Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

16004189 .. 16006214

Gene Structure 2026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAGCAAATTTAGTAAGAGTACGTCGTTCAGCCCGACTACATCTTTCACTAGGAGTACATCATTTAATAGAAGTCAATCATTGAAATCAAGAACCTTGAGTGTAACAACCCCAACCAGCTGTCAATCTAGCTGGGTATCGTGGGTTAGTCTGTTTAGTTGGGTCTCGCGTTGGTTTAACACACTCATAGTGACTGGCATTTTCATTTCGTTTCTCATTGCCCTTTATGGGGGCTATCTGTATGTCATGCCAAGTCTCAGCCTCACTTTTCATGGTTATGGTGTTTTGAAACATGCTAATTTGATAAGCAGCTGCGATGTGTTTGATGGAAGTTGGGTTTTCGATGATAATTATCCATTGTACAATGCTACGGAGTGTCCCTTTGTGGAGCAGGGTTTCAATTGTTTGGCTAATGGTCGTAGAGATAAGCATTATTTGAAATATAGTTGGAAACCTAACAATTGTGACATTCCAAGATTTGACGTGCCGAGTATATTAGAGAAGCTTAGAGGAAAAAGAGTTGTTTTTGTGGGGGATTCTATGAGTAGAACACAGTGGGAGTCACTAATTTGCTTGCTCATGACTGGGGTGGAGGATAAGAAGAGTGTGTATGAAGTCAACGGTAATAAGATTACGAAACAGATCAGATATTTGAGTGTTCACTTTAGTTCCTTCAATTTTACTATTGAGTTCTTTCGATCAGTTTTCTTGGTTCAACATGGTTGGTTGCCTAGACATGCTCCAAAGAGGGTCAAGTCTATACTTAAGTTGGACAAGTTAGATGACATTAGCAATCAGTGGATTAATTCTGATATTCTGATATTCAACACTGGACAGTGGTGGGTTCCGGAAAAACTATTTGACTTGGGTTGCTATTTCCAGTTTGGAAACTCACTAAAGCTTGGAATGTCAATTCCTACTGCCTTTAGAACAGCACTGGATACTTGGGCATCATGGGTTGAGGAAAAAATCGACACTAACAGAACTCGTGTCTTTTTTCGGACTTTTGAGCCCTCTCACTGGAGTGATCCAACTCGTAGATTTTGCAATGTGACTCTTCACCCAATGGTAGACACCAGAAATAGAGACAAAAGCATTTTTTCAGACACTGTGCATGAGGTGGTAAAGAATATGACAATTAATGTAGCCGTTCTTCATGTAACTTCAATGTCATCTTTCCGAAGTGATGCACACGTTGGTAACTGGAGCGATAAACCATCTTTTCCTGATTGTAGCCACTGGTGTTTACCAGGTTTACCTGATGTGTGGAATGAAATCATCCTCTTTTACCTGCCTTATGACTCTAAGGGGATTCTAGTAAGTATTAGCATCGGTTTTTTTACCCTCTTTCACACTTGTTTTCTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

457

Amino Acids

52.67

Weight (kDa)

8.93

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	104 - 156	9.5e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	157 - 428	9.9e-86	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1299
AccI	GTMKAC	1 cut(s)	1071
AccII	CGCG	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	847
AclWI	GGATC	1 cut(s)	1022
AcsI	RAATTY	1 cut(s)	8
AfaI	GTAC	3 cut(s)	22, 58, 362
AfiI	CCNNNNNNNGG	3 cut(s)	228, 229, 1020
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	1192
AgsI	TTSAA	8 cut(s)	85, 289, 400, 439, 676, 716, 826, 1167
AjiI	CACGTC	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	1249
AleI	CACNNNNGTG	1 cut(s)	1023
AluBI	AGCT	5 cut(s)	120, 132, 312, 505, 901
AluI	AGCT	5 cut(s)	120, 132, 312, 505, 901
Alw26I	GTCTC	3 cut(s)	169, 260, 1080
AlwI	GGATC	1 cut(s)	1022
AlwNI	CAGNNNCTG	1 cut(s)	1109
Aor13HI	TCCGGA	1 cut(s)	847
ApeKI	GCWGC	2 cut(s)	309, 312
ApoI	RAATTY	1 cut(s)	8
AseI	ATTAAT	2 cut(s)	804, 1140
AsuHPI	GGTGA	1 cut(s)	1052
BanII	GRGCYC	1 cut(s)	1014
BarI	GAAGNNNNNNTAC	2 cut(s)	1137, 1169
BauI	CACGAG	1 cut(s)	987
BbvI	GCAGC	2 cut(s)	299, 321
BccI	CCATC	2 cut(s)	320, 1225
BceAI	ACGGC	1 cut(s)	1133
BciT130I	CCWGG	1 cut(s)	1251
BciVI	GTATCC	1 cut(s)	934
BcoDI	GTCTC	3 cut(s)	169, 260, 1080
BfaI	CTAG	4 cut(s)	51, 129, 732, 1316
BfrI	CTTAAG	1 cut(s)	764
BfuAI	ACCTGC	1 cut(s)	1299
BfuI	GTATCC	1 cut(s)	934
BisI	GCNGC	2 cut(s)	310, 313
BlsI	GCNGC	2 cut(s)	311, 314
Bme1390I	CCNGG	1 cut(s)	1251
BmgBI	CACGTC	1 cut(s)	484
BmiI	GGNNCC	1 cut(s)	846
BmrFI	CCNGG	1 cut(s)	1251
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	3 cut(s)	959, 1177, 1338
BmuI	ACTGGG	1 cut(s)	594
BpmI	CTGGAG	2 cut(s)	1042, 1225
BpuEI	CTTGAG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	351
BsaI	GGTCTC	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	847
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 229, 1020
Bse1I	ACTGG	8 cut(s)	199, 589, 835, 880, 942, 1025, 1208, 1244
Bse3DI	GCAATG	2 cut(s)	216, 1054
Bse8I	GATNNNNATC	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	847
BseBI	CCWGG	1 cut(s)	1251
BseGI	GGATG	1 cut(s)	1278
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	3 cut(s)	228, 229, 1020
BseMI	GCAATG	2 cut(s)	216, 1054
BseMII	CTCAG	1 cut(s)	271
BseNI	ACTGG	8 cut(s)	199, 589, 835, 880, 942, 1025, 1208, 1244
BseXI	GCAGC	2 cut(s)	299, 321
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	848
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	3 cut(s)	228, 229, 1020
BsmAI	GTCTC	3 cut(s)	169, 260, 1080
BsmFI	GGGAC	1 cut(s)	363
Bso31I	GGTCTC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	1014
Bsp13I	TCCGGA	1 cut(s)	847
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	3 cut(s)	642, 698, 1027
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	847
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	846
BspMI	ACCTGC	1 cut(s)	1299
BspPI	GGATC	1 cut(s)	1022
BspTI	CTTAAG	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	216, 1054
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	8 cut(s)	199, 589, 835, 880, 942, 1025, 1208, 1244
BssMI	GATC	3 cut(s)	642, 698, 1027
BssSI	CACGAG	1 cut(s)	987
Bst2BI	CACGAG	1 cut(s)	987
Bst2UI	CCWGG	1 cut(s)	1251
Bst4CI	ACNGT	4 cut(s)	555, 623, 837, 1111
Bst6I	CTCTTC	2 cut(s)	596, 1062
BstAFI	CTTAAG	1 cut(s)	764
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	3 cut(s)	257, 506, 1305
BstF5I	GGATG	1 cut(s)	1278
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	3 cut(s)	645, 701, 1030
BstMAI	GTCTC	3 cut(s)	169, 260, 1080
BstMBI	GATC	3 cut(s)	642, 698, 1027
BstNI	CCWGG	1 cut(s)	1251
BstNSI	RCATGY	2 cut(s)	296, 740
BstSCI	CCNGG	1 cut(s)	1249
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	299, 321
BsuI	GTATCC	1 cut(s)	934
BtgZI	GCGATG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	484
BtsCI	GGATG	1 cut(s)	1278
BtsIMutI	CAGTG	8 cut(s)	560, 803, 828, 842, 935, 1018, 1107, 1237
BveI	ACCTGC	1 cut(s)	1299
Cac8I	GCNNGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	1109
CciI	TCATGA	1 cut(s)	579
CsiI	ACCWGGT	1 cut(s)	1249
Csp6I	GTAC	3 cut(s)	21, 57, 361
CviQI	GTAC	3 cut(s)	21, 57, 361
DdeI	CTNAG	3 cut(s)	257, 506, 1305
DpnI	GATC	3 cut(s)	644, 700, 1029
DpnII	GATC	3 cut(s)	642, 698, 1027
Eam1104I	CTCTTC	2 cut(s)	596, 1062
EarI	CTCTTC	2 cut(s)	596, 1062
Eco24I	GRGCYC	1 cut(s)	1014
Eco31I	GGTCTC	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	1249
EcoT38I	GRGCYC	1 cut(s)	1014
FaqI	GGGAC	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	1071
Fnu4HI	GCNGC	2 cut(s)	310, 313
FokI	GGATG	1 cut(s)	1265
FriOI	GRGCYC	1 cut(s)	1014
Fsp4HI	GCNGC	2 cut(s)	310, 313
FspBI	CTAG	4 cut(s)	51, 129, 732, 1316
GluI	GCNGC	2 cut(s)	310, 313
GsaI	CCCAGC	1 cut(s)	136
GsuI	CTGGAG	2 cut(s)	1042, 1225
HapII	CCGG	1 cut(s)	848
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	2 cut(s)	503, 899
HinfI	GANTC	5 cut(s)	536, 560, 1054, 1301, 1312
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	1 cut(s)	1052
Hpy166II	GTNNAC	5 cut(s)	619, 661, 1072, 1247, 1256
Hpy188I	TCNGA	6 cut(s)	647, 811, 819, 1002, 1105, 1181
Hpy188III	TCNNGA	4 cut(s)	90, 580, 848, 1226
Hpy8I	GTNNAC	5 cut(s)	619, 661, 1072, 1247, 1256
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	682
HpyCH4III	ACNGT	4 cut(s)	555, 623, 837, 1111
HpyCH4IV	ACGT	3 cut(s)	23, 483, 1194
HpyCH4V	TGCA	3 cut(s)	1047, 1114, 1190
HpyF3I	CTNAG	3 cut(s)	257, 506, 1305
HpySE526I	ACGT	3 cut(s)	23, 483, 1194
Kpn2I	TCCGGA	1 cut(s)	847
Kzo9I	GATC	3 cut(s)	642, 698, 1027
LmnI	GCTCC	3 cut(s)	388, 745, 1206
Lsp1109I	GCAGC	2 cut(s)	299, 321
LweI	GCATC	3 cut(s)	959, 1177, 1338
MabI	ACCWGGT	1 cut(s)	1249
MaeI	CTAG	4 cut(s)	51, 129, 732, 1316
MaeII	ACGT	3 cut(s)	23, 483, 1194
MaeIII	GTNAC	7 cut(s)	103, 190, 464, 561, 1051, 1159, 1199
MalI	GATC	3 cut(s)	644, 700, 1029
MboI	GATC	3 cut(s)	642, 698, 1027
MboII	GAAGA	3 cut(s)	613, 1049, 1145
MfeI	CAATTG	2 cut(s)	400, 460
MhlI	GDGCHC	1 cut(s)	1014
MlyI	GAGTC	3 cut(s)	569, 1048, 1295
MmeI	TCCRAC	3 cut(s)	428, 750, 1055
MnlI	CCTC	9 cut(s)	272, 503, 586, 741, 955, 1024, 1111, 1292, 1355
MroI	TCCGGA	1 cut(s)	847
MseI	TTAA	5 cut(s)	66, 177, 765, 804, 1140
MslI	CAYNNNNRTG	2 cut(s)	276, 1023
MspA1I	CMGCKG	2 cut(s)	120, 312
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	1 cut(s)	1251
MunI	CAATTG	2 cut(s)	400, 460
MvaI	CCWGG	1 cut(s)	1251
MvnI	CGCG	1 cut(s)	169
NdeII	GATC	3 cut(s)	642, 698, 1027
NlaIV	GGNNCC	1 cut(s)	846
NmeAIII	GCCGAG	1 cut(s)	513
NmuCI	GTSAC	4 cut(s)	190, 464, 561, 1051
NspI	RCATGY	2 cut(s)	296, 740
OliI	CACNNNNGTG	1 cut(s)	1023
PagI	TCATGA	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	536, 1312
PkrI	GCNGC	2 cut(s)	311, 314
PleI	GAGTC	3 cut(s)	568, 1048, 1295
PpsI	GAGTC	3 cut(s)	568, 1048, 1295
PshBI	ATTAAT	2 cut(s)	804, 1140
Psp6I	CCWGG	1 cut(s)	1249
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	1249
PspN4I	GGNNCC	1 cut(s)	846
PstNI	CAGNNNCTG	1 cut(s)	1109
PvuII	CAGCTG	2 cut(s)	120, 312
RsaI	GTAC	3 cut(s)	22, 58, 362
RsaNI	GTAC	3 cut(s)	21, 57, 361
RseI	CAYNNNNRTG	2 cut(s)	276, 1023
SaqAI	TTAA	5 cut(s)	66, 177, 765, 804, 1140
SatI	GCNGC	2 cut(s)	310, 313
Sau3AI	GATC	3 cut(s)	642, 698, 1027
SchI	GAGTC	3 cut(s)	569, 1048, 1295
ScrFI	CCNGG	1 cut(s)	1251
SduI	GDGCHC	1 cut(s)	1014
SexAI	ACCWGGT	1 cut(s)	1249
SfaNI	GCATC	3 cut(s)	959, 1177, 1338
SmiMI	CAYNNNNRTG	2 cut(s)	276, 1023
SmlI	CTYRAG	2 cut(s)	97, 764
SmoI	CTYRAG	2 cut(s)	97, 764
SspMI	CTAG	4 cut(s)	51, 129, 732, 1316
StyD4I	CCNGG	1 cut(s)	1249
TaaI	ACNGT	4 cut(s)	555, 623, 837, 1111
TaiI	ACGT	3 cut(s)	26, 486, 1197
TaqI	TCGA	3 cut(s)	342, 697, 972
TatI	WGTACW	2 cut(s)	56, 360
TfiI	GAWTC	2 cut(s)	536, 1312
Tru1I	TTAA	5 cut(s)	66, 177, 765, 804, 1140
Tru9I	TTAA	5 cut(s)	66, 177, 765, 804, 1140
TscAI	CASTG	8 cut(s)	560, 803, 835, 842, 942, 1025, 1114, 1244
TseFI	GTSAC	4 cut(s)	190, 464, 561, 1051
TseI	GCWGC	2 cut(s)	309, 312
Tsp45I	GTSAC	4 cut(s)	190, 464, 561, 1051
TspDTI	ATGAA	5 cut(s)	193, 260, 627, 1145, 1287
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	8 cut(s)	560, 803, 835, 842, 942, 1025, 1114, 1244
Vha464I	CTTAAG	1 cut(s)	764
VspI	ATTAAT	2 cut(s)	804, 1140
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	2 cut(s)	296, 740
XmiI	GTMKAC	1 cut(s)	1071
XspI	CTAG	4 cut(s)	51, 129, 732, 1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.