Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Reverse (-)

1015458 .. 1018450

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGATGAAGCTGGTGAGGAATGTTAATTGGGATTGGTTTGTTCAATTCAGGCCTTTCTACAAAAGGGTTTTGAATTTCGGTAATGAGATGATGAAGGGTCATTGTAAAATCTTGGTTTTTCAAACTTTCAATGGATTAGTTGCAATTGGCTCATTGGTGTTCTTTGTTGTTGCAATGTCTTGTGCCTTTTTGTATTTGTTTCCCAGTGTTCCCCCAGTGGTTAATAGTTACCCGGTTTCGAATTCCAGTAGTAGTTCTATTGATGAATGTGATGTTTTCGAAGGAAGGTGGATTCAAGATGAAAGTTACCCGTTGTACAATGCCTCAGAATGCCCATTTGCAGAAATTGGATTTAATTGCCTTGCTAATGGGCGGAAAGATAGGGGTTATGCCAAGTGGAGGTGGAAGCCAAAGAATTGTGATATTCCTAGGTTTGATGTGCGGGCGGTTCTTGAAAAACTTCGTGGAAAGAGGATTGTTTTTGTTGGCGATTCGTTGAGTAGAACACAGTGGGAGTCTTTGATATGTTTACTCATGACAGGGGTGGAGGATAAGAAGAGTGTTTACGAAGTGAATGGGAAAAAAATCACTAAGCAGATTAGATTCTTATCGGTACACTTTAGTTCATTTGACCTCAGAATTGATTTCTATCGGTCAGTTTTCCTAGTACAGCCTGCTTCAGTTCCAATCCGATCACCAAAGAGGGTTAAATCAACTCTCAGAGTTGACAAGTTGGATGACATTAGCCAAGAATGGATCGATTCTGATATTTTGATTTTCAATTCAGGTCACTGGTGGACACCAAGTAAACTTTTTGACATGGGCTGCTATTTTCAAGTGGGTAAATCTCTGAAGCTTGGAATGCCAATCACCACGGGGTTCAGGATAGCTTTAAACACTTGGTCGTCTTGGGTTGAGACCATGGTCAACACAAATAGGACAAGTGTATTCTTCAGGACTTTTGAGTCATCGCATTGGAGTGGCCGAAAGCACAATTCGTGCAAAGTGACTCAACACCCTTGGTCAAGCTCATGGGGAAAGGACCGAAGCACAATTTCGGACATCATTATAAAGATTGTGAAAAAAATGAAGGTTCCTGTGACAATTCTACACGTTACACCTATGTTATCATTCCGTAGTGATGGGCATGTGGGTACCTGGAGCGATAATCCATCAGTCCCTGATTGTAGCCATTGGTGCCTACCTGGCGTACCTGATATGTGGAATGAAATTCTCTTGAACCTGCTACCCAGGAATCAGGTTTCCCTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

425

Amino Acids

48.93

Weight (kDa)

9.42

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
AasI	GACNNNNNNGTC	1 cut(s)	964
Acc36I	ACCTGC	1 cut(s)	1251
Acc65I	GGTACC	1 cut(s)	1154
AccB1I	GGYRCC	2 cut(s)	1154, 1197
AciI	CCGC	3 cut(s)	373, 442, 446
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	982
AcsI	RAATTY	3 cut(s)	73, 241, 1230
AcuI	CTGAAG	3 cut(s)	663, 872, 937
AfaI	GTAC	5 cut(s)	317, 615, 669, 1156, 1212
AfiI	CCNNNNNNNGG	1 cut(s)	399
AflIII	ACRYGT	1 cut(s)	1111
AgsI	TTSAA	9 cut(s)	44, 73, 122, 130, 296, 455, 781, 836, 1240
AjnI	CCWGG	3 cut(s)	1157, 1204, 1250
AluBI	AGCT	4 cut(s)	10, 856, 890, 1029
AluI	AGCT	4 cut(s)	10, 856, 890, 1029
Alw26I	GTCTC	1 cut(s)	911
AlwI	GGATC	1 cut(s)	764
AlwNI	CAGNNNCTG	1 cut(s)	1181
AoxI	GGCC	2 cut(s)	50, 982
ApeKI	GCWGC	1 cut(s)	825
ApoI	RAATTY	3 cut(s)	73, 241, 1230
Asp700I	GAANNNNTTC	1 cut(s)	459
Asp718I	GGTACC	1 cut(s)	1154
AspA2I	CCTAGG	1 cut(s)	428
AspS9I	GGNCC	1 cut(s)	1042
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	3 cut(s)	25, 687, 862
AsuII	TTCGAA	2 cut(s)	239, 279
AvaII	GGWCC	1 cut(s)	1042
AvrII	CCTAGG	1 cut(s)	428
BanI	GGYRCC	2 cut(s)	1154, 1197
BarI	GAAGNNNNNNTAC	2 cut(s)	548, 580
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	2 cut(s)	1136, 1180
BciT130I	CCWGG	3 cut(s)	1159, 1206, 1252
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	911
BfaI	CTAG	2 cut(s)	429, 665
BfuAI	ACCTGC	1 cut(s)	1251
BglI	GCCNNNNNGGC	1 cut(s)	1206
BisI	GCNGC	1 cut(s)	826
BlnI	CCTAGG	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	827
Bme1390I	CCNGG	4 cut(s)	233, 1159, 1206, 1252
Bme18I	GGWCC	1 cut(s)	1042
BmgT120I	GGNCC	1 cut(s)	1042
BmiI	GGNNCC	3 cut(s)	1095, 1156, 1199
BmrFI	CCNGG	4 cut(s)	233, 1159, 1206, 1252
BmrI	ACTGGG	2 cut(s)	198, 209
BmuI	ACTGGG	2 cut(s)	198, 209
BoxI	GACNNNNGTC	1 cut(s)	923
BpmI	CTGGAG	1 cut(s)	1180
Bpu14I	TTCGAA	2 cut(s)	239, 279
BpuMI	CCSGG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	759
BsaBI	GATNNNNATC	2 cut(s)	607, 648
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	5 cut(s)	428, 873, 921, 1019, 1250
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	4 cut(s)	204, 215, 246, 797
Bse3DI	GCAATG	1 cut(s)	180
Bse8I	GATNNNNATC	2 cut(s)	607, 648
BseBI	CCWGG	3 cut(s)	1159, 1206, 1252
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	5 cut(s)	428, 873, 921, 1019, 1250
BseGI	GGATG	1 cut(s)	742
BseJI	GATNNNNATC	2 cut(s)	607, 648
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	3 cut(s)	339, 649, 733
BseNI	ACTGG	4 cut(s)	204, 215, 246, 797
BseXI	GCAGC	1 cut(s)	812
BshFI	GGCC	2 cut(s)	52, 984
BshNI	GGYRCC	2 cut(s)	1154, 1197
BshVI	ATCGAT	1 cut(s)	759
BsiSI	CCGG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	1163
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	1163
BsmI	GAATGC	2 cut(s)	335, 867
BsnI	GGCC	2 cut(s)	52, 984
Bso31I	GGTCTC	1 cut(s)	911
Bsp119I	TTCGAA	2 cut(s)	239, 279
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	692, 756
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	3 cut(s)	373, 442, 446
BspANI	GGCC	2 cut(s)	52, 984
BspCNI	CTCAG	3 cut(s)	338, 648, 732
BspDI	ATCGAT	1 cut(s)	759
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	1095, 1156, 1199
BspMI	ACCTGC	1 cut(s)	1251
BspPI	GGATC	1 cut(s)	764
BspT104I	TTCGAA	2 cut(s)	239, 279
BspT107I	GGYRCC	2 cut(s)	1154, 1197
BspTNI	GGTCTC	1 cut(s)	911
BsrDI	GCAATG	1 cut(s)	180
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	4 cut(s)	204, 215, 246, 797
BssECI	CCNNGG	5 cut(s)	428, 873, 921, 1019, 1250
BssMI	GATC	2 cut(s)	692, 756
BssT1I	CCWWGG	3 cut(s)	428, 921, 1019
Bst2UI	CCWGG	3 cut(s)	1159, 1206, 1252
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	551
BstAUI	TGTACA	1 cut(s)	315
BstBI	TTCGAA	2 cut(s)	239, 279
BstC8I	GCNNGC	2 cut(s)	444, 675
BstDEI	CTNAG	4 cut(s)	325, 591, 635, 719
BstDSI	CCRYGG	2 cut(s)	873, 921
BstF5I	GGATG	1 cut(s)	742
BstKTI	GATC	2 cut(s)	695, 759
BstMAI	GTCTC	1 cut(s)	911
BstMBI	GATC	2 cut(s)	692, 756
BstMWI	GCNNNNNNNGC	3 cut(s)	862, 1197, 1206
BstNI	CCWGG	3 cut(s)	1159, 1206, 1252
BstNSI	RCATGY	1 cut(s)	1151
BstPAI	GACNNNNGTC	1 cut(s)	923
BstSCI	CCNGG	4 cut(s)	231, 1157, 1204, 1250
BstV1I	GCAGC	1 cut(s)	812
Bsu15I	ATCGAT	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	52, 984
BsuTUI	ATCGAT	1 cut(s)	759
BtgI	CCRYGG	2 cut(s)	873, 921
BtgZI	GCGATG	1 cut(s)	954
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	4 cut(s)	211, 222, 515, 790
BveI	ACCTGC	1 cut(s)	1251
Cac8I	GCNNGC	2 cut(s)	444, 675
CaiI	CAGNNNCTG	1 cut(s)	1181
CciI	TCATGA	1 cut(s)	534
Cfr13I	GGNCC	1 cut(s)	1042
ClaI	ATCGAT	1 cut(s)	759
Csp6I	GTAC	5 cut(s)	316, 614, 668, 1155, 1211
CviAII	CATG	5 cut(s)	535, 820, 922, 1032, 1148
CviQI	GTAC	5 cut(s)	316, 614, 668, 1155, 1211
DdeI	CTNAG	4 cut(s)	325, 591, 635, 719
DpnI	GATC	2 cut(s)	694, 758
DpnII	GATC	2 cut(s)	692, 756
DraI	TTTAAA	1 cut(s)	894
DrdI	GACNNNNNNGTC	1 cut(s)	964
DseDI	GACNNNNNNGTC	1 cut(s)	964
EaeI	YGGCCR	1 cut(s)	982
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	388
Eco130I	CCWWGG	3 cut(s)	428, 921, 1019
Eco147I	AGGCCT	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	911
Eco47I	GGWCC	1 cut(s)	1042
Eco57I	CTGAAG	3 cut(s)	663, 872, 937
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	3 cut(s)	1157, 1204, 1250
EcoT14I	CCWWGG	3 cut(s)	428, 921, 1019
ErhI	CCWWGG	3 cut(s)	428, 921, 1019
FaeI	CATG	5 cut(s)	538, 823, 925, 1035, 1151
FaqI	GGGAC	1 cut(s)	1163
FatI	CATG	5 cut(s)	534, 819, 921, 1031, 1147
FauI	CCCGC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	826
FokI	GGATG	1 cut(s)	749
Fsp4HI	GCNGC	1 cut(s)	826
FspBI	CTAG	2 cut(s)	429, 665
GluI	GCNGC	1 cut(s)	826
GsuI	CTGGAG	1 cut(s)	1180
HaeIII	GGCC	2 cut(s)	52, 984
HapII	CCGG	1 cut(s)	233
Hin1II	CATG	5 cut(s)	538, 823, 925, 1035, 1151
HincII	GTYRAC	2 cut(s)	727, 928
HindII	GTYRAC	2 cut(s)	727, 928
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	8 cut(s)	292, 491, 515, 603, 761, 965, 1009, 1255
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	25, 687, 862
Hpy166II	GTNNAC	7 cut(s)	530, 565, 616, 727, 798, 809, 928
Hpy188I	TCNGA	7 cut(s)	328, 638, 692, 722, 766, 852, 1060
Hpy188III	TCNNGA	6 cut(s)	296, 452, 535, 883, 955, 1237
Hpy8I	GTNNAC	7 cut(s)	530, 565, 616, 727, 798, 809, 928
HpyAV	CCTTC	4 cut(s)	88, 275, 279, 1084
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4IV	ACGT	1 cut(s)	1113
HpyCH4V	TGCA	4 cut(s)	143, 173, 341, 1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	862, 1197, 1206
HpyF3I	CTNAG	4 cut(s)	325, 591, 635, 719
HpySE526I	ACGT	1 cut(s)	1113
Hsp92II	CATG	5 cut(s)	538, 823, 925, 1035, 1151
KpnI	GGTACC	1 cut(s)	1158
Kzo9I	GATC	2 cut(s)	692, 756
LmnI	GCTCC	1 cut(s)	1161
Lsp1109I	GCAGC	1 cut(s)	812
MaeI	CTAG	2 cut(s)	429, 665
MaeII	ACGT	1 cut(s)	1113
MaeIII	GTNAC	6 cut(s)	227, 305, 788, 1006, 1099, 1114
MalI	GATC	2 cut(s)	694, 758
MboI	GATC	2 cut(s)	692, 756
MboII	GAAGA	2 cut(s)	568, 943
MfeI	CAATTG	1 cut(s)	144
MlyI	GAGTC	3 cut(s)	524, 974, 1003
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	7 cut(s)	9, 334, 393, 465, 541, 644, 696
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	6 cut(s)	24, 222, 354, 708, 893, 1269
MslI	CAYNNNNRTG	1 cut(s)	978
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	4 cut(s)	233, 1159, 1206, 1252
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	2 cut(s)	335, 867
MvaI	CCWGG	3 cut(s)	1159, 1206, 1252
MwoI	GCNNNNNNNGC	3 cut(s)	862, 1197, 1206
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	2 cut(s)	692, 756
NlaIII	CATG	5 cut(s)	538, 823, 925, 1035, 1151
NlaIV	GGNNCC	3 cut(s)	1095, 1156, 1199
NmuCI	GTSAC	3 cut(s)	788, 1006, 1099
NspI	RCATGY	1 cut(s)	1151
NspV	TTCGAA	2 cut(s)	239, 279
PagI	TCATGA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	52
PctI	GAATGC	2 cut(s)	335, 867
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	5 cut(s)	292, 491, 603, 761, 1255
PkrI	GCNGC	1 cut(s)	827
PleI	GAGTC	3 cut(s)	523, 973, 1003
PpsI	GAGTC	3 cut(s)	523, 973, 1003
PshAI	GACNNNNGTC	1 cut(s)	923
PsiI	TTATAA	1 cut(s)	1070
Psp6I	CCWGG	3 cut(s)	1157, 1204, 1250
PspGI	CCWGG	3 cut(s)	1157, 1204, 1250
PspN4I	GGNNCC	3 cut(s)	1095, 1156, 1199
PspPI	GGNCC	1 cut(s)	1042
PstNI	CAGNNNCTG	1 cut(s)	1181
RsaI	GTAC	5 cut(s)	317, 615, 669, 1156, 1212
RsaNI	GTAC	5 cut(s)	316, 614, 668, 1155, 1211
RseI	CAYNNNNRTG	1 cut(s)	978
SaqAI	TTAA	6 cut(s)	24, 222, 354, 708, 893, 1269
SatI	GCNGC	1 cut(s)	826
Sau3AI	GATC	2 cut(s)	692, 756
Sau96I	GGNCC	1 cut(s)	1042
SchI	GAGTC	3 cut(s)	524, 974, 1003
ScrFI	CCNGG	4 cut(s)	233, 1159, 1206, 1252
SfuI	TTCGAA	2 cut(s)	239, 279
SinI	GGWCC	1 cut(s)	1042
SmiMI	CAYNNNNRTG	1 cut(s)	978
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	3 cut(s)	373, 442, 446
SspMI	CTAG	2 cut(s)	429, 665
StuI	AGGCCT	1 cut(s)	52
StyD4I	CCNGG	4 cut(s)	231, 1157, 1204, 1250
StyI	CCWWGG	3 cut(s)	428, 921, 1019
TaaI	ACNGT	1 cut(s)	510
TaiI	ACGT	1 cut(s)	1116
TaqI	TCGA	3 cut(s)	239, 279, 759
TaqII	GACCGA	2 cut(s)	642, 1059
TatI	WGTACW	2 cut(s)	315, 667
TfiI	GAWTC	5 cut(s)	292, 491, 603, 761, 1255
Tru1I	TTAA	6 cut(s)	24, 222, 354, 708, 893, 1269
Tru9I	TTAA	6 cut(s)	24, 222, 354, 708, 893, 1269
TscAI	CASTG	4 cut(s)	211, 222, 515, 797
TseFI	GTSAC	3 cut(s)	788, 1006, 1099
TseI	GCWGC	1 cut(s)	825
Tsp45I	GTSAC	3 cut(s)	788, 1006, 1099
TspDTI	ATGAA	7 cut(s)	20, 107, 279, 315, 615, 1103, 1242
TspGWI	ACGGA	1 cut(s)	1124
TspRI	CASTG	4 cut(s)	211, 222, 515, 797
VpaK11BI	GGWCC	1 cut(s)	1042
XapI	RAATTY	3 cut(s)	73, 241, 1230
XceI	RCATGY	1 cut(s)	1151
XmaJI	CCTAGG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	2 cut(s)	429, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.