTAC	4 cut(s)	45, 382, 680, 1277
RseI	CAYNNNNRTG	3 cut(s)	40, 394, 1044
SalI	GTCGAC	1 cut(s)	778
SaqAI	TTAA	3 cut(s)	420, 774, 1091
SatI	GCNGC	2 cut(s)	737, 892
Sau3AI	GATC	4 cut(s)	168, 697, 840, 933
Sau96I	GGNCC	1 cut(s)	1108
SchI	GAGTC	4 cut(s)	80, 551, 590, 1040
ScrFI	CCNGG	2 cut(s)	1099, 1272
SduI	GDGCHC	2 cut(s)	763, 858
SfaNI	GCATC	3 cut(s)	398, 493, 980
SfuI	TTCGAA	3 cut(s)	277, 293, 308
SinI	GGWCC	1 cut(s)	1108
SmiMI	CAYNNNNRTG	3 cut(s)	40, 394, 1044
SpeI	ACTAGT	1 cut(s)	190
SspMI	CTAG	3 cut(s)	191, 303, 731
StyD4I	CCNGG	2 cut(s)	1097, 1270
StyI	CCWWGG	3 cut(s)	184, 228, 1085
TaaI	ACNGT	5 cut(s)	262, 396, 576, 684, 1058
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	5 cut(s)	277, 293, 308, 501, 779
TaqII	GACCGA	1 cut(s)	1125
TatI	WGTACW	2 cut(s)	44, 381
TfiI	GAWTC	4 cut(s)	15, 498, 789, 827
Tru1I	TTAA	3 cut(s)	420, 774, 1091
Tru9I	TTAA	3 cut(s)	420, 774, 1091
TscAI	CASTG	6 cut(s)	399, 581, 863, 921, 946, 1015
TseFI	GTSAC	1 cut(s)	554
TseI	GCWGC	2 cut(s)	736, 891
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	8 cut(s)	24, 161, 195, 360, 381, 648, 974, 1308
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	6 cut(s)	399, 581, 863, 921, 946, 1015
Tth111I	GACNNNGTC	1 cut(s)	1056
VpaK11BI	GGWCC	1 cut(s)	1108
XapI	RAATTY	4 cut(s)	127, 295, 310, 1296
XceI	RCATGY	1 cut(s)	1181
XmiI	GTMKAC	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	3 cut(s)	191, 303, 731
Zsp2I	ATGCAT	2 cut(s)	391, 1179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.