Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011301.1

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Reverse (-)

8 .. 841

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011301.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggagatggtgaggaatatttattgggactcgtttgcccaattcaggtctttctacaaacgggttttgaattttggcaatgagatgatgaagggttattggaaagtttggatctttcaaactttccatggactagttgcaattggttcattgctgtcctttgttgtagccatggcatttgcatatatgtatttgtttcccaccgttccctcggtagttcgaagttacgggatttcgaattcagctagttcgaattcaagtagttccgtagagaagtgcaatgtttatgaaggaagctggattgcagatgaaagttaccctttgtacaatgcatcactgtgtccatttgcagaacgtggatttaattgcttggctaatggaagggaagataggggttatgccaagtggaggtggaagcctaagaattgtgatattccaagattcgatgcgcgtaaagttcttgaagggcttcgtggaaaacgagttgtttttgtgggtgactcgctaagtagaacacagtgggagtctttgatatgtttactcatgacaggggtggaggataagaagagtgtttatgaagtgaatgggaataaaatcaccaagcagattagatttttatcggtacggtttacaacatttgatctcagaatggacttttaccggtcagttttcctagtgcagcgtgcttcaaagccagcgcgagcaccaaagagggttaagtcgacactcagaatcaacaggatagatgacattagcaaagaatggattgattcagatattttgatcttcaattcagggcactggtggacaccgagtaaactttttgaactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

277

Amino Acids

32.26

Weight (kDa)

9.62

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	722
AccII	CGCG	2 cut(s)	451, 700
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	3 cut(s)	70, 238, 253
AfaI	GTAC	2 cut(s)	326, 624
AfiI	CCNNNNNNNGG	2 cut(s)	45, 408
AgeI	ACCGGT	1 cut(s)	660
AgsI	TTSAA	7 cut(s)	70, 119, 258, 464, 690, 790, 827
AhlI	ACTAGT	1 cut(s)	133
AluBI	AGCT	2 cut(s)	245, 297
AluI	AGCT	2 cut(s)	245, 297
Alw21I	GWGCWC	1 cut(s)	706
AlwI	GGATC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	679
ApoI	RAATTY	3 cut(s)	70, 238, 253
AsiGI	ACCGGT	1 cut(s)	660
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	451, 700
AsuHPI	GGTGA	3 cut(s)	22, 509, 589
AsuII	TTCGAA	3 cut(s)	220, 236, 251
BaeGI	GKGCMC	1 cut(s)	801
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	1 cut(s)	691
BcuI	ACTAGT	1 cut(s)	133
BfaI	CTAG	3 cut(s)	134, 246, 674
BisI	GCNGC	1 cut(s)	680
BlsI	GCNGC	1 cut(s)	681
BmsI	GCATC	2 cut(s)	341, 436
Bpu14I	TTCGAA	3 cut(s)	220, 236, 251
BsaBI	GATNNNNATC	1 cut(s)	616
BsaJI	CCNNGG	3 cut(s)	127, 171, 210
BsaWI	WCCGGW	1 cut(s)	660
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 408
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	806
Bse3DI	GCAATG	3 cut(s)	85, 149, 286
Bse8I	GATNNNNATC	1 cut(s)	616
BseDI	CCNNGG	3 cut(s)	127, 171, 210
BseJI	GATNNNNATC	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	45, 408
BseMI	GCAATG	3 cut(s)	85, 149, 286
BseMII	CTCAG	2 cut(s)	658, 742
BseNI	ACTGG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	801
BseXI	GCAGC	1 cut(s)	691
BsgI	GTGCAG	1 cut(s)	698
Bsh1236I	CGCG	2 cut(s)	451, 700
BshTI	ACCGGT	1 cut(s)	660
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	661
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	45, 408
BsmFI	GGGAC	1 cut(s)	41
Bsp119I	TTCGAA	3 cut(s)	220, 236, 251
Bsp1286I	GDGCHC	2 cut(s)	706, 801
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	111, 640, 783
Bsp19I	CCATGG	2 cut(s)	127, 171
BspCNI	CTCAG	2 cut(s)	657, 741
BspFNI	CGCG	2 cut(s)	451, 700
BspHI	TCATGA	1 cut(s)	543
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	3 cut(s)	220, 236, 251
BsrDI	GCAATG	3 cut(s)	85, 149, 286
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	806
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	3 cut(s)	127, 171, 210
BssMI	GATC	3 cut(s)	111, 640, 783
BssT1I	CCWWGG	2 cut(s)	127, 171
Bst4CI	ACNGT	5 cut(s)	205, 339, 519, 627, 831
Bst6I	CTCTTC	1 cut(s)	560
BstAUI	TGTACA	1 cut(s)	324
BstBI	TTCGAA	3 cut(s)	220, 236, 251
BstC8I	GCNNGC	3 cut(s)	684, 696, 702
BstDEI	CTNAG	4 cut(s)	420, 506, 644, 728
BstDSI	CCRYGG	2 cut(s)	127, 171
BstFNI	CGCG	2 cut(s)	451, 700
BstHHI	GCGC	2 cut(s)	451, 700
BstKTI	GATC	3 cut(s)	114, 643, 786
BstMBI	GATC	3 cut(s)	111, 640, 783
BstSLI	GKGCMC	1 cut(s)	801
BstUI	CGCG	2 cut(s)	451, 700
BstV1I	GCAGC	1 cut(s)	691
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BtgI	CCRYGG	2 cut(s)	127, 171
BtsIMutI	CAGTG	3 cut(s)	335, 524, 799
Cac8I	GCNNGC	3 cut(s)	684, 696, 702
CciI	TCATGA	1 cut(s)	543
CfoI	GCGC	2 cut(s)	451, 700
Cfr10I	RCCGGY	1 cut(s)	660
Csp6I	GTAC	2 cut(s)	325, 623
CspAI	ACCGGT	1 cut(s)	660
CviAII	CATG	3 cut(s)	128, 172, 544
CviJI	RGCY	7 cut(s)	170, 245, 297, 374, 418, 469, 694
CviKI_1	RGCY	7 cut(s)	170, 245, 297, 374, 418, 469, 694
CviQI	GTAC	2 cut(s)	325, 623
DdeI	CTNAG	4 cut(s)	420, 506, 644, 728
DpnI	GATC	3 cut(s)	113, 642, 785
DpnII	GATC	3 cut(s)	111, 640, 783
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	127, 171
EcoRI	GAATTC	2 cut(s)	238, 253
EcoT14I	CCWWGG	2 cut(s)	127, 171
EcoT22I	ATGCAT	1 cut(s)	334
ErhI	CCWWGG	2 cut(s)	127, 171
FaeI	CATG	3 cut(s)	131, 175, 547
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	3 cut(s)	127, 171, 543
FblI	GTMKAC	1 cut(s)	722
Fnu4HI	GCNGC	1 cut(s)	680
Fsp4HI	GCNGC	1 cut(s)	680
FspBI	CTAG	3 cut(s)	134, 246, 674
GlaI	GCGC	2 cut(s)	450, 699
GluI	GCNGC	1 cut(s)	680
HapII	CCGG	1 cut(s)	661
HhaI	GCGC	2 cut(s)	451, 700
Hin1II	CATG	3 cut(s)	131, 175, 547
Hin6I	GCGC	2 cut(s)	449, 698
HinP1I	GCGC	2 cut(s)	449, 698
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
HinfI	GANTC	6 cut(s)	29, 441, 500, 524, 732, 770
HpaII	CCGG	1 cut(s)	661
HphI	GGTGA	3 cut(s)	22, 509, 589
Hpy166II	GTNNAC	5 cut(s)	539, 630, 723, 807, 818
Hpy188I	TCNGA	3 cut(s)	647, 731, 775
Hpy188III	TCNNGA	2 cut(s)	461, 544
Hpy8I	GTNNAC	5 cut(s)	539, 630, 723, 807, 818
HpyAV	CCTTC	4 cut(s)	85, 284, 375, 458
HpyCH4III	ACNGT	5 cut(s)	205, 339, 519, 627, 831
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	7 cut(s)	140, 182, 279, 305, 332, 350, 679
HpyF3I	CTNAG	4 cut(s)	420, 506, 644, 728
HpySE526I	ACGT	1 cut(s)	355
Hsp92II	CATG	3 cut(s)	131, 175, 547
HspAI	GCGC	2 cut(s)	449, 698
Kzo9I	GATC	3 cut(s)	111, 640, 783
LpnPI	CCDG	8 cut(s)	31, 283, 534, 674, 708, 724, 780, 787
Lsp1109I	GCAGC	1 cut(s)	691
LweI	GCATC	2 cut(s)	341, 436
MaeI	CTAG	3 cut(s)	134, 246, 674
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	224, 314, 497
MalI	GATC	3 cut(s)	113, 642, 785
MboI	GATC	3 cut(s)	111, 640, 783
MboII	GAAGA	3 cut(s)	398, 577, 778
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	706, 801
MluCI	AATT	8 cut(s)	41, 70, 141, 238, 253, 364, 424, 790
MlyI	GAGTC	3 cut(s)	23, 494, 533
MnlI	CCTC	5 cut(s)	6, 220, 402, 550, 705
Mph1103I	ATGCAT	1 cut(s)	334
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	2 cut(s)	363, 717
MslI	CAYNNNNRTG	1 cut(s)	337
MspI	CCGG	1 cut(s)	661
MunI	CAATTG	1 cut(s)	141
MvnI	CGCG	2 cut(s)	451, 700
NcoI	CCATGG	2 cut(s)	127, 171
NdeII	GATC	3 cut(s)	111, 640, 783
NlaIII	CATG	3 cut(s)	131, 175, 547
NmuCI	GTSAC	1 cut(s)	497
NsiI	ATGCAT	1 cut(s)	334
NspV	TTCGAA	3 cut(s)	220, 236, 251
PagI	TCATGA	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	3 cut(s)	441, 732, 770
PinAI	ACCGGT	1 cut(s)	660
PkrI	GCNGC	1 cut(s)	681
PleI	GAGTC	3 cut(s)	23, 494, 532
PpsI	GAGTC	3 cut(s)	23, 494, 532
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	2 cut(s)	326, 624
RsaNI	GTAC	2 cut(s)	325, 623
RseI	CAYNNNNRTG	1 cut(s)	337
SalI	GTCGAC	1 cut(s)	721
SaqAI	TTAA	2 cut(s)	363, 717
SatI	GCNGC	1 cut(s)	680
Sau3AI	GATC	3 cut(s)	111, 640, 783
SchI	GAGTC	3 cut(s)	23, 494, 533
SduI	GDGCHC	2 cut(s)	706, 801
SetI	ASST	5 cut(s)	50, 247, 299, 358, 413
SfaNI	GCATC	2 cut(s)	341, 436
SfuI	TTCGAA	3 cut(s)	220, 236, 251
SmiMI	CAYNNNNRTG	1 cut(s)	337
SpeI	ACTAGT	1 cut(s)	133
Sse9I	AATT	8 cut(s)	41, 70, 141, 238, 253, 364, 424, 790
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	3 cut(s)	134, 246, 674
StyI	CCWWGG	2 cut(s)	127, 171
TaaI	ACNGT	5 cut(s)	205, 339, 519, 627, 831
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	5 cut(s)	220, 236, 251, 444, 722
TasI	AATT	8 cut(s)	41, 70, 141, 238, 253, 364, 424, 790
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	441, 732, 770
Tru1I	TTAA	2 cut(s)	363, 717
Tru9I	TTAA	2 cut(s)	363, 717
TscAI	CASTG	3 cut(s)	342, 524, 806
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	1 cut(s)	679
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	5 cut(s)	104, 138, 303, 324, 591
TspGWI	ACGGA	1 cut(s)	256
TspRI	CASTG	3 cut(s)	342, 524, 806
XapI	RAATTY	3 cut(s)	70, 238, 253
XmiI	GTMKAC	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	3 cut(s)	134, 246, 674
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.