Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005824

Physical Location & Seq

Genomic Coordinates Reverse (-)

1129775 .. 1132840

Gene Structure 3066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3066 bp

ATGCCTCTCAGACCTCCTCCCTCCAAAGCCTTACACTCCTTCCACCGAAAGCACAGCCTCTCGACTTTTCCATCCGAGTCGGTCTGCCAAGATGGAGACCCTGACTCCCATTACACCCACCTCTTGCAGATGTGTTTGCAGCAATGCAAGTATATCAAAGCCCACAAGGTGTTCGACGAAATGCCTGAGAGGCTGCTGGCTCATGCTTCCAGAACCTGCAAGACTATCCACGCCCGCAGCTTGAAAATTGGCATTGCGTCCAAAGGGTTTCTGGGAAATGCCATTCTGGGTTTTTATGCCAAGTGTGGTAATGTGGGATGTGCCAAGAAGGCATTTAACTGCCTTGAAAGCAAGGATGTGTTTGCTTGGAACTCGGTTTTGTCAATGTATTCAAGTAAGGGATTGGTGGAACAGGTTGTTAGGTTGTTCGGGTCGATGTGGAATGACAGGGTAATGCCGAACGAGTTCACTTTCGCAATGGTTTTGTCTGCTTGTGCGAGATTGGTGGATGTTGAATATGGTAGGCAAGTTCATTGTGGTGTTATTAAGATGGGGTTCGAGTTGAGTTCATTTTGTGAAGGTGCACTCATTGATATGTATGCCAAGGGCAATTGTATAAGTGATGCTCGACAGATATTTGATGGTGTGTTGGAGTTGGATACAGTGGCTTGGACAACAATGATTTCAGGGTATGCCCAAGCTGGCTTGCTTGAGGAGGCACTTAAAGTGTTTAAGGAGATGCAGAGAGTTGGCGGTTTTCTGGACCAGGTAGGTTTTGTGACTGTCATAAATGCGTGTGTTGGTCTAGGTAGGCTAGATGATGCATGTGAGTTGTTTTCCCAGATGCCCAGTCCTAATGTTGTAGCGTGGAATGTGATGATTTCTGGGCATGCCAAGAGAGGCAATGAGGAGGAAGCTGTTAACTTTTTCTTGAGAATGAGGAAAGCTGGCGAAAAACCAACGAGATCCACACTAGGAAGTGTTTTAAGCGCAATTGCTAGTTTAGCTGCTCTAGACATTGGCTTGCTAGTTCATGATATGGCAATAAAACTGGGGTTAGATTCTAATGTTTATGTGGGAAGTTCTTTAATCAATATGTACGCCAAGTGTGATAAGATGGATTCTTCGAAGAAAATATTCGATTATCTACCTGAGAAAAATGTTGTCTTGTGGAATGCAATGCTTGGGGGTTATGCACAAAATGGGTATGCCAGTGAAGTAATAGAATTGTTTTCCAATATGAAGGGGTGTGGTCTTTGCCCTGATGAATTTACGTACACTAGCATTCTTAGCGCATGCTCTAGCTTGGAATATCTAAAAATGGGCTGTCAGTTGCATTCACATATCATCAAGAATCAACTTGCATCAAATTTATATGTGGGAAATGCATTGGTTGATATGTATGCTAAATCAAGGGATCTGAAGGAAGCAAGGAAACAATTTGAGCTCATAAGAGATCGAGACAATATTTCTTGGAATGTAATTATTGTTGGGTACGTACAGGAAGAAAACGAAGATGAGGCTTTCAGTATGTTTCGAAGAATGAATATGCATGGAATTGTGCCTGATGAAGTGTCTTTAGCAAGTATATTAAGTGCATGTGCAAATGTTCAAGCACTAAAGATCGGACAACAAGTCCACAGTCTCTCAGTTAAAAATGGTCTGGAAACAAGCCTTTATTCTGGTAGTTCCCTTATTGACATGTATTCCAAATGTGGGGTCATTGAGGATGCACGTAAAGCTTTCTACTATATGCCCCACTGGAGTGTAGTCTCCGTGAATGCTCTAATTGCTGGTTTTGGTTATAGCAACTTGGAAGAAGCAGTAAATTTGCTTCATGAGATGCAGGACATAGGATTGAATCCAACTGAAATTACTTTTTCAATCCTTTTAGATGCATGTAGTGGGCCTGTGATGTTAACAGTGGGAAGGCAAATCCACAGCATAGTACTAAAGAAAGGGCTTTTGTGTGATGGTGACTTATTGGGTGTCTCTCTCTTAGGCATGTACATGAACTCCCAAGGCAAAATAGATGCAACTATTCTTTTCTCGGAATTCCCAAGGCCAAAAAGCAAAATATTATGGACCGCTATGATCTCAGGACTCAGTCAAAATGATTGTAGCGAGGAGGCGTTACAGTTGTATCGAGAAATGCGTAGCGATAATGCCCTACCTGACCAAGCAACATTTGCCAGTGTTCTTCGAGCATGTGCTGTCATTTCTTCTTTGAAAAATGGTAGAGAGATCCATGCCCTCATTTTTCATACCGGTTTTGATCTGGATGAGTTAACTTGTAGTGCCCTCGTAGACATGTATGCTAAATGTGGGGATATGGAAAGTTCTGTGCATGTTTTTAAAGAAATGGGTACTAAAAATAGTGTCATTTCTTGGAACTCAATGATAGTTGGGTTTGCTAAAAATGGTTATGCAGAAGATGCATTGAAGATCTTTGACGAGATGAGACACTTTCATATTTTGCCTGACGATGTCACATTCCTCGGTGTTCTCACTGCATGTATTCATGCAGGGAAGGTAGCTGAAGGCCGACAGATATATGATTCTATGGTTAATAGGTATAGTATCCAACCCAGGGTCGATCATGTTGCCTGCATGGTTGATCTTCTAGGCCGATGGGGCTCTCTTAAAGAAGCAGAGGAACTTCTTGACAGACTAAATTCAGAACCAAGTGCTATGATTTGGGCCACATTACTTGGTGCTTGCAGATTACATGGAGATTACATAAGGGGACAGCATGCGGCTGAGAAACTCATTGAGTTAGAACCGCAAAATTCTTCAACATATGTGCTGCTTTGTAATATACATGCTGCATCAGGAAACTGGGATGCGGCTAGTTCTTTGAGGAGAGAAATGAAAGAAAAGAAATTGACAAAGGTTCCTGGTTGTAGTTGGATTGTAGTGGGACAGACAACAAATTTGTTTGTTGCTGGGGATAAGTCTCATCCTAATGCTAGTGAAATCATTGCGGCTTTAAAGTATTTGGCCGCAGTAATGAAAGAAGAGGGCTATGTTGATGAGACAGATTCTATCTTTAATGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

1022

Amino Acids

112.89

Weight (kDa)

5.8

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	118 - 167	3.3e-09	PPR repeat family
PPR_1	PF12854	217 - 248	4.7e-08	PPR repeat
PPR_2	PF13041	220 - 251	5.8e-08	PPR repeat family
PPR	PF01535	222 - 251	3e-10	PPR repeat
PPR_2	PF13041	285 - 332	5.9e-09	PPR repeat family
PPR	PF01535	288 - 317	1.1e-06	PPR repeat
PPR_2	PF13041	386 - 434	9.2e-13	PPR repeat family
PPR	PF01535	389 - 419	2.3e-06	PPR repeat
PPR_2	PF13041	488 - 536	6.7e-08	PPR repeat family
PPR_2	PF13041	589 - 635	3.8e-08	PPR repeat family
PPR_2	PF13041	693 - 738	1.7e-08	PPR repeat family
PPR	PF01535	694 - 721	1.7e-06	PPR repeat
PPR_long	PF17177	704 - 855	2e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	793 - 840	3.1e-10	PPR repeat family
PPR	PF01535	795 - 822	6.5e-08	PPR repeat
E_motif	PF20431	912 - 971	3.8e-18	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09040 AT3G09040 AT3G09040 AT3G09040
fragaria_vesca	FvH4_2g14640 FvH4_2g14640
malus_domestica	MD05G1015800.v1.1 MD10G1015600.v1.1
prunus_persica	Prupe.8G019100_v2.0.a1
pyrus_communis	pycom05g00870 pycom10g01020
rosa_chinensis	RchiOBHm_Chr6g0277121
rosa_laevigata	RLG00000013330
rosa_multiflora	Rmu_sc0003539.1_g000006 Rmu_sc0006244.1_g000049
rosa_roxburghii	Rroxscaffold_7G00191600
rosa_rugosa	Rorug06G0106300 Rorug06G0106400 Rorug06G0106500 Rorug06G0106500
rosa_samantha	Rh6AG216500 Rh6AG216800 Rh6AG216900 Rh6BG221100 Rh6CG223800 Rh6DG213700
rosa_wichuraiana	Rw6G018890 Rw6G018920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	2307
AciI	CCGC	8 cut(s)	235, 753, 2088, 2756, 2783, 2846, 2984, 3003
AclWI	GGATC	3 cut(s)	960, 1425, 2239
AcoI	YGGCCR	1 cut(s)	3000
AcsI	RAATTY	7 cut(s)	1268, 1369, 1828, 2054, 2674, 2788, 2932
AcuI	CTGAAG	2 cut(s)	1442, 2559
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	7 cut(s)	1100, 1277, 1496, 1500, 1950, 2009, 2368
AfiI	CCNNNNNNNGG	2 cut(s)	1716, 2590
AflIII	ACRYGT	2 cut(s)	1701, 2310
AgeI	ACCGGT	1 cut(s)	2267
AhdI	GACNNNNNGTC	1 cut(s)	1634
AjnI	CCWGG	3 cut(s)	765, 2588, 2896
AleI	CACNNNNGTG	1 cut(s)	1764
AluBI	AGCT	9 cut(s)	240, 701, 917, 947, 1007, 1305, 1447, 1742, 2537
AluI	AGCT	9 cut(s)	240, 701, 917, 947, 1007, 1305, 1447, 1742, 2537
Alw21I	GWGCWC	2 cut(s)	586, 1449
Alw26I	GTCTC	8 cut(s)	90, 1455, 1649, 1777, 1996, 2455, 2961, 3029
Alw44I	GTGCAC	1 cut(s)	582
AlwI	GGATC	3 cut(s)	960, 1425, 2239
AlwNI	CAGNNNCTG	1 cut(s)	216
AoxI	GGCC	6 cut(s)	1907, 2063, 2542, 2626, 2700, 3000
ApaLI	GTGCAC	1 cut(s)	582
ApeKI	GCWGC	6 cut(s)	139, 193, 237, 1007, 2806, 2825
ApoI	RAATTY	7 cut(s)	1268, 1369, 1828, 2054, 2674, 2788, 2932
ArsI	GACNNNNNNTTYG	4 cut(s)	1704, 1736, 2917, 2949
AsiGI	ACCGGT	1 cut(s)	2267
Asp700I	GAANNNNTTC	2 cut(s)	464, 1136
AspLEI	GCGC	2 cut(s)	992, 1295
AspS9I	GGNCC	4 cut(s)	763, 1907, 2085, 2700
AsuHPI	GGTGA	1 cut(s)	1988
AsuII	TTCGAA	2 cut(s)	1127, 1537
AvaII	GGWCC	2 cut(s)	763, 2085
BaeGI	GKGCMC	2 cut(s)	586, 2302
BaeI	ACNNNNGTAYC	2 cut(s)	2126, 2159
BanII	GRGCYC	2 cut(s)	1449, 2639
BarI	GAAGNNNNNNTAC	2 cut(s)	1818, 1850
Bbv12I	GWGCWC	2 cut(s)	586, 1449
BbvI	GCAGC	6 cut(s)	151, 180, 249, 994, 2793, 2812
BccI	CCATC	7 cut(s)	79, 86, 544, 635, 1111, 1967, 2625
BcgI	CGANNNNNNTGC	2 cut(s)	2585, 2619
BciT130I	CCWGG	3 cut(s)	767, 2590, 2898
BciVI	GTATCC	2 cut(s)	652, 2591
BcoDI	GTCTC	8 cut(s)	90, 1455, 1649, 1777, 1996, 2455, 2961, 3029
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	2 cut(s)	652, 2591
BglI	GCCNNNNNGGC	3 cut(s)	190, 329, 2634
BglII	AGATCT	1 cut(s)	2445
BmcAI	AGTACT	1 cut(s)	1950
Bme1390I	CCNGG	3 cut(s)	767, 2590, 2898
Bme18I	GGWCC	2 cut(s)	763, 2085
BmeRI	GACNNNNNGTC	1 cut(s)	1634
BmgT120I	GGNCC	4 cut(s)	763, 1907, 2085, 2700
BmiI	GGNNCC	1 cut(s)	2895
BmrFI	CCNGG	3 cut(s)	767, 2590, 2898
BmrI	ACTGGG	3 cut(s)	843, 1061, 2848
BmuI	ACTGGG	3 cut(s)	843, 1061, 2848
BpmI	CTGGAG	1 cut(s)	1783
Bpu14I	TTCGAA	2 cut(s)	1127, 1537
BpuEI	CTTGAG	2 cut(s)	731, 952
BsaAI	YACGTR	3 cut(s)	1275, 1498, 1736
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	6 cut(s)	603, 2020, 2060, 2497, 2588, 2589
BsaWI	WCCGGW	1 cut(s)	2267
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 2000, 2030
Bsc4I	CCNNNNNNNGG	2 cut(s)	1716, 2590
Bse118I	RCCGGY	1 cut(s)	2267
Bse1I	ACTGG	6 cut(s)	849, 1056, 1212, 1766, 2193, 2843
Bse3DI	GCAATG	6 cut(s)	149, 252, 483, 910, 1185, 2979
BseBI	CCWGG	3 cut(s)	767, 2590, 2898
BseDI	CCNNGG	6 cut(s)	603, 2020, 2060, 2497, 2588, 2589
BseGI	GGATG	8 cut(s)	71, 323, 361, 514, 1735, 2287, 2848, 2959
BseLI	CCNNNNNNNGG	2 cut(s)	1716, 2590
BseMI	GCAATG	6 cut(s)	149, 252, 483, 910, 1185, 2979
BseMII	CTCAG	7 cut(s)	22, 177, 1143, 1662, 2112, 2119, 2751
BseNI	ACTGG	6 cut(s)	849, 1056, 1212, 1766, 2193, 2843
BseRI	GAGGAG	5 cut(s)	6, 728, 923, 2141, 2875
BseSI	GKGCMC	2 cut(s)	586, 2302
BseXI	GCAGC	6 cut(s)	151, 180, 249, 994, 2793, 2812
BseYI	CCCAGC	1 cut(s)	2945
BshFI	GGCC	6 cut(s)	1909, 2065, 2544, 2628, 2702, 3002
BshTI	ACCGGT	1 cut(s)	2267
BsiHKAI	GWGCWC	2 cut(s)	586, 1449
BsiSI	CCGG	1 cut(s)	2268
BslFI	GGGAC	2 cut(s)	2760, 2934
BslI	CCNNNNNNNGG	2 cut(s)	1716, 2590
BsmAI	GTCTC	8 cut(s)	90, 1455, 1649, 1777, 1996, 2455, 2961, 3029
BsmFI	GGGAC	2 cut(s)	2760, 2934
BsmI	GAATGC	4 cut(s)	1180, 1284, 1336, 1786
BsnI	GGCC	6 cut(s)	1909, 2065, 2544, 2628, 2702, 3002
Bso31I	GGTCTC	1 cut(s)	90
Bsp119I	TTCGAA	2 cut(s)	1127, 1537
Bsp1286I	GDGCHC	4 cut(s)	586, 1449, 2302, 2639
Bsp1407I	TGTACA	1 cut(s)	2007
BspACI	CCGC	8 cut(s)	235, 753, 2088, 2756, 2783, 2846, 2984, 3003
BspANI	GGCC	6 cut(s)	1909, 2065, 2544, 2628, 2702, 3002
BspCNI	CTCAG	7 cut(s)	21, 178, 1144, 1661, 2111, 2118, 2752
BspHI	TCATGA	2 cut(s)	1033, 1837
BspLI	GGNNCC	1 cut(s)	2895
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	3 cut(s)	960, 1425, 2239
BspT104I	TTCGAA	2 cut(s)	1127, 1537
BspTNI	GGTCTC	1 cut(s)	90
BsrDI	GCAATG	6 cut(s)	149, 252, 483, 910, 1185, 2979
BsrFI	RCCGGY	1 cut(s)	2267
BsrGI	TGTACA	1 cut(s)	2007
BsrI	ACTGG	6 cut(s)	849, 1056, 1212, 1766, 2193, 2843
BssAI	RCCGGY	1 cut(s)	2267
BssECI	CCNNGG	6 cut(s)	603, 2020, 2060, 2497, 2588, 2589
BssT1I	CCWWGG	3 cut(s)	603, 2020, 2060
Bst2UI	CCWGG	3 cut(s)	767, 2590, 2898
Bst4CI	ACNGT	5 cut(s)	664, 784, 1643, 1924, 2139
Bst6I	CTCTTC	1 cut(s)	3012
BstAPI	GCANNNNNTGC	2 cut(s)	2189, 2435
BstAUI	TGTACA	1 cut(s)	2007
BstBAI	YACGTR	3 cut(s)	1275, 1498, 1736
BstBI	TTCGAA	2 cut(s)	1127, 1537
BstDEI	CTNAG	9 cut(s)	8, 186, 1152, 1289, 1648, 1999, 2098, 2105, 2760
BstF5I	GGATG	8 cut(s)	71, 323, 361, 514, 1735, 2287, 2848, 2959
BstHHI	GCGC	2 cut(s)	992, 1295
BstMAI	GTCTC	8 cut(s)	90, 1455, 1649, 1777, 1996, 2455, 2961, 3029
BstNI	CCWGG	3 cut(s)	767, 2590, 2898
BstSCI	CCNGG	3 cut(s)	765, 2588, 2896
BstSLI	GKGCMC	2 cut(s)	586, 2302
BstSNI	TACGTA	2 cut(s)	1275, 1498
BstV1I	GCAGC	6 cut(s)	151, 180, 249, 994, 2793, 2812
BstX2I	RGATCY	4 cut(s)	965, 1417, 2244, 2445
BstYI	RGATCY	4 cut(s)	965, 1417, 2244, 2445
BsuI	GTATCC	2 cut(s)	652, 2591
BsuRI	GGCC	6 cut(s)	1909, 2065, 2544, 2628, 2702, 3002
BtsCI	GGATG	8 cut(s)	71, 323, 361, 514, 1735, 2287, 2848, 2959
BtsI	GCAGTG	1 cut(s)	2508
BtsIMutI	CAGTG	6 cut(s)	669, 1219, 1759, 1929, 2200, 2508
BveI	ACCTGC	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	216
CciI	TCATGA	2 cut(s)	1033, 1837
CfoI	GCGC	2 cut(s)	992, 1295
Cfr10I	RCCGGY	1 cut(s)	2267
Cfr13I	GGNCC	4 cut(s)	763, 1907, 2085, 2700
CseI	GACGC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	765
Csp6I	GTAC	7 cut(s)	1099, 1276, 1495, 1499, 1949, 2008, 2367
CspAI	ACCGGT	1 cut(s)	2267
CspCI	CAANNNNNGTGG	2 cut(s)	2692, 2727
CviQI	GTAC	7 cut(s)	1099, 1276, 1495, 1499, 1949, 2008, 2367
DdeI	CTNAG	9 cut(s)	8, 186, 1152, 1289, 1648, 1999, 2098, 2105, 2760
DraI	TTTAAA	2 cut(s)	2356, 2991
DraIII	CACNNNGTG	1 cut(s)	169
DriI	GACNNNNNGTC	1 cut(s)	1634
EaeI	YGGCCR	1 cut(s)	3000
Eam1104I	CTCTTC	1 cut(s)	3012
Eam1105I	GACNNNNNGTC	1 cut(s)	1634
EarI	CTCTTC	1 cut(s)	3012
Ecl136II	GAGCTC	1 cut(s)	1447
Eco105I	TACGTA	2 cut(s)	1275, 1498
Eco130I	CCWWGG	3 cut(s)	603, 2020, 2060
Eco24I	GRGCYC	2 cut(s)	1449, 2639
Eco31I	GGTCTC	1 cut(s)	90
Eco47I	GGWCC	2 cut(s)	763, 2085
Eco53kI	GAGCTC	1 cut(s)	1447
Eco57I	CTGAAG	2 cut(s)	1442, 2559
EcoICRI	GAGCTC	1 cut(s)	1447
EcoRI	GAATTC	1 cut(s)	2054
EcoRII	CCWGG	3 cut(s)	765, 2588, 2896
EcoT14I	CCWWGG	3 cut(s)	603, 2020, 2060
EcoT22I	ATGCAT	5 cut(s)	826, 1390, 1554, 1900, 2440
EcoT38I	GRGCYC	2 cut(s)	1449, 2639
ErhI	CCWWGG	3 cut(s)	603, 2020, 2060
FaqI	GGGAC	2 cut(s)	2760, 2934
FauI	CCCGC	1 cut(s)	242
FauNDI	CATATG	1 cut(s)	2800
FblI	GTMKAC	1 cut(s)	2307
FokI	GGATG	8 cut(s)	58, 330, 368, 521, 1742, 2294, 2855, 2946
FriOI	GRGCYC	2 cut(s)	1449, 2639
GlaI	GCGC	2 cut(s)	991, 1294
GsaI	CCCAGC	1 cut(s)	2949
GsuI	CTGGAG	1 cut(s)	1783
HaeIII	GGCC	6 cut(s)	1909, 2065, 2544, 2628, 2702, 3002
HapII	CCGG	1 cut(s)	2268
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	2 cut(s)	992, 1295
Hin6I	GCGC	2 cut(s)	990, 1293
HinP1I	GCGC	2 cut(s)	990, 1293
HincII	GTYRAC	3 cut(s)	922, 1920, 2289
HindII	GTYRAC	3 cut(s)	922, 1920, 2289
HindIII	AAGCTT	1 cut(s)	1740
HinfI	GANTC	9 cut(s)	77, 104, 1061, 1121, 1354, 1861, 2103, 2558, 3041
HpaI	GTTAAC	3 cut(s)	922, 1920, 2289
HpaII	CCGG	1 cut(s)	2268
HphI	GGTGA	1 cut(s)	1988
Hpy166II	GTNNAC	8 cut(s)	468, 584, 922, 1278, 1639, 1920, 2289, 2308
Hpy188I	TCNGA	6 cut(s)	11, 76, 1422, 1628, 2053, 2680
Hpy8I	GTNNAC	8 cut(s)	468, 584, 922, 1278, 1639, 1920, 2289, 2308
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	8 cut(s)	49, 322, 572, 1237, 1417, 1923, 2524, 2534
HpyCH4III	ACNGT	5 cut(s)	664, 784, 1643, 1924, 2139
HpyCH4IV	ACGT	3 cut(s)	1274, 1497, 1735
HpyF3I	CTNAG	9 cut(s)	8, 186, 1152, 1289, 1648, 1999, 2098, 2105, 2760
HpySE526I	ACGT	3 cut(s)	1274, 1497, 1735
HspAI	GCGC	2 cut(s)	990, 1293
KspAI	GTTAAC	3 cut(s)	922, 1920, 2289
Lsp1109I	GCAGC	6 cut(s)	151, 180, 249, 994, 2793, 2812
MabI	ACCWGGT	1 cut(s)	765
MaeII	ACGT	3 cut(s)	1274, 1497, 1735
MaeIII	GTNAC	4 cut(s)	778, 1976, 2133, 2488
MfeI	CAATTG	2 cut(s)	610, 993
MflI	RGATCY	4 cut(s)	965, 1417, 2244, 2445
MhlI	GDGCHC	4 cut(s)	586, 1449, 2302, 2639
MlyI	GAGTC	3 cut(s)	86, 98, 2097
MmeI	TCCRAC	5 cut(s)	630, 636, 1889, 2608, 2888
Mph1103I	ATGCAT	5 cut(s)	826, 1390, 1554, 1900, 2440
MroXI	GAANNNNTTC	2 cut(s)	464, 1136
MslI	CAYNNNNRTG	5 cut(s)	537, 593, 1764, 2009, 2964
MspI	CCGG	1 cut(s)	2268
MspR9I	CCNGG	3 cut(s)	767, 2590, 2898
MunI	CAATTG	2 cut(s)	610, 993
Mva1269I	GAATGC	4 cut(s)	1180, 1284, 1336, 1786
MvaI	CCWGG	3 cut(s)	767, 2590, 2898
NdeI	CATATG	1 cut(s)	2800
NlaIV	GGNNCC	1 cut(s)	2895
NmuCI	GTSAC	3 cut(s)	778, 1976, 2488
NsiI	ATGCAT	5 cut(s)	826, 1390, 1554, 1900, 2440
NspV	TTCGAA	2 cut(s)	1127, 1537
OliI	CACNNNNGTG	1 cut(s)	1764
PaeI	GCATGC	3 cut(s)	893, 1299, 2756
PagI	TCATGA	2 cut(s)	1033, 1837
PasI	CCCWGGG	1 cut(s)	2589
PciI	ACATGT	2 cut(s)	1701, 2310
PcsI	WCGNNNNNNNCGW	1 cut(s)	2152
PctI	GAATGC	4 cut(s)	1180, 1284, 1336, 1786
PdmI	GAANNNNTTC	2 cut(s)	464, 1136
PfeI	GAWTC	6 cut(s)	1061, 1121, 1354, 1861, 2558, 3041
PflFI	GACNNNGTC	2 cut(s)	2106, 2486
PinAI	ACCGGT	1 cut(s)	2267
PleI	GAGTC	3 cut(s)	85, 98, 2097
PpsI	GAGTC	3 cut(s)	85, 98, 2097
Ppu21I	YACGTR	3 cut(s)	1275, 1498, 1736
PscI	ACATGT	2 cut(s)	1701, 2310
Psp124BI	GAGCTC	1 cut(s)	1449
Psp6I	CCWGG	3 cut(s)	765, 2588, 2896
PspFI	CCCAGC	1 cut(s)	2945
PspGI	CCWGG	3 cut(s)	765, 2588, 2896
PspN4I	GGNNCC	1 cut(s)	2895
PspPI	GGNCC	4 cut(s)	763, 1907, 2085, 2700
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	4 cut(s)	965, 1417, 2244, 2445
PsyI	GACNNNGTC	2 cut(s)	2106, 2486
RsaI	GTAC	7 cut(s)	1100, 1277, 1496, 1500, 1950, 2009, 2368
RsaNI	GTAC	7 cut(s)	1099, 1276, 1495, 1499, 1949, 2008, 2367
RseI	CAYNNNNRTG	5 cut(s)	537, 593, 1764, 2009, 2964
SacI	GAGCTC	1 cut(s)	1449
Sau96I	GGNCC	4 cut(s)	763, 1907, 2085, 2700
ScaI	AGTACT	1 cut(s)	1950
SchI	GAGTC	3 cut(s)	86, 98, 2097
ScrFI	CCNGG	3 cut(s)	767, 2590, 2898
SduI	GDGCHC	4 cut(s)	586, 1449, 2302, 2639
SexAI	ACCWGGT	1 cut(s)	765
SfuI	TTCGAA	2 cut(s)	1127, 1537
SinI	GGWCC	2 cut(s)	763, 2085
SmiMI	CAYNNNNRTG	5 cut(s)	537, 593, 1764, 2009, 2964
SmlI	CTYRAG	2 cut(s)	710, 931
SmoI	CTYRAG	2 cut(s)	710, 931
SnaBI	TACGTA	2 cut(s)	1275, 1498
SphI	GCATGC	3 cut(s)	893, 1299, 2756
SsiI	CCGC	8 cut(s)	235, 753, 2088, 2756, 2783, 2846, 2984, 3003
SspI	AATATT	3 cut(s)	1137, 1468, 2079
SstI	GAGCTC	1 cut(s)	1449
StyD4I	CCNGG	3 cut(s)	765, 2588, 2896
StyI	CCWWGG	3 cut(s)	603, 2020, 2060
TaaI	ACNGT	5 cut(s)	664, 784, 1643, 1924, 2139
TaiI	ACGT	3 cut(s)	1277, 1500, 1738
TaqII	GACCGA	1 cut(s)	70
TatI	WGTACW	2 cut(s)	1948, 2007
TauI	GCSGC	4 cut(s)	2759, 2849, 2987, 3005
TfiI	GAWTC	6 cut(s)	1061, 1121, 1354, 1861, 2558, 3041
TscAI	CASTG	6 cut(s)	669, 1219, 1766, 1929, 2200, 2515
TseFI	GTSAC	3 cut(s)	778, 1976, 2488
TseI	GCWGC	6 cut(s)	139, 193, 237, 1007, 2806, 2825
Tsp45I	GTSAC	3 cut(s)	778, 1976, 2488
TspGWI	ACGGA	1 cut(s)	1765
TspRI	CASTG	6 cut(s)	669, 1219, 1766, 1929, 2200, 2515
Tth111I	GACNNNGTC	2 cut(s)	2106, 2486
VneI	GTGCAC	1 cut(s)	582
VpaK11BI	GGWCC	2 cut(s)	763, 2085
XapI	RAATTY	7 cut(s)	1268, 1369, 1828, 2054, 2674, 2788, 2932
XbaI	TCTAGA	1 cut(s)	1012
XcmI	CCANNNNNNNNNTGG	1 cut(s)	268
XmiI	GTMKAC	1 cut(s)	2307
XmnI	GAANNNNTTC	2 cut(s)	464, 1136
ZrmI	AGTACT	1 cut(s)	1950
Zsp2I	ATGCAT	5 cut(s)	826, 1390, 1554, 1900, 2440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.