Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

38009783 .. 38013614

Gene Structure 3832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG310000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGATGGAGACAATGAGCAATTCAAGTAGGACTACGTCGTTCAGCCCGACTACATCATTCAATAGGAGCACATCATTCAATAGAAGTACATCATTCAAATCAAGAACCCCGACTGTAGCAAGCCCAACCGTCAGTCAATCTAGCTGGGTGTCGCGGGTTACTCCATTTAGCTGGGTCTCGCGTTGGTTTCACACACTCATAGTGATTTTCACATTCATTTCGTTTCTCATTGCCGTTTATGGGGGTTATCTATATGTGATGCCAAGTCTCAACCTGACTTTTCATGGTTATGGTGTTTTGGAACCTGCTCAGTCGATAAGCAGTTGCAATATGTTTGATGGAAGTTGGGTTGTTGATGATAATTACCCATTGTACAATGCTACAGAGTGTCCCTTTGTGGAGCAGGGGTTCAATTGTTTGGCTAATGGTCGAAGAGATAAGGATTATCTGAAATATAGGTGGAAACCCAATAATTGTGATATACCAAGATTTAATGTGCAGAGTATATTGGACAAGCTTAGAGGAAAAAGAGTTGTTTTTGTGGGGGATTCTATGAGTAGAACACAGTGGGAGTCACTAATTTGCTTGCTCATGACTGGGGTGGAGGATAAGAAGAGTGTCTACGAAGTCAACGGGAATAAGATTACCAAACAGATCAGATATTTGGGTGCTCGCTTCAGTTCCTTCAATTTTACTGTCGAGTTCTTTCGATCAGTTTTCCTGGTTCAACAGGGTTGGATGCCTAGACATGCTCCAAAGAGGGTCAAGTCTATACTAAAGTTGGACAAGTTAGATAACATTAGCAATCAGTGGATTAATTCAGATGTTCTGATATTCAACACGGGACAGTGGTGGGTTCCAGGAAAACTCTTTGACACGGGTTGCTATTTCCAGGTTGGAAACTCACTAAAGCTTGGAATGTCAATTCCTACTGCCTTTAGAACAGCACTGGATACTTGGGCAGCTTGGGTTGAGGAAAAGATCGCCACTAACAGAACTCATGTCTTTTTTCGGACTTTTGAGCCCTCTCACTGGAGGTATTCCTTAGATATGGTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

353

Amino Acids

40.78

Weight (kDa)

9.53

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	108 - 160	1.5e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	161 - 346	3.8e-59	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	621
AccII	CGCG	2 cut(s)	154, 181
AciI	CCGC	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	661
AfaI	GTAC	2 cut(s)	88, 374
AfiI	CCNNNNNNNGG	2 cut(s)	240, 1032
AgsI	TTSAA	8 cut(s)	24, 61, 79, 97, 412, 688, 728, 838
AjnI	CCWGG	3 cut(s)	720, 859, 891
AloI	GAACNNNNNNTCC	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	144, 171, 517, 913, 965
AluI	AGCT	5 cut(s)	144, 171, 517, 913, 965
Alw21I	GWGCWC	2 cut(s)	71, 673
Alw26I	GTCTC	3 cut(s)	2, 181, 272
ApeKI	GCWGC	1 cut(s)	962
AseI	ATTAAT	1 cut(s)	816
BanII	GRGCYC	1 cut(s)	1026
BarI	GAAGNNNNNNTAC	2 cut(s)	605, 637
Bbv12I	GWGCWC	2 cut(s)	71, 673
BbvI	GCAGC	1 cut(s)	974
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	3 cut(s)	722, 861, 893
BciVI	GTATCC	1 cut(s)	946
BcoDI	GTCTC	3 cut(s)	2, 181, 272
BfaI	CTAG	2 cut(s)	141, 744
BfmI	CTRYAG	2 cut(s)	114, 381
BfuAI	ACCTGC	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	1 cut(s)	963
BlsI	GCNGC	1 cut(s)	964
Bme1390I	CCNGG	3 cut(s)	722, 861, 893
BmiI	GGNNCC	2 cut(s)	303, 858
BmrFI	CCNGG	3 cut(s)	722, 861, 893
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	2 cut(s)	249, 729
BmuI	ACTGGG	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	1054
BsaI	GGTCTC	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 1032
Bse1I	ACTGG	3 cut(s)	601, 954, 1037
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	3 cut(s)	722, 861, 893
BseGI	GGATG	1 cut(s)	744
BseLI	CCNNNNNNNGG	2 cut(s)	240, 1032
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	3 cut(s)	601, 954, 1037
BseXI	GCAGC	1 cut(s)	974
BseYI	CCCAGC	2 cut(s)	144, 171
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	154, 181
BsiHKAI	GWGCWC	2 cut(s)	71, 673
BslFI	GGGAC	2 cut(s)	375, 858
BslI	CCNNNNNNNGG	2 cut(s)	240, 1032
BsmAI	GTCTC	3 cut(s)	2, 181, 272
BsmFI	GGGAC	2 cut(s)	375, 858
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	3 cut(s)	71, 673, 1026
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	654, 710, 981
BspACI	CCGC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	154, 181
BspHI	TCATGA	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	303, 858
BspMI	ACCTGC	1 cut(s)	313
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	372
BsrI	ACTGG	3 cut(s)	601, 954, 1037
BssMI	GATC	3 cut(s)	654, 710, 981
Bst2UI	CCWGG	3 cut(s)	722, 861, 893
Bst4CI	ACNGT	5 cut(s)	115, 130, 567, 697, 849
Bst6I	CTCTTC	2 cut(s)	427, 608
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	121, 587, 673
BstDEI	CTNAG	3 cut(s)	309, 518, 1045
BstF5I	GGATG	1 cut(s)	744
BstFNI	CGCG	2 cut(s)	154, 181
BstKTI	GATC	3 cut(s)	657, 713, 984
BstMAI	GTCTC	3 cut(s)	2, 181, 272
BstMBI	GATC	3 cut(s)	654, 710, 981
BstNI	CCWGG	3 cut(s)	722, 861, 893
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	3 cut(s)	720, 859, 891
BstSFI	CTRYAG	2 cut(s)	114, 381
BstUI	CGCG	2 cut(s)	154, 181
BstV1I	GCAGC	1 cut(s)	974
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuI	GTATCC	1 cut(s)	946
BtsCI	GGATG	1 cut(s)	744
BtsIMutI	CAGTG	5 cut(s)	572, 815, 854, 947, 1030
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	3 cut(s)	121, 587, 673
CciI	TCATGA	1 cut(s)	591
Csp6I	GTAC	2 cut(s)	87, 373
CviAII	CATG	5 cut(s)	284, 592, 749, 1001, 1059
CviJI	RGCY	9 cut(s)	45, 123, 144, 171, 422, 517, 913, 965, 1024
CviKI_1	RGCY	9 cut(s)	45, 123, 144, 171, 422, 517, 913, 965, 1024
CviQI	GTAC	2 cut(s)	87, 373
DdeI	CTNAG	3 cut(s)	309, 518, 1045
DpnI	GATC	3 cut(s)	656, 712, 983
DpnII	GATC	3 cut(s)	654, 710, 981
Eam1104I	CTCTTC	2 cut(s)	427, 608
EarI	CTCTTC	2 cut(s)	427, 608
Eco24I	GRGCYC	1 cut(s)	1026
Eco31I	GGTCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	661
EcoRII	CCWGG	3 cut(s)	720, 859, 891
EcoT38I	GRGCYC	1 cut(s)	1026
FaeI	CATG	5 cut(s)	287, 595, 752, 1004, 1062
FaqI	GGGAC	2 cut(s)	375, 858
FatI	CATG	5 cut(s)	283, 591, 748, 1000, 1058
FauI	CCCGC	1 cut(s)	147
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	963
FokI	GGATG	1 cut(s)	751
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	1 cut(s)	963
FspBI	CTAG	2 cut(s)	141, 744
GluI	GCNGC	1 cut(s)	963
GsaI	CCCAGC	2 cut(s)	148, 175
GsuI	CTGGAG	1 cut(s)	1054
Hin1II	CATG	5 cut(s)	287, 595, 752, 1004, 1062
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	2 cut(s)	515, 911
HinfI	GANTC	2 cut(s)	548, 572
Hpy166II	GTNNAC	2 cut(s)	622, 631
Hpy188I	TCNGA	5 cut(s)	450, 659, 823, 831, 1014
Hpy188III	TCNNGA	2 cut(s)	102, 592
Hpy8I	GTNNAC	2 cut(s)	622, 631
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	1 cut(s)	694
HpyCH4III	ACNGT	5 cut(s)	115, 130, 567, 697, 849
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	2 cut(s)	327, 499
HpyF3I	CTNAG	3 cut(s)	309, 518, 1045
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	287, 595, 752, 1004, 1062
Kzo9I	GATC	3 cut(s)	654, 710, 981
LmnI	GCTCC	3 cut(s)	66, 400, 757
Lsp1109I	GCAGC	1 cut(s)	974
LweI	GCATC	2 cut(s)	249, 729
MaeI	CTAG	2 cut(s)	141, 744
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	157, 573, 1054
MalI	GATC	3 cut(s)	656, 712, 983
MboI	GATC	3 cut(s)	654, 710, 981
MboII	GAAGA	2 cut(s)	444, 625
MfeI	CAATTG	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	71, 673, 1026
MluCI	AATT	8 cut(s)	19, 361, 412, 472, 579, 688, 817, 924
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	3 cut(s)	716, 762, 877
MnlI	CCTC	6 cut(s)	515, 598, 753, 967, 1029, 1036
MseI	TTAA	2 cut(s)	492, 816
MslI	CAYNNNNRTG	1 cut(s)	288
MspR9I	CCNGG	3 cut(s)	722, 861, 893
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	3 cut(s)	722, 861, 893
MvnI	CGCG	2 cut(s)	154, 181
NdeII	GATC	3 cut(s)	654, 710, 981
NlaIII	CATG	5 cut(s)	287, 595, 752, 1004, 1062
NlaIV	GGNNCC	2 cut(s)	303, 858
NmuCI	GTSAC	1 cut(s)	573
NspI	RCATGY	1 cut(s)	752
PagI	TCATGA	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	548
PflFI	GACNNNGTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	859
PkrI	GCNGC	1 cut(s)	964
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	3 cut(s)	720, 859, 891
PspFI	CCCAGC	2 cut(s)	144, 171
PspGI	CCWGG	3 cut(s)	720, 859, 891
PspN4I	GGNNCC	2 cut(s)	303, 858
PsyI	GACNNNGTC	1 cut(s)	34
RsaI	GTAC	2 cut(s)	88, 374
RsaNI	GTAC	2 cut(s)	87, 373
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	492, 816
SatI	GCNGC	1 cut(s)	963
Sau3AI	GATC	3 cut(s)	654, 710, 981
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	3 cut(s)	722, 861, 893
SduI	GDGCHC	3 cut(s)	71, 673, 1026
SfaNI	GCATC	2 cut(s)	249, 729
SfcI	CTRYAG	2 cut(s)	114, 381
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	8 cut(s)	19, 361, 412, 472, 579, 688, 817, 924
SsiI	CCGC	1 cut(s)	154
SspMI	CTAG	2 cut(s)	141, 744
StyD4I	CCNGG	3 cut(s)	720, 859, 891
TaaI	ACNGT	5 cut(s)	115, 130, 567, 697, 849
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	4 cut(s)	314, 430, 699, 709
TasI	AATT	8 cut(s)	19, 361, 412, 472, 579, 688, 817, 924
TatI	WGTACW	2 cut(s)	86, 372
TfiI	GAWTC	1 cut(s)	548
Tru1I	TTAA	2 cut(s)	492, 816
Tru9I	TTAA	2 cut(s)	492, 816
TscAI	CASTG	5 cut(s)	572, 815, 854, 954, 1037
TseFI	GTSAC	1 cut(s)	573
TseI	GCWGC	1 cut(s)	962
Tsp45I	GTSAC	1 cut(s)	573
TspDTI	ATGAA	2 cut(s)	205, 272
TspRI	CASTG	5 cut(s)	572, 815, 854, 954, 1037
Tth111I	GACNNNGTC	1 cut(s)	34
VspI	ATTAAT	1 cut(s)	816
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	2 cut(s)	141, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.