Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004103

Physical Location & Seq

Genomic Coordinates Forward (+)

41746998 .. 41750029

Gene Structure 3032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTGAGGAATGTTTATTGGGACTCGTTTGCCCAATTCAGGTCTTTCTACAAACGGGTTTTGAATTTTGGCAATGAGATGATGAAGGGTTATTGGAAAGTTTGGATCTTTCAAACTTTCCATGGACTAGTTGCAATTGGTTCATTGCTGTCCTTTGTTGTAGCCATGGCATTTGCATATATGTATTTGTTTCCCACCGTTCCCTCGGTAGTTCGAAGTTACGGGATTTCGAATTCAGCTGGTTCGAATTCAAGTAGTTCCGTAGAGAAGTGCAATGTTTATGAAGGAAGCTGGATTGCAGATGAAAGTTACCCTTTGTACAATGCATCACTGTGTCCATTTGCAGAACGTGGATTTAATTGCTTGGCTAATGGAAGGGAAGATAGGGGTTATGCCAAGTGGAGGTGGAAGCCTAAGAATTGTGATATTCCAAGATTCGATGCACGTAAAGTTCTTGAAGGGCTTCGTGGAAAACGAGTTGTTTTTGTGGGTGACTCGCTAAGTAGAACACAGTGGGAGTCTTTGATATGTTTACTCATGACAGGGGTGGAGGATAAGAAGAGTGTTTATGAAGTGAATGGGAATAAAATCACCAAGCAGATTAGATTTTTGTCGGTACGGTTTACAACATTTGATCTCAGAATGGACTTTTACCGGTCAGTTTTCCTAGTGCAGCGTGCTTCAAAGCCAGCGCGAGCACCAAAGAGGGTTAAGTCGACACTCAGAATCAACAGGATAGATGACATTAGCAAAGAATGGATTGATTCAGATATTTTGATCTTCAATTCAGGGCACTGGTGGACACCGAGTAAACTTTTTGAACTGGGCTGCTATTTTCAGGTTGGTAAATCACTGAAGCTTGGAATGCCGATCACCACTGCCTTCAAAAAAGCTATGAACACTTGGGCATCTTGGGTTGAGACCTCAATCAACACAAATAGAACAAGTGTCTTCTTCAGGACTTTTGAGTCATCACATTGGAGTGGCCGACACCGTCATTCTTGCAAAGTGGGTCAACGCCCTTGGTTAAGCTCCTGGGGAATGGACCGAAGCCCAGTTTCAGACACCATTATAAAGGTTGTGAGGAAAATGGCAGTTCCTGTAACAATTATGCATGTTACACCTATGGGAGCATTCCGAAGTGATGGTCATGTGGGTATTTGGAGTGATAATCCATCTGTGCCTGATTGTAGCCATTGGTGCCTACCTGGCGTACCTGATATGTGGAATGAAATTCTCTTGTCATATCTGCTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

419

Amino Acids

48.24

Weight (kDa)

9.67

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	89 - 142	7.1e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	143 - 415	1.2e-84	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48880
fragaria_vesca	FvH4_1g24130 FvH4_2g14650 FvH4_2g14650 FvH4_2g14650
malus_domestica	MD05G1015200.v1.1
prunus_persica	Prupe.8G018900_v2.0.a1 Prupe.8G018900_v2.0.a1
pyrus_communis	pycom05g00830
rosa_chinensis	RchiOBHm_Chr2g0120351 RchiOBHm_Chr6g0277131
rosa_laevigata	RLG00000013329 RLG00000018550
rosa_multiflora	Rmu_sc0005082.1_g000004 Rmu_sc0005082.1_g000006 Rmu_sc0006244.1_g000042 Rmu_sc0011301.1_g000001
rosa_roxburghii	Rroxscaffold_2G00123500 Rroxscaffold_7G00191580
rosa_rugosa	Rorug02G0228600 Rorug02G0228700 Rorug02G0228800 Rorug06G0106500
rosa_samantha	Rh2AG285000 Rh2BG295900 Rh2CG273600 Rh2DG310000 Rh6AG217200 Rh6BG221200 Rh6CG224100 Rh6DG213800
rosa_wichuraiana	Rw2G022870 Rw6G018960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1073
AasI	GACNNNNNNGTC	1 cut(s)	967
AccB1I	GGYRCC	1 cut(s)	1200
AccI	GTMKAC	1 cut(s)	716
AccII	CGCG	1 cut(s)	694
AclWI	GGATC	1 cut(s)	113
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	4 cut(s)	64, 232, 247, 1233
AcuI	CTGAAG	2 cut(s)	875, 940
AfaI	GTAC	3 cut(s)	320, 618, 1215
AfiI	CCNNNNNNNGG	2 cut(s)	39, 402
AgeI	ACCGGT	1 cut(s)	654
AgsI	TTSAA	8 cut(s)	64, 113, 252, 458, 684, 784, 821, 886
AhlI	ACTAGT	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	1034, 1207
AluBI	AGCT	5 cut(s)	239, 291, 859, 893, 1032
AluI	AGCT	5 cut(s)	239, 291, 859, 893, 1032
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	914
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	1100
AoxI	GGCC	1 cut(s)	985
ApeKI	GCWGC	2 cut(s)	673, 828
ApoI	RAATTY	4 cut(s)	64, 232, 247, 1233
ArsI	GACNNNNNNTTYG	2 cut(s)	1132, 1164
AsiGI	ACCGGT	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	1045
AsuHPI	GGTGA	4 cut(s)	16, 503, 583, 865
AsuII	TTCGAA	3 cut(s)	214, 230, 245
AvaII	GGWCC	1 cut(s)	1045
BaeGI	GKGCMC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	1200
BbsI	GAAGAC	1 cut(s)	943
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	685, 815
BccI	CCATC	2 cut(s)	1139, 1183
BciT130I	CCWGG	2 cut(s)	1036, 1209
BcoDI	GTCTC	1 cut(s)	914
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	2 cut(s)	128, 668
BglI	GCCNNNNNGGC	1 cut(s)	1209
BisI	GCNGC	2 cut(s)	674, 829
BlsI	GCNGC	2 cut(s)	675, 830
Bme1390I	CCNGG	2 cut(s)	1036, 1209
Bme18I	GGWCC	1 cut(s)	1045
BmgT120I	GGNCC	1 cut(s)	1045
BmiI	GGNNCC	1 cut(s)	1202
BmrFI	CCNGG	2 cut(s)	1036, 1209
BmrI	ACTGGG	2 cut(s)	833, 1049
BmsI	GCATC	3 cut(s)	335, 430, 917
BmuI	ACTGGG	2 cut(s)	833, 1049
BpiI	GAAGAC	1 cut(s)	943
Bpu14I	TTCGAA	3 cut(s)	214, 230, 245
BsaAI	YACGTR	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	5 cut(s)	121, 165, 204, 1022, 1035
BsaWI	WCCGGW	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 402
Bse118I	RCCGGY	1 cut(s)	654
Bse1I	ACTGG	3 cut(s)	800, 828, 1055
Bse3DI	GCAATG	3 cut(s)	79, 143, 280
BseBI	CCWGG	2 cut(s)	1036, 1209
BseDI	CCNNGG	5 cut(s)	121, 165, 204, 1022, 1035
BseLI	CCNNNNNNNGG	2 cut(s)	39, 402
BseMI	GCAATG	3 cut(s)	79, 143, 280
BseMII	CTCAG	2 cut(s)	652, 736
BseNI	ACTGG	3 cut(s)	800, 828, 1055
BseSI	GKGCMC	1 cut(s)	795
BseXI	GCAGC	2 cut(s)	685, 815
BsgI	GTGCAG	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	1 cut(s)	987
BshNI	GGYRCC	1 cut(s)	1200
BshTI	ACCGGT	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	655
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	39, 402
BsmAI	GTCTC	1 cut(s)	914
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	2 cut(s)	870, 1133
BsnI	GGCC	1 cut(s)	987
Bso31I	GGTCTC	1 cut(s)	914
Bsp119I	TTCGAA	3 cut(s)	214, 230, 245
Bsp1286I	GDGCHC	2 cut(s)	700, 795
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	4 cut(s)	105, 634, 777, 870
Bsp19I	CCATGG	2 cut(s)	121, 165
BspANI	GGCC	1 cut(s)	987
BspCNI	CTCAG	2 cut(s)	651, 735
BspFNI	CGCG	1 cut(s)	694
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	1202
BspPI	GGATC	1 cut(s)	113
BspT104I	TTCGAA	3 cut(s)	214, 230, 245
BspT107I	GGYRCC	1 cut(s)	1200
BspTNI	GGTCTC	1 cut(s)	914
BsrDI	GCAATG	3 cut(s)	79, 143, 280
BsrFI	RCCGGY	1 cut(s)	654
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	800, 828, 1055
BssAI	RCCGGY	1 cut(s)	654
BssECI	CCNNGG	5 cut(s)	121, 165, 204, 1022, 1035
BssMI	GATC	4 cut(s)	105, 634, 777, 870
BssT1I	CCWWGG	3 cut(s)	121, 165, 1022
Bst2UI	CCWGG	2 cut(s)	1036, 1209
Bst4CI	ACNGT	5 cut(s)	199, 333, 513, 621, 995
Bst6I	CTCTTC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	446
BstBI	TTCGAA	3 cut(s)	214, 230, 245
BstC8I	GCNNGC	3 cut(s)	678, 690, 696
BstDEI	CTNAG	4 cut(s)	414, 500, 638, 722
BstDSI	CCRYGG	2 cut(s)	121, 165
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	4 cut(s)	108, 637, 780, 873
BstMAI	GTCTC	1 cut(s)	914
BstMBI	GATC	4 cut(s)	105, 634, 777, 870
BstMWI	GCNNNNNNNGC	3 cut(s)	865, 1200, 1209
BstNI	CCWGG	2 cut(s)	1036, 1209
BstNSI	RCATGY	1 cut(s)	1118
BstSCI	CCNGG	2 cut(s)	1034, 1207
BstSLI	GKGCMC	1 cut(s)	795
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	2 cut(s)	685, 815
BstV2I	GAAGAC	1 cut(s)	943
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	987
BtgI	CCRYGG	2 cut(s)	121, 165
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	5 cut(s)	329, 518, 793, 851, 876
Cac8I	GCNNGC	3 cut(s)	678, 690, 696
CaiI	CAGNNNCTG	1 cut(s)	1100
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	654
Cfr13I	GGNCC	1 cut(s)	1045
Csp6I	GTAC	3 cut(s)	319, 617, 1214
CspAI	ACCGGT	1 cut(s)	654
CviAII	CATG	6 cut(s)	122, 166, 538, 1115, 1151, 1257
CviQI	GTAC	3 cut(s)	319, 617, 1214
DdeI	CTNAG	4 cut(s)	414, 500, 638, 722
DpnI	GATC	4 cut(s)	107, 636, 779, 872
DpnII	GATC	4 cut(s)	105, 634, 777, 870
DrdI	GACNNNNNNGTC	1 cut(s)	967
DseDI	GACNNNNNNGTC	1 cut(s)	967
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Eco130I	CCWWGG	3 cut(s)	121, 165, 1022
Eco31I	GGTCTC	1 cut(s)	914
Eco47I	GGWCC	1 cut(s)	1045
Eco57I	CTGAAG	2 cut(s)	875, 940
EcoRI	GAATTC	2 cut(s)	232, 247
EcoRII	CCWGG	2 cut(s)	1034, 1207
EcoT14I	CCWWGG	3 cut(s)	121, 165, 1022
EcoT22I	ATGCAT	2 cut(s)	328, 1116
ErhI	CCWWGG	3 cut(s)	121, 165, 1022
FaeI	CATG	6 cut(s)	125, 169, 541, 1118, 1154, 1260
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	6 cut(s)	121, 165, 537, 1114, 1150, 1256
FblI	GTMKAC	1 cut(s)	716
Fnu4HI	GCNGC	2 cut(s)	674, 829
Fsp4HI	GCNGC	2 cut(s)	674, 829
FspBI	CTAG	2 cut(s)	128, 668
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	2 cut(s)	674, 829
HaeIII	GGCC	1 cut(s)	987
HapII	CCGG	1 cut(s)	655
HhaI	GCGC	1 cut(s)	694
Hin1II	CATG	6 cut(s)	125, 169, 541, 1118, 1154, 1260
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HincII	GTYRAC	2 cut(s)	717, 1016
HindII	GTYRAC	2 cut(s)	717, 1016
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	7 cut(s)	23, 435, 494, 518, 726, 764, 968
HpaII	CCGG	1 cut(s)	655
HphI	GGTGA	4 cut(s)	16, 503, 583, 865
Hpy166II	GTNNAC	6 cut(s)	533, 624, 717, 801, 812, 1016
Hpy188I	TCNGA	5 cut(s)	641, 725, 769, 1063, 1139
Hpy188III	TCNNGA	3 cut(s)	455, 538, 958
Hpy8I	GTNNAC	6 cut(s)	533, 624, 717, 801, 812, 1016
HpyAV	CCTTC	5 cut(s)	79, 278, 369, 452, 892
HpyCH4III	ACNGT	5 cut(s)	199, 333, 513, 621, 995
HpyCH4IV	ACGT	2 cut(s)	349, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	865, 1200, 1209
HpyF3I	CTNAG	4 cut(s)	414, 500, 638, 722
HpySE526I	ACGT	2 cut(s)	349, 445
Hsp92II	CATG	6 cut(s)	125, 169, 541, 1118, 1154, 1260
HspAI	GCGC	1 cut(s)	692
Kzo9I	GATC	4 cut(s)	105, 634, 777, 870
LmnI	GCTCC	2 cut(s)	1037, 1130
Lsp1109I	GCAGC	2 cut(s)	685, 815
LweI	GCATC	3 cut(s)	335, 430, 917
MaeI	CTAG	2 cut(s)	128, 668
MaeII	ACGT	2 cut(s)	349, 445
MaeIII	GTNAC	5 cut(s)	218, 308, 491, 1102, 1117
MalI	GATC	4 cut(s)	107, 636, 779, 872
MboI	GATC	4 cut(s)	105, 634, 777, 870
MboII	GAAGA	5 cut(s)	392, 571, 772, 943, 946
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	2 cut(s)	700, 795
MlyI	GAGTC	4 cut(s)	17, 488, 527, 977
MnlI	CCTC	6 cut(s)	214, 396, 544, 699, 934, 1077
Mph1103I	ATGCAT	2 cut(s)	328, 1116
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	357, 711, 1028
MslI	CAYNNNNRTG	2 cut(s)	331, 981
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	1 cut(s)	655
MspR9I	CCNGG	2 cut(s)	1036, 1209
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	2 cut(s)	870, 1133
MvaI	CCWGG	2 cut(s)	1036, 1209
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	3 cut(s)	865, 1200, 1209
NcoI	CCATGG	2 cut(s)	121, 165
NdeII	GATC	4 cut(s)	105, 634, 777, 870
NlaIII	CATG	6 cut(s)	125, 169, 541, 1118, 1154, 1260
NlaIV	GGNNCC	1 cut(s)	1202
NmuCI	GTSAC	1 cut(s)	491
NsiI	ATGCAT	2 cut(s)	328, 1116
NspI	RCATGY	1 cut(s)	1118
NspV	TTCGAA	3 cut(s)	214, 230, 245
PagI	TCATGA	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	472
PctI	GAATGC	2 cut(s)	870, 1133
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	3 cut(s)	435, 726, 764
PflFI	GACNNNGTC	1 cut(s)	993
PinAI	ACCGGT	1 cut(s)	654
PkrI	GCNGC	2 cut(s)	675, 830
PleI	GAGTC	4 cut(s)	17, 488, 526, 976
PpsI	GAGTC	4 cut(s)	17, 488, 526, 976
Ppu21I	YACGTR	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	1073
Psp6I	CCWGG	2 cut(s)	1034, 1207
PspGI	CCWGG	2 cut(s)	1034, 1207
PspN4I	GGNNCC	1 cut(s)	1202
PspPI	GGNCC	1 cut(s)	1045
PstNI	CAGNNNCTG	1 cut(s)	1100
PsuI	RGATCY	1 cut(s)	105
PsyI	GACNNNGTC	1 cut(s)	993
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	3 cut(s)	320, 618, 1215
RsaNI	GTAC	3 cut(s)	319, 617, 1214
RseI	CAYNNNNRTG	2 cut(s)	331, 981
SalI	GTCGAC	1 cut(s)	715
SaqAI	TTAA	3 cut(s)	357, 711, 1028
SatI	GCNGC	2 cut(s)	674, 829
Sau3AI	GATC	4 cut(s)	105, 634, 777, 870
Sau96I	GGNCC	1 cut(s)	1045
SchI	GAGTC	4 cut(s)	17, 488, 527, 977
ScrFI	CCNGG	2 cut(s)	1036, 1209
SduI	GDGCHC	2 cut(s)	700, 795
SfaNI	GCATC	3 cut(s)	335, 430, 917
SfuI	TTCGAA	3 cut(s)	214, 230, 245
SinI	GGWCC	1 cut(s)	1045
SmiMI	CAYNNNNRTG	2 cut(s)	331, 981
SpeI	ACTAGT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	128, 668
StyD4I	CCNGG	2 cut(s)	1034, 1207
StyI	CCWWGG	3 cut(s)	121, 165, 1022
TaaI	ACNGT	5 cut(s)	199, 333, 513, 621, 995
TaiI	ACGT	2 cut(s)	352, 448
TaqI	TCGA	5 cut(s)	214, 230, 245, 438, 716
TaqII	GACCGA	1 cut(s)	1062
TatI	WGTACW	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	435, 726, 764
Tru1I	TTAA	3 cut(s)	357, 711, 1028
Tru9I	TTAA	3 cut(s)	357, 711, 1028
TscAI	CASTG	5 cut(s)	336, 518, 800, 858, 883
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	2 cut(s)	673, 828
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	7 cut(s)	98, 132, 297, 318, 585, 911, 1245
TspGWI	ACGGA	1 cut(s)	250
TspRI	CASTG	5 cut(s)	336, 518, 800, 858, 883
Tth111I	GACNNNGTC	1 cut(s)	993
VpaK11BI	GGWCC	1 cut(s)	1045
XapI	RAATTY	4 cut(s)	64, 232, 247, 1233
XceI	RCATGY	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	716
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	128, 668
Zsp2I	ATGCAT	2 cut(s)	328, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.