FvH4_7g25461

Protein of unknown function (DUF2985)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
19426260 .. 19429095
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25461.t1

Sequence Viewer

Length: 1680 bp
ATGGTTTCGACTGATAATGGAAACCAAAAAGAGGAAATTGAAGGCTCTAATGGTGGTGGAGTGAAGGCTCCGGTTCCGTTTGATAATGTTTCAGTGTCTAAGAGGAATTTGTTGAGCGACGAAAAGCCTCAGAGGAGGTTCCATGATGCTATTTCTGATAGGGTGAAGTTCATGAAATTTGGTTCTGCATCTGCCAGGTTTAAGCGATTAGCTCTGGATAGAGATGAGATTTCGCGCTCGGTGGCTTCGTCAAGTGGACATGGTTTCAAGGAAAGGATCAATGGGGTGTTTTCGAAGAAAATTGATTGGCCTTCGCTTATGAAGATGAGCAAAGTGTGGATTAGAGATCCAATGAACATGGCCCTTTTTCTGTGGATTGCCTGTGTTGCTGTTTCGGGTGCAATTTTGTTTCTTGTCATGACTGGAATGTTGAACCATGCACTGCCAAAGAAGTCCCAGAGAGATGCATGGTTTGAGGTGAATAATCAAATTCTCAATGCACTTTTTACTCTTATGTGTTTGTACCAGCATCCAAAGCGGTTTTACTACCTTGTACTTCTCTGTAGATGGAAACCAGAAGACATTTCTAAACTTAGAAAAATTTACTGTAAAAACGGGACTTATAAGCCACATGAATGGGCACACATGATGGTTGTTGTTGTTCTGCTCCATGTGAATTGCTTTGCACAATATGCATCTTGTGGCTTAAACTTGGGTTACAAAAGATCTGATCGACCAGCCATAGGAGTTGGAATATGTGTAGCTTTTGCAATTGGTGCACCTGCAATTGCTGGTATATACAACATTGTCAGCCCCCTTGGAAAGGATTATGATTCCGACATGGATGAGGAAGCACAGGTTCAGCTCAGCGCTGATGAAGCAGCTGAAAAGTTAAGGTTAAAACGATTAGAGAGAAGGTATTCTTTTGCGTCCCGGGATGAACATCGAAATGTTGAGACTGCTCCAAAATGGAATGGAGGTATACTGGATATTTGGGATGACATTTCTCTTGCATATGTCTCACTGTTCTGTAGCTTTTGTGTATTCGGGTGGAATATGGAAAGACTTGGGTTTGGGAACATGTATGTTCATATCATGACATTTATTCTGTTTTGCATGGCTCCTTTCTGGATCTTTACCTTGGCTTCTGTTAATATTGACAACGAGACTGTACGGGAGGCTCTTGCAGTTACTGGCATTATTCTCTGTGTTTTTGGTTTGCTCTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGATTCAACTTGCCTTCTTATGACTTCTGTTTTGGTAAACCAGCAATGTCTGATTGTGCATTGTGGCTTTTCTGCTGTTGGTGTTCTCTTGCTCAGGAAGTGAGGACAGGGAATTCCTATGACATTGTAGAAGATAAGTTTTGTAGAAAAGAAACTGATATTGGGAGCCAGCTACCAATGTCACCCTTGCCCCGTGAAGATGGAGTGGGTCAACCTAGGTCTGGTCCAAGTTCTCCTTTAGGGAACTACTCAAGCCCAACTAAGACAGGTATGGTTGGTTCTCCAAGTCCTAGCAGATTTTCGAAGGGACTGTATAGTCCAGACAGGGCACTTTCCTCAGTGAAAGAAGAATCTCATCCAACAGGTAAGGATGAAACTATGACCGCACCTGCACCCTCATTGATACAGAGAGAAGCCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

62.89

Weight (kDa)

8.77

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2985 PF11204 113 - 190 1.4e-29 Protein of unknown function (DUF2985)
PLAC8 PF04749 324 - 454 1e-19 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012162)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AarI CACCTGC 2 cut(s) 790, 1654
AasI GACNNNNNNGTC 1 cut(s) 1572
Acc36I ACCTGC 2 cut(s) 790, 1654
AccI GTMKAC 1 cut(s) 982
AccII CGCG 1 cut(s) 235
AciI CCGC 2 cut(s) 538, 1641
AclWI GGATC 5 cut(s) 284, 341, 1139, 1237, 1250
AcsI RAATTY 5 cut(s) 106, 176, 489, 600, 1369
AfaI GTAC 3 cut(s) 524, 555, 1173
AfeI AGCGCT 1 cut(s) 871
AfiI CCNNNNNNNGG 4 cut(s) 31, 743, 823, 1478
AflIII ACRYGT 1 cut(s) 1080
AgsI TTSAA 4 cut(s) 41, 268, 433, 1264
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 2 cut(s) 1401, 1433
AluBI AGCT 6 cut(s) 212, 764, 865, 884, 1035, 1429
AluI AGCT 6 cut(s) 212, 764, 865, 884, 1035, 1429
Alw21I GWGCWC 1 cut(s) 781
Alw26I GTCTC 3 cut(s) 950, 1024, 1160
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 5 cut(s) 284, 341, 1139, 1237, 1250
AlwNI CAGNNNCTG 1 cut(s) 1193
Ama87I CYCGRG 1 cut(s) 933
Aor51HI AGCGCT 1 cut(s) 871
AoxI GGCC 2 cut(s) 308, 360
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 5 cut(s) 106, 176, 489, 600, 1369
ArsI GACNNNNNNTTYG 2 cut(s) 1271, 1303
Asp700I GAANNNNTTC 1 cut(s) 919
AspA2I CCTAGG 1 cut(s) 1472
AspLEI GCGC 2 cut(s) 237, 872
AspS9I GGNCC 2 cut(s) 361, 1481
AsuC2I CCSGG 2 cut(s) 934, 935
AsuHPI GGTGA 3 cut(s) 175, 490, 1431
AsuII TTCGAA 2 cut(s) 293, 1559
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 1 cut(s) 1481
AvrII CCTAGG 1 cut(s) 1472
BaeGI GKGCMC 3 cut(s) 643, 781, 1588
BamHI GGATCC 1 cut(s) 1242
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 893
BccI CCATC 3 cut(s) 561, 643, 1451
BciT130I CCWGG 1 cut(s) 196
BcnI CCSGG 2 cut(s) 934, 935
BcoDI GTCTC 3 cut(s) 950, 1024, 1160
BfaI CTAG 2 cut(s) 1473, 1548
BfmI CTRYAG 2 cut(s) 562, 1030
BfoI RGCGCY 1 cut(s) 873
BfuAI ACCTGC 2 cut(s) 790, 1654
BglII AGATCT 1 cut(s) 725
BisI GCNGC 1 cut(s) 882
BlnI CCTAGG 1 cut(s) 1472
BlpI GCTNAGC 1 cut(s) 866
BlsI GCNGC 1 cut(s) 883
Bme1390I CCNGG 3 cut(s) 196, 934, 935
Bme18I GGWCC 1 cut(s) 1481
BmeT110I CYCGRG 1 cut(s) 933
BmgT120I GGNCC 2 cut(s) 361, 1481
BmiI GGNNCC 6 cut(s) 69, 75, 140, 1122, 1244, 1424
BmrFI CCNGG 3 cut(s) 196, 934, 935
BmsI GCATC 5 cut(s) 136, 197, 454, 538, 704
BpiI GAAGAC 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 1350
Bpu1102I GCTNAGC 1 cut(s) 866
Bpu14I TTCGAA 2 cut(s) 293, 1559
BpuEI CTTGAG 1 cut(s) 1492
BpuMI CCSGG 2 cut(s) 934, 935
BsaBI GATNNNNATC 1 cut(s) 942
BsaJI CCNNGG 4 cut(s) 817, 933, 1140, 1472
BsaWI WCCGGW 1 cut(s) 70
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 743, 823, 1478
Bse1I ACTGG 3 cut(s) 427, 990, 1198
Bse3DI GCAATG 1 cut(s) 1308
Bse8I GATNNNNATC 1 cut(s) 942
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 4 cut(s) 817, 933, 1140, 1472
BseGI GGATG 6 cut(s) 529, 850, 943, 1003, 1612, 1633
BseJI GATNNNNATC 1 cut(s) 942
BseLI CCNNNNNNNGG 4 cut(s) 31, 743, 823, 1478
BseMI GCAATG 1 cut(s) 1308
BseMII CTCAG 4 cut(s) 143, 880, 1364, 1608
BseNI ACTGG 3 cut(s) 427, 990, 1198
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 3 cut(s) 643, 781, 1588
BseXI GCAGC 1 cut(s) 893
BsgI GTGCAG 1 cut(s) 1632
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 310, 362
BsiHKAI GWGCWC 1 cut(s) 781
BsiHKCI CYCGRG 1 cut(s) 933
BsiSI CCGG 2 cut(s) 71, 934
BslFI GGGAC 4 cut(s) 439, 631, 916, 1578
BslI CCNNNNNNNGG 4 cut(s) 31, 743, 823, 1478
BsmAI GTCTC 3 cut(s) 950, 1024, 1160
BsmFI GGGAC 4 cut(s) 439, 631, 916, 1578
BsnI GGCC 2 cut(s) 310, 362
BsoBI CYCGRG 1 cut(s) 933
Bsp119I TTCGAA 2 cut(s) 293, 1559
Bsp1286I GDGCHC 3 cut(s) 643, 781, 1588
Bsp143I GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
Bsp1720I GCTNAGC 1 cut(s) 866
BspACI CCGC 2 cut(s) 538, 1641
BspANI GGCC 2 cut(s) 310, 362
BspCNI CTCAG 4 cut(s) 142, 879, 1363, 1607
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 3 cut(s) 171, 417, 1095
BspLI GGNNCC 6 cut(s) 69, 75, 140, 1122, 1244, 1424
BspMI ACCTGC 2 cut(s) 790, 1654
BspPI GGATC 5 cut(s) 284, 341, 1139, 1237, 1250
BspT104I TTCGAA 2 cut(s) 293, 1559
BsrDI GCAATG 1 cut(s) 1308
BsrI ACTGG 3 cut(s) 427, 990, 1198
BssECI CCNNGG 4 cut(s) 817, 933, 1140, 1472
BssMI GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
BssNAI GTATAC 1 cut(s) 983
BssT1I CCWWGG 3 cut(s) 817, 1140, 1472
Bst1107I GTATAC 1 cut(s) 983
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 4 cut(s) 608, 1026, 1171, 1569
BstAPI GCANNNNNTGC 2 cut(s) 692, 776
BstBI TTCGAA 2 cut(s) 293, 1559
BstC8I GCNNGC 1 cut(s) 1427
BstDEI CTNAG 7 cut(s) 99, 129, 593, 866, 1350, 1518, 1594
BstENI CCTNNNNNAGG 1 cut(s) 821
BstF5I GGATG 6 cut(s) 529, 850, 943, 1003, 1612, 1633
BstFNI CGCG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 873
BstHHI GCGC 2 cut(s) 237, 872
BstKTI GATC 6 cut(s) 279, 349, 728, 733, 1134, 1245
BstMAI GTCTC 3 cut(s) 950, 1024, 1160
BstMBI GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
BstMWI GCNNNNNNNGC 5 cut(s) 386, 535, 692, 776, 878
BstNI CCWGG 1 cut(s) 196
BstNSI RCATGY 1 cut(s) 1084
BstSCI CCNGG 3 cut(s) 194, 932, 933
BstSFI CTRYAG 2 cut(s) 562, 1030
BstSLI GKGCMC 3 cut(s) 643, 781, 1588
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 893
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 4 cut(s) 346, 725, 1131, 1242
BstXI CCANNNNNNTGG 1 cut(s) 636
BstYI RGATCY 4 cut(s) 346, 725, 1131, 1242
BstZ17I GTATAC 1 cut(s) 983
BsuRI GGCC 2 cut(s) 310, 362
BtsCI GGATG 6 cut(s) 529, 850, 943, 1003, 1612, 1633
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 4 cut(s) 99, 440, 1022, 1602
BveI ACCTGC 2 cut(s) 790, 1654
Cac8I GCNNGC 1 cut(s) 1427
CaiI CAGNNNCTG 1 cut(s) 1193
CciI TCATGA 3 cut(s) 171, 417, 1095
CfoI GCGC 2 cut(s) 237, 872
Cfr13I GGNCC 2 cut(s) 361, 1481
Cfr9I CCCGGG 1 cut(s) 933
CseI GACGC 1 cut(s) 918
Csp6I GTAC 3 cut(s) 523, 554, 1172
CviQI GTAC 3 cut(s) 523, 554, 1172
DdeI CTNAG 7 cut(s) 99, 129, 593, 866, 1350, 1518, 1594
DpnI GATC 6 cut(s) 278, 348, 727, 732, 1133, 1244
DpnII GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
DrdI GACNNNNNNGTC 1 cut(s) 1572
DseDI GACNNNNNNGTC 1 cut(s) 1572
Eco130I CCWWGG 3 cut(s) 817, 1140, 1472
Eco47I GGWCC 1 cut(s) 1481
Eco47III AGCGCT 1 cut(s) 871
Eco88I CYCGRG 1 cut(s) 933
EcoNI CCTNNNNNAGG 1 cut(s) 821
EcoRI GAATTC 1 cut(s) 1369
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 3 cut(s) 817, 1140, 1472
EcoT22I ATGCAT 2 cut(s) 469, 697
ErhI CCWWGG 3 cut(s) 817, 1140, 1472
FalI AAGNNNNNCTT 4 cut(s) 907, 939, 1477, 1509
FaqI GGGAC 4 cut(s) 439, 631, 916, 1578
FauNDI CATATG 1 cut(s) 1015
FblI GTMKAC 1 cut(s) 982
Fnu4HI GCNGC 1 cut(s) 882
FokI GGATG 6 cut(s) 516, 857, 950, 1010, 1599, 1640
Fsp4HI GCNGC 1 cut(s) 882
FspBI CTAG 2 cut(s) 1473, 1548
GlaI GCGC 2 cut(s) 236, 871
GluI GCNGC 1 cut(s) 882
HaeII RGCGCY 1 cut(s) 873
HaeIII GGCC 2 cut(s) 310, 362
HapII CCGG 2 cut(s) 71, 934
HgaI GACGC 1 cut(s) 918
HhaI GCGC 2 cut(s) 237, 872
Hin6I GCGC 2 cut(s) 235, 870
HinP1I GCGC 2 cut(s) 235, 870
HincII GTYRAC 1 cut(s) 1469
HindII GTYRAC 1 cut(s) 1469
HinfI GANTC 3 cut(s) 833, 1260, 1607
HpaII CCGG 2 cut(s) 71, 934
HphI GGTGA 3 cut(s) 175, 490, 1431
Hpy166II GTNNAC 5 cut(s) 257, 779, 983, 1295, 1469
Hpy188I TCNGA 5 cut(s) 132, 157, 730, 838, 1309
Hpy188III TCNNGA 7 cut(s) 172, 215, 418, 1096, 1129, 1352, 1577
Hpy8I GTNNAC 5 cut(s) 257, 779, 983, 1295, 1469
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 6 cut(s) 35, 58, 321, 909, 1281, 1555
HpyCH4III ACNGT 4 cut(s) 608, 1026, 1171, 1569
HpyF10VI GCNNNNNNNGC 5 cut(s) 386, 535, 692, 776, 878
HpyF3I CTNAG 7 cut(s) 99, 129, 593, 866, 1350, 1518, 1594
HspAI GCGC 2 cut(s) 235, 870
Kzo9I GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
LmnI GCTCC 5 cut(s) 73, 672, 967, 1126, 1422
Lsp1109I GCAGC 1 cut(s) 893
LweI GCATC 5 cut(s) 136, 197, 454, 538, 704
MaeI CTAG 2 cut(s) 1473, 1548
MaeIII GTNAC 3 cut(s) 716, 1189, 1437
MalI GATC 6 cut(s) 278, 348, 727, 732, 1133, 1244
MboI GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
MboII GAAGA 6 cut(s) 307, 334, 590, 1400, 1466, 1616
MfeI CAATTG 2 cut(s) 771, 786
MflI RGATCY 4 cut(s) 346, 725, 1131, 1242
MhlI GDGCHC 3 cut(s) 643, 781, 1588
MmeI TCCRAC 3 cut(s) 730, 861, 1640
Mph1103I ATGCAT 2 cut(s) 469, 697
MroXI GAANNNNTTC 1 cut(s) 919
MseI TTAA 5 cut(s) 201, 707, 893, 899, 1152
MslI CAYNNNNRTG 2 cut(s) 634, 948
MspA1I CMGCKG 1 cut(s) 884
MspI CCGG 2 cut(s) 71, 934
MspR9I CCNGG 3 cut(s) 196, 934, 935
MunI CAATTG 2 cut(s) 771, 786
MvaI CCWGG 1 cut(s) 196
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 5 cut(s) 386, 535, 692, 776, 878
NciI CCSGG 2 cut(s) 934, 935
NdeI CATATG 1 cut(s) 1015
NdeII GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
NlaIV GGNNCC 6 cut(s) 69, 75, 140, 1122, 1244, 1424
NmuCI GTSAC 1 cut(s) 1437
NsiI ATGCAT 2 cut(s) 469, 697
NspI RCATGY 1 cut(s) 1084
NspV TTCGAA 2 cut(s) 293, 1559
PagI TCATGA 3 cut(s) 171, 417, 1095
PaqCI CACCTGC 2 cut(s) 790, 1654
PciI ACATGT 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 919
PfeI GAWTC 3 cut(s) 833, 1260, 1607
PkrI GCNGC 1 cut(s) 883
PscI ACATGT 1 cut(s) 1080
PsiI TTATAA 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 6 cut(s) 69, 75, 140, 1122, 1244, 1424
PspPI GGNCC 2 cut(s) 361, 1481
PsrI GAACNNNNNNTAC 2 cut(s) 1519, 1551
PstNI CAGNNNCTG 1 cut(s) 1193
PsuI RGATCY 4 cut(s) 346, 725, 1131, 1242
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 3 cut(s) 524, 555, 1173
RsaNI GTAC 3 cut(s) 523, 554, 1172
RseI CAYNNNNRTG 2 cut(s) 634, 948
SaqAI TTAA 5 cut(s) 201, 707, 893, 899, 1152
SatI GCNGC 1 cut(s) 882
Sau3AI GATC 6 cut(s) 276, 346, 725, 730, 1131, 1242
Sau96I GGNCC 2 cut(s) 361, 1481
ScrFI CCNGG 3 cut(s) 196, 934, 935
SduI GDGCHC 3 cut(s) 643, 781, 1588
SfaNI GCATC 5 cut(s) 136, 197, 454, 538, 704
SfcI CTRYAG 2 cut(s) 562, 1030
SfuI TTCGAA 2 cut(s) 293, 1559
SinI GGWCC 1 cut(s) 1481
SmaI CCCGGG 1 cut(s) 935
SmiMI CAYNNNNRTG 2 cut(s) 634, 948
SmlI CTYRAG 1 cut(s) 1507
SmoI CTYRAG 1 cut(s) 1507
SsiI CCGC 2 cut(s) 538, 1641
SspI AATATT 1 cut(s) 1156
SspMI CTAG 2 cut(s) 1473, 1548
StyD4I CCNGG 3 cut(s) 194, 932, 933
StyI CCWWGG 3 cut(s) 817, 1140, 1472
TaaI ACNGT 4 cut(s) 608, 1026, 1171, 1569
TaqI TCGA 5 cut(s) 8, 293, 733, 946, 1559
TatI WGTACW 1 cut(s) 553
TfiI GAWTC 3 cut(s) 833, 1260, 1607
Tru1I TTAA 5 cut(s) 201, 707, 893, 899, 1152
Tru9I TTAA 5 cut(s) 201, 707, 893, 899, 1152
TscAI CASTG 4 cut(s) 99, 447, 1029, 1602
TseFI GTSAC 1 cut(s) 1437
TseI GCWGC 1 cut(s) 881
Tsp45I GTSAC 1 cut(s) 1437
TspDTI ATGAA 9 cut(s) 160, 188, 335, 368, 648, 891, 954, 1079, 1644
TspGWI ACGGA 1 cut(s) 66
TspMI CCCGGG 1 cut(s) 933
TspRI CASTG 4 cut(s) 99, 447, 1029, 1602
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 1481
XagI CCTNNNNNAGG 1 cut(s) 821
XapI RAATTY 5 cut(s) 106, 176, 489, 600, 1369
XceI RCATGY 1 cut(s) 1084
XmaI CCCGGG 1 cut(s) 933
XmaJI CCTAGG 1 cut(s) 1472
XmiI GTMKAC 1 cut(s) 982
XmnI GAANNNNTTC 1 cut(s) 919
XspI CTAG 2 cut(s) 1473, 1548
Zsp2I ATGCAT 2 cut(s) 469, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.