Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

12866930 .. 12871494

Gene Structure 4565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g14650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAGATGGTGAGGAATGTTAGTTGGGTCTCATTTGCCCAGTTCAGGTCTTTCTACAAACGGGTTTTGAAATTTGGCAATGAGATGATGAAGGGTTATTGGAAAGTTTGGATCTTTCAAACTTTCCATGGACTAGTTGCAATTGGTTCATTGGTGTCCTTTATTTTAGCCTTGGCATTTGCATATATGTATATGTTTCCCACTATTACCCCAGTAGTTCAAAGTTACGGAATTTCGGATTCGGGTAGTTTAAGTTCAGGTGGTTCAGTAGACGAGTGCAATGTTTATGAAGGAAGCTGGATTGCAGATGAAAGTTACCCTTTGTACAATGCATCACTGTGTCCATTTGCCGAACGTGGATTTGATTGCTTGGCTAATGGAAGGGAAGATATGGGTTATGCCAAGTGGAGGTGGAAGCCTAAAAATTGTGATATTCCAAGATTTGATGCGCGTAGGGTTCTTGAAGGGCTTCGTGGAAAACGAGTTGTTTTTGTGGGTGACTCACTGAGTAGAACACAGTGGGAGTCTTTGATATGTTTACTCATGACAGGGGTGGAGGATAAGGAGAGTGTTTATGAAGTGAATGGGAATAAAATCACCAAGCAGATTAGATTTTTATCGGTACGGTTTATGACATTTGATCTCAGATTGGACTTTTATCGGTCAGTTTTCCTAGTGCAGCCTGCTTCAAAGCCAGTGAGAGCACCAAAGAGGGTTAAATCAACACTCAGAATCGACAAGATGGATGACATTAGCAAAGAATGGATTGATTCCGATATCTTGATCTTCAATTCAGGGCACTGGTGGACACCAAGTAAACTTTTTGAACTGGGCTGCTATTTCCAGATGGGTAAATCATTGAAGCTTGGAATGCCGATCACCACTGCCTTCAAACAAGCTATGAATACTTGGGCATCTTGGGTTGAGACCACAATCAACACAAACAGAACAAGTGTCTTCTTCAGGACTTTTGAGTCATCACATTGGAGTGGCCGACACCGTTATTCTTGCAAAGTGGGTCAACGCCCTTGGTTAAGGTCTTGGGGGATGGACCAAAGCCCAGTTTCAGACACCATTATAAAGGTTGTGAACAAAATGGCAGTTCCTGTAACGATTATGCATGTTACACCTATGGGATCATTCCGAAGTGATGGTCATGTGGGTCTTTGGAGTGATAATCCATCTGTGCCTGATTGTAGCCATTGGTGCCTACCTGGTGTACCTGATATGTGGAATGAAATTCTCTTGTCATATCTGCTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

422

Amino Acids

48.44

Weight (kDa)

9.09

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	92 - 144	1.2e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 330	5e-57	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1079
AasI	GACNNNNNNGTC	1 cut(s)	973
AccB1I	GGYRCC	1 cut(s)	1206
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	451
AclWI	GGATC	2 cut(s)	119, 1144
AcoI	YGGCCR	1 cut(s)	991
AcsI	RAATTY	3 cut(s)	71, 231, 1239
AcuI	CTGAAG	1 cut(s)	946
AfaI	GTAC	3 cut(s)	326, 624, 1221
AfiI	CCNNNNNNNGG	2 cut(s)	45, 408
AgsI	TTSAA	9 cut(s)	70, 119, 221, 464, 690, 790, 827, 862, 892
AhlI	ACTAGT	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	1213
AluBI	AGCT	3 cut(s)	297, 865, 899
AluI	AGCT	3 cut(s)	297, 865, 899
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	2 cut(s)	34, 920
AlwI	GGATC	2 cut(s)	119, 1144
AlwNI	CAGNNNCTG	1 cut(s)	1106
AoxI	GGCC	1 cut(s)	991
ApeKI	GCWGC	2 cut(s)	679, 834
ApoI	RAATTY	3 cut(s)	71, 231, 1239
ArsI	GACNNNNNNTTYG	2 cut(s)	1138, 1170
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	1051
AsuHPI	GGTGA	4 cut(s)	22, 509, 589, 871
AvaII	GGWCC	1 cut(s)	1051
BaeGI	GKGCMC	1 cut(s)	801
BanI	GGYRCC	1 cut(s)	1206
BbsI	GAAGAC	1 cut(s)	949
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	2 cut(s)	691, 821
BccI	CCATC	5 cut(s)	736, 841, 1042, 1145, 1189
BciT130I	CCWGG	1 cut(s)	1215
BcoDI	GTCTC	2 cut(s)	34, 920
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	2 cut(s)	134, 674
BisI	GCNGC	2 cut(s)	680, 835
BlsI	GCNGC	2 cut(s)	681, 836
Bme1390I	CCNGG	1 cut(s)	1215
Bme18I	GGWCC	1 cut(s)	1051
BmgT120I	GGNCC	1 cut(s)	1051
BmiI	GGNNCC	1 cut(s)	1208
BmrFI	CCNGG	1 cut(s)	1215
BmrI	ACTGGG	4 cut(s)	34, 206, 839, 1055
BmsI	GCATC	3 cut(s)	341, 436, 923
BmuI	ACTGGG	4 cut(s)	34, 206, 839, 1055
BpiI	GAAGAC	1 cut(s)	949
BsaBI	GATNNNNATC	1 cut(s)	616
BsaI	GGTCTC	2 cut(s)	34, 920
BsaJI	CCNNGG	3 cut(s)	127, 171, 1028
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 408
Bse1I	ACTGG	6 cut(s)	40, 212, 695, 806, 834, 1061
Bse3DI	GCAATG	2 cut(s)	85, 286
Bse8I	GATNNNNATC	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	1215
BseDI	CCNNGG	3 cut(s)	127, 171, 1028
BseGI	GGATG	2 cut(s)	751, 1053
BseJI	GATNNNNATC	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	45, 408
BseMI	GCAATG	2 cut(s)	85, 286
BseMII	CTCAG	3 cut(s)	497, 658, 742
BseNI	ACTGG	6 cut(s)	40, 212, 695, 806, 834, 1061
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	2 cut(s)	691, 821
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	1 cut(s)	451
BshFI	GGCC	1 cut(s)	993
BshNI	GGYRCC	1 cut(s)	1206
BsiHKAI	GWGCWC	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	45, 408
BsmAI	GTCTC	2 cut(s)	34, 920
BsmI	GAATGC	1 cut(s)	876
BsnI	GGCC	1 cut(s)	993
Bso31I	GGTCTC	2 cut(s)	34, 920
Bsp1286I	GDGCHC	2 cut(s)	706, 801
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	5 cut(s)	111, 640, 783, 876, 1136
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	1 cut(s)	993
BspCNI	CTCAG	3 cut(s)	498, 657, 741
BspFNI	CGCG	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	1208
BspPI	GGATC	2 cut(s)	119, 1144
BspT107I	GGYRCC	1 cut(s)	1206
BspTNI	GGTCTC	2 cut(s)	34, 920
BsrDI	GCAATG	2 cut(s)	85, 286
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	6 cut(s)	40, 212, 695, 806, 834, 1061
BssECI	CCNNGG	3 cut(s)	127, 171, 1028
BssMI	GATC	5 cut(s)	111, 640, 783, 876, 1136
BssT1I	CCWWGG	3 cut(s)	127, 171, 1028
Bst2UI	CCWGG	1 cut(s)	1215
Bst4CI	ACNGT	4 cut(s)	339, 519, 627, 1001
BstAUI	TGTACA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	3 cut(s)	506, 644, 728
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	751, 1053
BstFNI	CGCG	1 cut(s)	451
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	5 cut(s)	114, 643, 786, 879, 1139
BstMAI	GTCTC	2 cut(s)	34, 920
BstMBI	GATC	5 cut(s)	111, 640, 783, 876, 1136
BstMWI	GCNNNNNNNGC	2 cut(s)	871, 1206
BstNI	CCWGG	1 cut(s)	1215
BstNSI	RCATGY	1 cut(s)	1124
BstSCI	CCNGG	1 cut(s)	1213
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	691, 821
BstV2I	GAAGAC	1 cut(s)	949
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	993
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	751, 1053
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	6 cut(s)	335, 503, 524, 702, 799, 882
Cac8I	GCNNGC	1 cut(s)	684
CaiI	CAGNNNCTG	1 cut(s)	1106
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	1051
CsiI	ACCWGGT	1 cut(s)	1213
Csp6I	GTAC	3 cut(s)	325, 623, 1220
CviAII	CATG	5 cut(s)	128, 544, 1121, 1157, 1263
CviQI	GTAC	3 cut(s)	325, 623, 1220
DdeI	CTNAG	3 cut(s)	506, 644, 728
DpnI	GATC	5 cut(s)	113, 642, 785, 878, 1138
DpnII	GATC	5 cut(s)	111, 640, 783, 876, 1136
DrdI	GACNNNNNNGTC	1 cut(s)	973
DseDI	GACNNNNNNGTC	1 cut(s)	973
EaeI	YGGCCR	1 cut(s)	991
Eco130I	CCWWGG	3 cut(s)	127, 171, 1028
Eco31I	GGTCTC	2 cut(s)	34, 920
Eco32I	GATATC	1 cut(s)	778
Eco47I	GGWCC	1 cut(s)	1051
Eco57I	CTGAAG	1 cut(s)	946
EcoRII	CCWGG	1 cut(s)	1213
EcoRV	GATATC	1 cut(s)	778
EcoT14I	CCWWGG	3 cut(s)	127, 171, 1028
EcoT22I	ATGCAT	2 cut(s)	334, 1122
ErhI	CCWWGG	3 cut(s)	127, 171, 1028
FaeI	CATG	5 cut(s)	131, 547, 1124, 1160, 1266
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FatI	CATG	5 cut(s)	127, 543, 1120, 1156, 1262
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	2 cut(s)	680, 835
FokI	GGATG	2 cut(s)	758, 1060
Fsp4HI	GCNGC	2 cut(s)	680, 835
FspBI	CTAG	2 cut(s)	134, 674
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	2 cut(s)	680, 835
HaeIII	GGCC	1 cut(s)	993
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	5 cut(s)	131, 547, 1124, 1160, 1266
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	1022
HindII	GTYRAC	1 cut(s)	1022
HindIII	AAGCTT	1 cut(s)	863
HinfI	GANTC	6 cut(s)	239, 500, 524, 732, 770, 974
HphI	GGTGA	4 cut(s)	22, 509, 589, 871
Hpy166II	GTNNAC	7 cut(s)	271, 539, 807, 818, 1022, 1090, 1220
Hpy188I	TCNGA	6 cut(s)	238, 647, 731, 775, 1069, 1145
Hpy188III	TCNNGA	5 cut(s)	461, 544, 781, 844, 964
Hpy8I	GTNNAC	7 cut(s)	271, 539, 807, 818, 1022, 1090, 1220
HpyAV	CCTTC	5 cut(s)	85, 284, 375, 458, 898
HpyCH4III	ACNGT	4 cut(s)	339, 519, 627, 1001
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	8 cut(s)	140, 182, 279, 305, 332, 679, 1011, 1120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	871, 1206
HpyF3I	CTNAG	3 cut(s)	506, 644, 728
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	5 cut(s)	131, 547, 1124, 1160, 1266
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	5 cut(s)	111, 640, 783, 876, 1136
Lsp1109I	GCAGC	2 cut(s)	691, 821
LweI	GCATC	3 cut(s)	341, 436, 923
MabI	ACCWGGT	1 cut(s)	1213
MaeI	CTAG	2 cut(s)	134, 674
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	5 cut(s)	224, 314, 497, 1108, 1123
MalI	GATC	5 cut(s)	113, 642, 785, 878, 1138
MboI	GATC	5 cut(s)	111, 640, 783, 876, 1136
MboII	GAAGA	4 cut(s)	398, 778, 949, 952
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	706, 801
MluCI	AATT	6 cut(s)	71, 141, 231, 424, 790, 1239
MlyI	GAGTC	3 cut(s)	494, 533, 983
MnlI	CCTC	4 cut(s)	6, 402, 550, 705
Mph1103I	ATGCAT	2 cut(s)	334, 1122
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	3 cut(s)	251, 717, 1034
MslI	CAYNNNNRTG	2 cut(s)	337, 987
MspR9I	CCNGG	1 cut(s)	1215
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	876
MvaI	CCWGG	1 cut(s)	1215
MvnI	CGCG	1 cut(s)	451
MwoI	GCNNNNNNNGC	2 cut(s)	871, 1206
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	5 cut(s)	111, 640, 783, 876, 1136
NlaIII	CATG	5 cut(s)	131, 547, 1124, 1160, 1266
NlaIV	GGNNCC	1 cut(s)	1208
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	2 cut(s)	334, 1122
NspI	RCATGY	1 cut(s)	1124
PagI	TCATGA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PctI	GAATGC	1 cut(s)	876
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	239, 732, 770
PkrI	GCNGC	2 cut(s)	681, 836
PleI	GAGTC	3 cut(s)	494, 532, 982
PpsI	GAGTC	3 cut(s)	494, 532, 982
PsiI	TTATAA	1 cut(s)	1079
Psp6I	CCWGG	1 cut(s)	1213
PspGI	CCWGG	1 cut(s)	1213
PspN4I	GGNNCC	1 cut(s)	1208
PspPI	GGNCC	1 cut(s)	1051
PsrI	GAACNNNNNNTAC	2 cut(s)	238, 270
PstNI	CAGNNNCTG	1 cut(s)	1106
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	3 cut(s)	326, 624, 1221
RsaNI	GTAC	3 cut(s)	325, 623, 1220
RseI	CAYNNNNRTG	2 cut(s)	337, 987
SaqAI	TTAA	3 cut(s)	251, 717, 1034
SatI	GCNGC	2 cut(s)	680, 835
Sau3AI	GATC	5 cut(s)	111, 640, 783, 876, 1136
Sau96I	GGNCC	1 cut(s)	1051
SchI	GAGTC	3 cut(s)	494, 533, 983
ScrFI	CCNGG	1 cut(s)	1215
SduI	GDGCHC	2 cut(s)	706, 801
SexAI	ACCWGGT	1 cut(s)	1213
SfaNI	GCATC	3 cut(s)	341, 436, 923
SinI	GGWCC	1 cut(s)	1051
SmiMI	CAYNNNNRTG	2 cut(s)	337, 987
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	6 cut(s)	71, 141, 231, 424, 790, 1239
SspMI	CTAG	2 cut(s)	134, 674
StyD4I	CCNGG	1 cut(s)	1213
StyI	CCWWGG	3 cut(s)	127, 171, 1028
TaaI	ACNGT	4 cut(s)	339, 519, 627, 1001
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	735
TaqII	GACCGA	1 cut(s)	651
TasI	AATT	6 cut(s)	71, 141, 231, 424, 790, 1239
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	239, 732, 770
Tru1I	TTAA	3 cut(s)	251, 717, 1034
Tru9I	TTAA	3 cut(s)	251, 717, 1034
TscAI	CASTG	6 cut(s)	342, 510, 524, 702, 806, 889
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	679, 834
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	7 cut(s)	104, 138, 303, 324, 591, 917, 1251
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	6 cut(s)	342, 510, 524, 702, 806, 889
VpaK11BI	GGWCC	1 cut(s)	1051
XapI	RAATTY	3 cut(s)	71, 231, 1239
XceI	RCATGY	1 cut(s)	1124
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	134, 674
Zsp2I	ATGCAT	2 cut(s)	334, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.