AT3G10980

Protein of unknown function (DUF2985)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
3438212 .. 3441299
3088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G10980.1

Sequence Viewer

Length: 1692 bp
ATGGGATCTAATTGTGATGGGAATTTGAAAGCAGAGATTGAAGAATCTAATGGTTCTTCTGGCAAAAATACTAAGGTTCCTCCTTGTCCTCTTGATGTTTCTACATCTAGAAGAACTTTGATTGGTGATGGTAAACCTAGGAGATGGTCTATTAGTGCTTTACCTGATGCTTCTAGTAGATTCCAGCTTCTCAAATTTGGTTCTCCTTCTGCTAAGTTCAAGAAAATGGCTGAGGATAGAGACGAGGTTTCACGGTCAGTGACTAGCTCAAGTAACGGAAGCAGTCATAATTTCAGGGAAAGAATCAGTGGCGTGCTTCACCGGAAAATAGATTGGAGTTCTCTGATGAATATGGGGAAAGAATGGATTAGGAATCCTATTAACATGGCTTTATTCGTTTGGATACTTGTTGTTGCAGTCTCTGGTGCTATTCTCTTCATGGTTATGACTGGTATGTTGAATCATGCTTTGCCTAAGAAGTCACAGAGAGATGCTTGGTTTGAAGTTAACAATCAGATTCTTAATGGCTTGTTTACTTTGATGTGTCTTTATCAACATCCCAAACGGTTTTATCACTTAGTGCTTCTTTGTAGATGGAAGCATGATGATATTACTAAGCTTAGGAAAGCTTATTGCAAGGATGGGACTTATAAGCCTAATGAATGGATGCACATTATGGTTGTTGTCATTTTGCTTCACTTGAATTGTTTTGCTCAGTACGCGCTTTGTGGTCTTAATGTTGGATACAGGAGATCAGAGAGACCTCCCATTGGAGTTGCTATATGTATCTCTGCTGCCATTGGAGCTCCTGCGGTTGCGGGTTTGTACACTATACTAAGTCCACTTGGGAAAGATTATAATGATTCTAATGAAGACGAGGAGAATCAACTGAAGCAACGTGAAGAAGGGTCTGTTAATCGTCGGTTTACTTTAGAGAGGAGGTATTCGTTTGCCTCTGCTTCCACGGGGGTTGGGGATGGGATGGTTCCGGTGAGTGATCCTCAGTGGAGTGGTGGAATTTTGGATATTTGGGATGATATTTCATTGGCTTATCTTTCTCTTTTCTGCACTTTCTGTGTCTTTGGATGGAACATGGAGAGAGTTGGGTTTGGGAACATGTATGTTCACATAGCTACGTTTATTCTCTTCTGTTTGGCACCTTTCTTTATATTCAACTTAGCTGCGGTTAATATCGATAATGAGACGGTCAGGGAGGCGTTAGGGATATCTGGAATCCTTCTTTGTGTGTTTGGTTTGCTCTATGGTGGATTCTGGAGAATTCAGATGAGGAAAAGATTCAAATTACCGAGTTATAATTTCTGTTTCGGTAGAGCCGCGATTGCTGATTGTGCGCTCTGGTTATGTTGTTGTTGGTGCTCTTTAGCACAAGAAGTTAGGACTGCAAACTCTTATGAGATAGTGGAAGACAAATTCTGCCAAAGAAAAGAAGAGAAGAATATGGTATCTCCGAATTTGGTATCACCTTTGCCTCGTGAAGACGGTGTGTTTGATCCTCGGTTTGGTCTCGGGAGCTCCCCTAAGAACATAAGTGGAGCTAGTTCTCCTAGCCCGAGCAGGTTTTGGAAAGAGGCACATAGCCCAAATGTACAGACACCTAGAGAGAAAGAAGAGGTTAAAAGCGATGTTGCTCTGACTCCACCTTCTCCTCTGTCTATACACCGAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

563

Amino Acids

63.23

Weight (kDa)

8.74

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2985 PF11204 121 - 199 9.9e-31 Protein of unknown function (DUF2985)
PLAC8 PF04749 336 - 466 8.1e-20 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012162)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 651, 858, 1314
Acc36I ACCTGC 1 cut(s) 1566
AccB1I GGYRCC 1 cut(s) 1156
AccII CGCG 2 cut(s) 722, 1337
AciI CCGC 4 cut(s) 812, 818, 1184, 1335
AclWI GGATC 3 cut(s) 13, 992, 1505
AcsI RAATTY 6 cut(s) 22, 194, 1017, 1278, 1430, 1471
AcuI CTGAAG 1 cut(s) 911
AdeI CACNNNGTG 1 cut(s) 580
AfaI GTAC 3 cut(s) 719, 827, 1608
AfiI CCNNNNNNNGG 2 cut(s) 770, 1520
AflIII ACRYGT 1 cut(s) 1116
AgsI TTSAA 8 cut(s) 28, 41, 220, 460, 503, 703, 1174, 1300
Alw21I GWGCWC 3 cut(s) 808, 1379, 1535
Alw26I GTCTC 5 cut(s) 234, 424, 754, 1196, 1529
AlwI GGATC 3 cut(s) 13, 992, 1505
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 2 cut(s) 1526, 1570
ApeKI GCWGC 2 cut(s) 794, 1181
ApoI RAATTY 6 cut(s) 22, 194, 1017, 1278, 1430, 1471
ArsI GACNNNNNNTTYG 2 cut(s) 1490, 1522
Asp700I GAANNNNTTC 1 cut(s) 1295
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 2 cut(s) 724, 1354
AsuHPI GGTGA 4 cut(s) 137, 311, 1003, 1473
AvaI CYCGRG 2 cut(s) 1526, 1570
AvrII CCTAGG 1 cut(s) 137
BanI GGYRCC 1 cut(s) 1156
BanII GRGCYC 2 cut(s) 808, 1535
BauI CACGAG 1 cut(s) 1491
BbsI GAAGAC 3 cut(s) 879, 1431, 1503
Bbv12I GWGCWC 3 cut(s) 808, 1379, 1535
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 781, 1168
BccI CCATC 8 cut(s) 11, 122, 138, 588, 635, 971, 976, 1080
BciVI GTATCC 2 cut(s) 396, 737
BcoDI GTCTC 5 cut(s) 234, 424, 754, 1196, 1529
BfaI CTAG 7 cut(s) 108, 138, 174, 264, 1557, 1566, 1617
BfuAI ACCTGC 1 cut(s) 1566
BfuI GTATCC 2 cut(s) 396, 737
BisI GCNGC 3 cut(s) 795, 1182, 1335
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 3 cut(s) 796, 1183, 1336
BmeT110I CYCGRG 2 cut(s) 1526, 1570
BmiI GGNNCC 3 cut(s) 78, 987, 1158
BmsI GCATC 3 cut(s) 157, 481, 657
BpiI GAAGAC 3 cut(s) 879, 1431, 1503
BplI GAGNNNNNCTC 2 cut(s) 985, 1017
BpmI CTGGAG 1 cut(s) 1294
Bpu10I CCTNAGC 2 cut(s) 231, 620
BpuEI CTTGAG 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 1194
BsaI GGTCTC 2 cut(s) 754, 1529
BsaJI CCNNGG 3 cut(s) 137, 963, 1514
BsaWI WCCGGW 2 cut(s) 321, 988
Bsc4I CCNNNNNNNGG 2 cut(s) 770, 1520
Bse1I ACTGG 1 cut(s) 454
BseCI ATCGAT 1 cut(s) 1194
BseDI CCNNGG 3 cut(s) 137, 963, 1514
BseGI GGATG 7 cut(s) 556, 646, 672, 982, 987, 1039, 1091
BseLI CCNNNNNNNGG 2 cut(s) 770, 1520
BseMII CTCAG 3 cut(s) 222, 728, 1016
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 3 cut(s) 893, 952, 1656
BseXI GCAGC 2 cut(s) 781, 1168
BsgI GTGCAG 1 cut(s) 1051
Bsh1236I CGCG 2 cut(s) 722, 1337
BshNI GGYRCC 1 cut(s) 1156
BshVI ATCGAT 1 cut(s) 1194
BsiHKAI GWGCWC 3 cut(s) 808, 1379, 1535
BsiHKCI CYCGRG 2 cut(s) 1526, 1570
BsiSI CCGG 2 cut(s) 322, 989
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 2 cut(s) 770, 1520
BsmAI GTCTC 5 cut(s) 234, 424, 754, 1196, 1529
BsmBI CGTCTC 2 cut(s) 234, 1196
BsmFI GGGAC 1 cut(s) 658
Bso31I GGTCTC 2 cut(s) 754, 1529
BsoBI CYCGRG 2 cut(s) 1526, 1570
Bsp1286I GDGCHC 3 cut(s) 808, 1379, 1535
Bsp1407I TGTACA 2 cut(s) 825, 1606
Bsp143I GATC 4 cut(s) 5, 752, 997, 1510
BspACI CCGC 4 cut(s) 812, 818, 1184, 1335
BspCNI CTCAG 3 cut(s) 223, 727, 1015
BspDI ATCGAT 1 cut(s) 1194
BspFNI CGCG 2 cut(s) 722, 1337
BspLI GGNNCC 3 cut(s) 78, 987, 1158
BspMI ACCTGC 1 cut(s) 1566
BspPI GGATC 3 cut(s) 13, 992, 1505
BspT107I GGYRCC 1 cut(s) 1156
BspTNI GGTCTC 2 cut(s) 754, 1529
BsrGI TGTACA 2 cut(s) 825, 1606
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 137, 963, 1514
BssMI GATC 4 cut(s) 5, 752, 997, 1510
BssSI CACGAG 1 cut(s) 1491
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 1 cut(s) 1491
Bst4CI ACNGT 4 cut(s) 255, 567, 1207, 1502
Bst6I CTCTTC 4 cut(s) 440, 1151, 1443, 1623
BstAUI TGTACA 2 cut(s) 825, 1606
BstC8I GCNNGC 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 963
BstF5I GGATG 7 cut(s) 556, 646, 672, 982, 987, 1039, 1091
BstFNI CGCG 2 cut(s) 722, 1337
BstHHI GCGC 2 cut(s) 724, 1354
BstKTI GATC 4 cut(s) 8, 755, 1000, 1513
BstMAI GTCTC 5 cut(s) 234, 424, 754, 1196, 1529
BstMBI GATC 4 cut(s) 5, 752, 997, 1510
BstMWI GCNNNNNNNGC 4 cut(s) 719, 803, 1340, 1349
BstNSI RCATGY 1 cut(s) 1120
BstUI CGCG 2 cut(s) 722, 1337
BstV1I GCAGC 2 cut(s) 781, 1168
BstV2I GAAGAC 3 cut(s) 879, 1431, 1503
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
Bsu15I ATCGAT 1 cut(s) 1194
BsuI GTATCC 2 cut(s) 396, 737
BsuTUI ATCGAT 1 cut(s) 1194
BtgI CCRYGG 1 cut(s) 963
BtgZI GCGATG 1 cut(s) 1656
BtsCI GGATG 7 cut(s) 556, 646, 672, 982, 987, 1039, 1091
BtsIMutI CAGTG 3 cut(s) 264, 313, 1010
BveI ACCTGC 1 cut(s) 1566
Cac8I GCNNGC 1 cut(s) 314
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 2 cut(s) 724, 1354
ClaI ATCGAT 1 cut(s) 1194
Csp6I GTAC 3 cut(s) 718, 826, 1607
CspCI CAANNNNNGTGG 2 cut(s) 952, 987
CviAII CATG 6 cut(s) 385, 439, 464, 602, 1093, 1117
CviQI GTAC 3 cut(s) 718, 826, 1607
DpnI GATC 4 cut(s) 7, 754, 999, 1512
DpnII GATC 4 cut(s) 5, 752, 997, 1510
DraIII CACNNNGTG 1 cut(s) 580
Eam1104I CTCTTC 4 cut(s) 440, 1151, 1443, 1623
EarI CTCTTC 4 cut(s) 440, 1151, 1443, 1623
Ecl136II GAGCTC 2 cut(s) 806, 1533
Eco130I CCWWGG 1 cut(s) 137
Eco24I GRGCYC 2 cut(s) 808, 1535
Eco31I GGTCTC 2 cut(s) 754, 1529
Eco32I GATATC 1 cut(s) 1227
Eco53kI GAGCTC 2 cut(s) 806, 1533
Eco57I CTGAAG 1 cut(s) 911
Eco88I CYCGRG 2 cut(s) 1526, 1570
EcoICRI GAGCTC 2 cut(s) 806, 1533
EcoRI GAATTC 1 cut(s) 1278
EcoRV GATATC 1 cut(s) 1227
EcoT14I CCWWGG 1 cut(s) 137
EcoT38I GRGCYC 2 cut(s) 808, 1535
ErhI CCWWGG 1 cut(s) 137
Esp3I CGTCTC 2 cut(s) 234, 1196
FaeI CATG 6 cut(s) 388, 442, 467, 605, 1096, 1120
FaqI GGGAC 1 cut(s) 658
FatI CATG 6 cut(s) 384, 438, 463, 601, 1092, 1116
FauI CCCGC 1 cut(s) 811
Fnu4HI GCNGC 3 cut(s) 795, 1182, 1335
FokI GGATG 7 cut(s) 543, 653, 679, 989, 994, 1046, 1098
FriOI GRGCYC 2 cut(s) 808, 1535
Fsp4HI GCNGC 3 cut(s) 795, 1182, 1335
FspBI CTAG 7 cut(s) 108, 138, 174, 264, 1557, 1566, 1617
GlaI GCGC 2 cut(s) 723, 1353
GluI GCNGC 3 cut(s) 795, 1182, 1335
GsuI CTGGAG 1 cut(s) 1294
HapII CCGG 2 cut(s) 322, 989
HhaI GCGC 2 cut(s) 724, 1354
Hin1II CATG 6 cut(s) 388, 442, 467, 605, 1096, 1120
Hin6I GCGC 2 cut(s) 722, 1352
HinP1I GCGC 2 cut(s) 722, 1352
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 3 cut(s) 617, 627, 1686
HpaI GTTAAC 1 cut(s) 508
HpaII CCGG 2 cut(s) 322, 989
HphI GGTGA 4 cut(s) 137, 311, 1003, 1473
Hpy166II GTNNAC 7 cut(s) 134, 508, 534, 828, 842, 927, 1126
Hpy188I TCNGA 6 cut(s) 345, 516, 757, 1284, 1470, 1653
Hpy188III TCNNGA 7 cut(s) 92, 108, 220, 1230, 1273, 1493, 1528
Hpy8I GTNNAC 7 cut(s) 134, 508, 534, 828, 842, 927, 1126
Hpy99I CGWCG 1 cut(s) 924
HpyAV CCTTC 4 cut(s) 216, 899, 1247, 1671
HpyCH4III ACNGT 4 cut(s) 255, 567, 1207, 1502
HpyCH4IV ACGT 2 cut(s) 898, 1136
HpyCH4V TGCA 5 cut(s) 416, 636, 670, 1068, 1403
HpyF10VI GCNNNNNNNGC 4 cut(s) 719, 803, 1340, 1349
HpySE526I ACGT 2 cut(s) 898, 1136
Hsp92II CATG 6 cut(s) 388, 442, 467, 605, 1096, 1120
HspAI GCGC 2 cut(s) 722, 1352
KspAI GTTAAC 1 cut(s) 508
Kzo9I GATC 4 cut(s) 5, 752, 997, 1510
LmnI GCTCC 5 cut(s) 803, 811, 1530, 1538, 1553
Lsp1109I GCAGC 2 cut(s) 781, 1168
LweI GCATC 3 cut(s) 157, 481, 657
MaeI CTAG 7 cut(s) 108, 138, 174, 264, 1557, 1566, 1617
MaeII ACGT 2 cut(s) 898, 1136
MaeIII GTNAC 3 cut(s) 259, 272, 480
MalI GATC 4 cut(s) 7, 754, 999, 1512
MboI GATC 4 cut(s) 5, 752, 997, 1510
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 3 cut(s) 808, 1379, 1535
MlyI GAGTC 1 cut(s) 1648
MmeI TCCRAC 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 1295
MseI TTAA 7 cut(s) 381, 507, 522, 735, 915, 1188, 1635
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 2 cut(s) 322, 989
MvnI CGCG 2 cut(s) 722, 1337
MwoI GCNNNNNNNGC 4 cut(s) 719, 803, 1340, 1349
NdeII GATC 4 cut(s) 5, 752, 997, 1510
NlaIII CATG 6 cut(s) 388, 442, 467, 605, 1096, 1120
NlaIV GGNNCC 3 cut(s) 78, 987, 1158
NmuCI GTSAC 2 cut(s) 259, 480
NspI RCATGY 1 cut(s) 1120
PciI ACATGT 1 cut(s) 1116
PdmI GAANNNNTTC 1 cut(s) 1295
PkrI GCNGC 3 cut(s) 796, 1183, 1336
PleI GAGTC 1 cut(s) 1648
PpsI GAGTC 1 cut(s) 1648
PscI ACATGT 1 cut(s) 1116
PsiI TTATAA 3 cut(s) 651, 858, 1314
Psp124BI GAGCTC 2 cut(s) 808, 1535
PspN4I GGNNCC 3 cut(s) 78, 987, 1158
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 3 cut(s) 719, 827, 1608
RsaNI GTAC 3 cut(s) 718, 826, 1607
RseI CAYNNNNRTG 1 cut(s) 443
SacI GAGCTC 2 cut(s) 808, 1535
SaqAI TTAA 7 cut(s) 381, 507, 522, 735, 915, 1188, 1635
SatI GCNGC 3 cut(s) 795, 1182, 1335
Sau3AI GATC 4 cut(s) 5, 752, 997, 1510
SchI GAGTC 1 cut(s) 1648
SduI GDGCHC 3 cut(s) 808, 1379, 1535
SfaNI GCATC 3 cut(s) 157, 481, 657
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SsiI CCGC 4 cut(s) 812, 818, 1184, 1335
SspMI CTAG 7 cut(s) 108, 138, 174, 264, 1557, 1566, 1617
SstI GAGCTC 2 cut(s) 808, 1535
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 4 cut(s) 255, 567, 1207, 1502
TaiI ACGT 2 cut(s) 901, 1139
TaqI TCGA 1 cut(s) 1194
TatI WGTACW 2 cut(s) 825, 1606
TauI GCSGC 1 cut(s) 1337
Tru1I TTAA 7 cut(s) 381, 507, 522, 735, 915, 1188, 1635
Tru9I TTAA 7 cut(s) 381, 507, 522, 735, 915, 1188, 1635
TscAI CASTG 3 cut(s) 264, 313, 1010
TseFI GTSAC 2 cut(s) 259, 480
TseI GCWGC 2 cut(s) 794, 1181
Tsp45I GTSAC 2 cut(s) 259, 480
TspDTI ATGAA 5 cut(s) 362, 427, 675, 885, 1032
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 3 cut(s) 264, 313, 1010
XapI RAATTY 6 cut(s) 22, 194, 1017, 1278, 1430, 1471
XbaI TCTAGA 1 cut(s) 107
XceI RCATGY 1 cut(s) 1120
XmaJI CCTAGG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 1295
XspI CTAG 7 cut(s) 108, 138, 174, 264, 1557, 1566, 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.