Rmu_sc0000809.1_g000023

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000809.1
OG0012162
Physical Location & Seq
Forward (+)
115146 .. 118083
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000809.1_g000023.1.cds

Sequence Viewer

Length: 1842 bp
atgcatcctccacgagcagtctttttcacaaagccttcaattctgctctcttgtgctcctcctccatttttcagattccttgcttctcttctttcccagagggcacttttcatctgtttatacttgagattccatgcaactctcttgattggaaacattgaagaaaagatggtttcgactgataatggaaaccaaaaagaggaaattgaaggctctaatggtggtggagtgaaggctccagttcccttggacaacctttctgtctctagtaggaatttgttaagcgatgaaaagcctcagaggaggtttcatgatgttatttctgatagggtaaggttcctgaaatttggctctgcatctgccagatttaagcggttagctatggatagagatgagatttcacgctcggtggcttcgccaaggggacatggtttcagagaaaggatcagtggggtcttttccaagaaaattgattggccttcgctcatgaaaatgagcaaagagtggattagagaaccaatgaacatggctctttttctgtggattgcctgtgttgctgtttcaggtgcaattttgtttcttgtcatgactggaatgttgaaccatgcactaccaaagaagtcccagagagatgcatggtttgaggtgaataatcaaattctcaatgcactttttactcttatgtgtttgtaccagcatccaaagcgattttaccaccttgtacttctgtgtagatggaaaccagaagacatttctagactcagaaagatttactgtaaaaatgggacttataagccacatgaatgggcacacatgatggttgttgttgttctgctccatgtgaattgttttgcgcaatatgcgctttgtggtttaaacttgggttacaaaagatctgaacgaccagccataggagttggaatatgtgtatctgttgcaattggtgcacctgcaattgctggtatatacaacattgtcagtccccttgggaaggattatgacatggatgaggaagcgcagcttcagtttaccgctgatgaagcagctgaaaagttgaggttaaagcgattagtgagaaggtattcttttgcatccagggatgaacatcgaatcattgaggctgccccaaaatggactggaggtatactggatatttgggatgacatttctcttgcatatgtctcactgttctgtagcttttgtgtatttgggtggaatatggacagacttgggttcgggaacatgtatgttcatattctgacatttattctgttttgtgtggctcctttctggatctttaacttggctgctgttaatattgacaatgagactgttcgggagtctcttgcagtaactggcattattctctgtgtttttggtttgctctatggtggcttttggaggatccaaatgagaaagagatttaacttgccttcttataacttctgttttggtgaaccggcagtgtctgattgcgcattgtggcttttctgttgttggtgttctcttgctcaggaagtgaggacggggaattcctatgacattgtagaagataagttttgtaaaaaagaaacagatattgggagccagctaccaatgtcacccttgccccgtgaagatggagtgggtcaacttcggtctggtccaagttcgcctttggggaactactcaagcccaactaagaccggcatggttggttctccaagtcctagcagattttcaaagggactgtatagtccagatagggcgctttcttcggtgaaagaagaatctcatccaacaggtaaggatgaaactatgaccgcacctgcaccctcagtgatacaaagagaagccatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

613

Amino Acids

69.14

Weight (kDa)

8.96

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10980 AT5G05350
fragaria_vesca FvH4_7g25461
malus_domestica MD01G1161000.v1.1 MD07G1229000.v1.1
prunus_persica Prupe.2G259100_v2.0.a1
pyrus_communis pycom01g17680 pycom07g20720
rosa_chinensis RchiOBHm_Chr1g0371431
rosa_laevigata RLG00000026963
rosa_multiflora Rmu_sc0000809.1_g000023 Rmu_sc0017835.1_g000001
rosa_roxburghii Rroxscaffold_4G00285690
rosa_rugosa Rorug01G0363900
rosa_samantha Rh1AG374100 Rh1BG337500 Rh1CG350800 Rh1DG368500
rosa_wichuraiana Rw1G032900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 792, 1440
AarI CACCTGC 2 cut(s) 958, 1816
AasI GACNNNNNNGTC 1 cut(s) 1734
Acc16I TGCGCA 2 cut(s) 855, 1477
Acc36I ACCTGC 2 cut(s) 958, 1816
AccI GTMKAC 1 cut(s) 1144
AciI CCGC 3 cut(s) 373, 1032, 1803
AclWI GGATC 4 cut(s) 452, 1301, 1399, 1412
AcsI RAATTY 4 cut(s) 274, 344, 657, 1531
AcuI CTGAAG 1 cut(s) 1007
AfaI GTAC 2 cut(s) 692, 723
AfiI CCNNNNNNNGG 4 cut(s) 199, 911, 991, 1131
AflIII ACRYGT 1 cut(s) 1242
AgsI TTSAA 5 cut(s) 39, 161, 209, 601, 1722
AjnI CCWGG 1 cut(s) 1094
AjuI GAANNNNNNNTTGG 2 cut(s) 1563, 1595
AluBI AGCT 5 cut(s) 380, 1021, 1046, 1197, 1591
AluI AGCT 5 cut(s) 380, 1021, 1046, 1197, 1591
Alw21I GWGCWC 2 cut(s) 58, 949
Alw26I GTCTC 4 cut(s) 268, 1186, 1322, 1347
Alw44I GTGCAC 1 cut(s) 945
AlwI GGATC 4 cut(s) 452, 1301, 1399, 1412
AlwNI CAGNNNCTG 2 cut(s) 1355, 1469
AoxI GGCC 1 cut(s) 476
ApaLI GTGCAC 1 cut(s) 945
ApeKI GCWGC 4 cut(s) 1018, 1043, 1121, 1307
ApoI RAATTY 4 cut(s) 274, 344, 657, 1531
Asp700I GAANNNNTTC 1 cut(s) 1081
AspLEI GCGC 5 cut(s) 856, 865, 1018, 1478, 1750
AspS9I GGNCC 1 cut(s) 1643
AsuHPI GGTGA 4 cut(s) 658, 1466, 1593, 1771
AvaII GGWCC 1 cut(s) 1643
BaeGI GKGCMC 3 cut(s) 106, 811, 949
BamHI GGATCC 1 cut(s) 1404
BauI CACGAG 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 753
Bbv12I GWGCWC 2 cut(s) 58, 949
BbvI GCAGC 4 cut(s) 1030, 1055, 1108, 1294
BccI CCATC 4 cut(s) 163, 729, 811, 1613
BciT130I CCWGG 1 cut(s) 1096
BcoDI GTCTC 4 cut(s) 268, 1186, 1322, 1347
BfaI CTAG 3 cut(s) 267, 756, 1710
BfmI CTRYAG 1 cut(s) 1192
BfoI RGCGCY 1 cut(s) 1751
BfuAI ACCTGC 2 cut(s) 958, 1816
BglII AGATCT 1 cut(s) 893
BisI GCNGC 4 cut(s) 1019, 1044, 1122, 1308
BlsI GCNGC 4 cut(s) 1020, 1045, 1123, 1309
Bme1390I CCNGG 1 cut(s) 1096
Bme18I GGWCC 1 cut(s) 1643
BmgT120I GGNCC 1 cut(s) 1643
BmiI GGNNCC 5 cut(s) 237, 338, 1284, 1406, 1586
BmrFI CCNGG 1 cut(s) 1096
BmsI GCATC 5 cut(s) 13, 365, 622, 706, 1100
BpiI GAAGAC 1 cut(s) 753
BpmI CTGGAG 2 cut(s) 222, 1158
Bpu10I CCTNAGC 1 cut(s) 1512
BpuEI CTTGAG 2 cut(s) 145, 1654
BsaBI GATNNNNATC 1 cut(s) 1104
BsaJI CCNNGG 4 cut(s) 246, 419, 985, 1095
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 911, 991, 1131
Bse118I RCCGGY 2 cut(s) 1459, 1685
Bse1I ACTGG 5 cut(s) 239, 595, 1141, 1152, 1360
Bse8I GATNNNNATC 1 cut(s) 1104
BseBI CCWGG 1 cut(s) 1096
BseDI CCNNGG 4 cut(s) 246, 419, 985, 1095
BseGI GGATG 8 cut(s) 4, 697, 1012, 1091, 1105, 1165, 1774, 1795
BseJI GATNNNNATC 1 cut(s) 1104
BseLI CCNNNNNNNGG 4 cut(s) 199, 911, 991, 1131
BseMII CTCAG 4 cut(s) 311, 775, 1526, 1830
BseNI ACTGG 5 cut(s) 239, 595, 1141, 1152, 1360
BseRI GAGGAG 3 cut(s) 48, 51, 316
BseSI GKGCMC 3 cut(s) 106, 811, 949
BseXI GCAGC 4 cut(s) 1030, 1055, 1108, 1294
BsgI GTGCAG 1 cut(s) 1794
BshFI GGCC 1 cut(s) 478
BsiHKAI GWGCWC 2 cut(s) 58, 949
BsiSI CCGG 2 cut(s) 1460, 1686
BslFI GGGAC 5 cut(s) 438, 607, 799, 966, 1740
BslI CCNNNNNNNGG 4 cut(s) 199, 911, 991, 1131
BsmAI GTCTC 4 cut(s) 268, 1186, 1322, 1347
BsmFI GGGAC 5 cut(s) 438, 607, 799, 966, 1740
BsnI GGCC 1 cut(s) 478
Bsp1286I GDGCHC 4 cut(s) 58, 106, 811, 949
Bsp143I GATC 4 cut(s) 444, 893, 1293, 1404
BspACI CCGC 3 cut(s) 373, 1032, 1803
BspANI GGCC 1 cut(s) 478
BspCNI CTCAG 4 cut(s) 310, 774, 1525, 1829
BspHI TCATGA 3 cut(s) 310, 486, 585
BspLI GGNNCC 5 cut(s) 237, 338, 1284, 1406, 1586
BspMI ACCTGC 2 cut(s) 958, 1816
BspPI GGATC 4 cut(s) 452, 1301, 1399, 1412
BsrFI RCCGGY 2 cut(s) 1459, 1685
BsrI ACTGG 5 cut(s) 239, 595, 1141, 1152, 1360
BssAI RCCGGY 2 cut(s) 1459, 1685
BssECI CCNNGG 4 cut(s) 246, 419, 985, 1095
BssMI GATC 4 cut(s) 444, 893, 1293, 1404
BssNAI GTATAC 1 cut(s) 1145
BssSI CACGAG 1 cut(s) 12
BssT1I CCWWGG 3 cut(s) 246, 419, 985
Bst1107I GTATAC 1 cut(s) 1145
Bst2BI CACGAG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 1096
Bst4CI ACNGT 4 cut(s) 776, 1188, 1333, 1731
Bst6I CTCTTC 1 cut(s) 93
BstAPI GCANNNNNTGC 1 cut(s) 944
BstC8I GCNNGC 1 cut(s) 1589
BstDEI CTNAG 5 cut(s) 297, 761, 1512, 1680, 1816
BstENI CCTNNNNNAGG 1 cut(s) 989
BstF5I GGATG 8 cut(s) 4, 697, 1012, 1091, 1105, 1165, 1774, 1795
BstH2I RGCGCY 1 cut(s) 1751
BstHHI GCGC 5 cut(s) 856, 865, 1018, 1478, 1750
BstKTI GATC 4 cut(s) 447, 896, 1296, 1407
BstMAI GTCTC 4 cut(s) 268, 1186, 1322, 1347
BstMBI GATC 4 cut(s) 444, 893, 1293, 1404
BstMWI GCNNNNNNNGC 6 cut(s) 554, 703, 860, 862, 944, 1040
BstNI CCWGG 1 cut(s) 1096
BstNSI RCATGY 1 cut(s) 1246
BstSCI CCNGG 1 cut(s) 1094
BstSFI CTRYAG 1 cut(s) 1192
BstSLI GKGCMC 3 cut(s) 106, 811, 949
BstV1I GCAGC 4 cut(s) 1030, 1055, 1108, 1294
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 3 cut(s) 893, 1293, 1404
BstXI CCANNNNNNTGG 1 cut(s) 804
BstYI RGATCY 3 cut(s) 893, 1293, 1404
BstZ17I GTATAC 1 cut(s) 1145
BsuRI GGCC 1 cut(s) 478
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 8 cut(s) 4, 697, 1012, 1091, 1105, 1165, 1774, 1795
BtsI GCAGTG 1 cut(s) 1470
BtsIMutI CAGTG 4 cut(s) 454, 1184, 1470, 1824
BveI ACCTGC 2 cut(s) 958, 1816
Cac8I GCNNGC 1 cut(s) 1589
CaiI CAGNNNCTG 2 cut(s) 1355, 1469
CciI TCATGA 3 cut(s) 310, 486, 585
CfoI GCGC 5 cut(s) 856, 865, 1018, 1478, 1750
Cfr10I RCCGGY 2 cut(s) 1459, 1685
Cfr13I GGNCC 1 cut(s) 1643
Csp6I GTAC 2 cut(s) 691, 722
CviQI GTAC 2 cut(s) 691, 722
DdeI CTNAG 5 cut(s) 297, 761, 1512, 1680, 1816
DpnI GATC 4 cut(s) 446, 895, 1295, 1406
DpnII GATC 4 cut(s) 444, 893, 1293, 1404
DraI TTTAAA 1 cut(s) 876
DrdI GACNNNNNNGTC 1 cut(s) 1734
DseDI GACNNNNNNGTC 1 cut(s) 1734
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco130I CCWWGG 3 cut(s) 246, 419, 985
Eco47I GGWCC 1 cut(s) 1643
Eco57I CTGAAG 1 cut(s) 1007
EcoNI CCTNNNNNAGG 1 cut(s) 989
EcoRI GAATTC 1 cut(s) 1531
EcoRII CCWGG 1 cut(s) 1094
EcoT14I CCWWGG 3 cut(s) 246, 419, 985
EcoT22I ATGCAT 2 cut(s) 6, 637
ErhI CCWWGG 3 cut(s) 246, 419, 985
FalI AAGNNNNNCTT 6 cut(s) 1005, 1037, 1069, 1101, 1639, 1671
FaqI GGGAC 5 cut(s) 438, 607, 799, 966, 1740
FauNDI CATATG 1 cut(s) 1177
FblI GTMKAC 1 cut(s) 1144
Fnu4HI GCNGC 4 cut(s) 1019, 1044, 1122, 1308
FokI GGATG 7 cut(s) 684, 1019, 1078, 1112, 1172, 1761, 1802
Fsp4HI GCNGC 4 cut(s) 1019, 1044, 1122, 1308
FspBI CTAG 3 cut(s) 267, 756, 1710
FspI TGCGCA 2 cut(s) 855, 1477
GlaI GCGC 5 cut(s) 855, 864, 1017, 1477, 1749
GluI GCNGC 4 cut(s) 1019, 1044, 1122, 1308
GsuI CTGGAG 2 cut(s) 222, 1158
HaeII RGCGCY 1 cut(s) 1751
HaeIII GGCC 1 cut(s) 478
HapII CCGG 2 cut(s) 1460, 1686
HhaI GCGC 5 cut(s) 856, 865, 1018, 1478, 1750
Hin6I GCGC 5 cut(s) 854, 863, 1016, 1476, 1748
HinP1I GCGC 5 cut(s) 854, 863, 1016, 1476, 1748
HincII GTYRAC 1 cut(s) 1631
HindII GTYRAC 1 cut(s) 1631
HinfI GANTC 6 cut(s) 75, 129, 759, 1110, 1340, 1769
HpaII CCGG 2 cut(s) 1460, 1686
HphI GGTGA 4 cut(s) 658, 1466, 1593, 1771
Hpy166II GTNNAC 5 cut(s) 947, 1029, 1145, 1457, 1631
Hpy188I TCNGA 8 cut(s) 74, 300, 325, 437, 764, 898, 1260, 1471
Hpy8I GTNNAC 5 cut(s) 947, 1029, 1145, 1457, 1631
HpyAV CCTTC 7 cut(s) 45, 203, 226, 489, 985, 1071, 1443
HpyCH4III ACNGT 4 cut(s) 776, 1188, 1333, 1731
HpyF10VI GCNNNNNNNGC 6 cut(s) 554, 703, 860, 862, 944, 1040
HpyF3I CTNAG 5 cut(s) 297, 761, 1512, 1680, 1816
HspAI GCGC 5 cut(s) 854, 863, 1016, 1476, 1748
Kzo9I GATC 4 cut(s) 444, 893, 1293, 1404
LmnI GCTCC 5 cut(s) 61, 241, 840, 1288, 1584
Lsp1109I GCAGC 4 cut(s) 1030, 1055, 1108, 1294
LweI GCATC 5 cut(s) 13, 365, 622, 706, 1100
MaeI CTAG 3 cut(s) 267, 756, 1710
MaeIII GTNAC 3 cut(s) 884, 1351, 1599
MalI GATC 4 cut(s) 446, 895, 1295, 1406
MboI GATC 4 cut(s) 444, 893, 1293, 1404
MboII GAAGA 7 cut(s) 80, 173, 758, 1562, 1628, 1746, 1778
MfeI CAATTG 2 cut(s) 939, 954
MflI RGATCY 3 cut(s) 893, 1293, 1404
MhlI GDGCHC 4 cut(s) 58, 106, 811, 949
MlyI GAGTC 2 cut(s) 753, 1349
MmeI TCCRAC 2 cut(s) 898, 1802
Mph1103I ATGCAT 2 cut(s) 6, 637
MroXI GAANNNNTTC 1 cut(s) 1081
MseI TTAA 7 cut(s) 281, 369, 875, 1061, 1299, 1314, 1425
MslI CAYNNNNRTG 2 cut(s) 491, 802
MspA1I CMGCKG 2 cut(s) 1034, 1046
MspI CCGG 2 cut(s) 1460, 1686
MspR9I CCNGG 1 cut(s) 1096
MssI GTTTAAAC 1 cut(s) 876
MunI CAATTG 2 cut(s) 939, 954
MvaI CCWGG 1 cut(s) 1096
MwoI GCNNNNNNNGC 6 cut(s) 554, 703, 860, 862, 944, 1040
NdeI CATATG 1 cut(s) 1177
NdeII GATC 4 cut(s) 444, 893, 1293, 1404
NlaIV GGNNCC 5 cut(s) 237, 338, 1284, 1406, 1586
NmuCI GTSAC 1 cut(s) 1599
NsbI TGCGCA 2 cut(s) 855, 1477
NsiI ATGCAT 2 cut(s) 6, 637
NspI RCATGY 1 cut(s) 1246
PagI TCATGA 3 cut(s) 310, 486, 585
PaqCI CACCTGC 2 cut(s) 958, 1816
PciI ACATGT 1 cut(s) 1242
PdmI GAANNNNTTC 1 cut(s) 1081
PfeI GAWTC 4 cut(s) 75, 129, 1110, 1769
PkrI GCNGC 4 cut(s) 1020, 1045, 1123, 1309
PleI GAGTC 2 cut(s) 753, 1348
PmeI GTTTAAAC 1 cut(s) 876
PpsI GAGTC 2 cut(s) 753, 1348
PscI ACATGT 1 cut(s) 1242
PsiI TTATAA 2 cut(s) 792, 1440
Psp6I CCWGG 1 cut(s) 1094
PspGI CCWGG 1 cut(s) 1094
PspN4I GGNNCC 5 cut(s) 237, 338, 1284, 1406, 1586
PspPI GGNCC 1 cut(s) 1643
PstNI CAGNNNCTG 2 cut(s) 1355, 1469
PsuI RGATCY 3 cut(s) 893, 1293, 1404
PvuII CAGCTG 1 cut(s) 1046
RsaI GTAC 2 cut(s) 692, 723
RsaNI GTAC 2 cut(s) 691, 722
RseI CAYNNNNRTG 2 cut(s) 491, 802
SaqAI TTAA 7 cut(s) 281, 369, 875, 1061, 1299, 1314, 1425
SatI GCNGC 4 cut(s) 1019, 1044, 1122, 1308
Sau3AI GATC 4 cut(s) 444, 893, 1293, 1404
Sau96I GGNCC 1 cut(s) 1643
SchI GAGTC 2 cut(s) 753, 1349
ScrFI CCNGG 1 cut(s) 1096
SduI GDGCHC 4 cut(s) 58, 106, 811, 949
SfaNI GCATC 5 cut(s) 13, 365, 622, 706, 1100
SfcI CTRYAG 1 cut(s) 1192
SinI GGWCC 1 cut(s) 1643
SmiMI CAYNNNNRTG 2 cut(s) 491, 802
SmlI CTYRAG 2 cut(s) 124, 1669
SmoI CTYRAG 2 cut(s) 124, 1669
SsiI CCGC 3 cut(s) 373, 1032, 1803
SspI AATATT 1 cut(s) 1318
SspMI CTAG 3 cut(s) 267, 756, 1710
StyD4I CCNGG 1 cut(s) 1094
StyI CCWWGG 3 cut(s) 246, 419, 985
TaaI ACNGT 4 cut(s) 776, 1188, 1333, 1731
TaqI TCGA 2 cut(s) 176, 1108
TaqII GACCGA 1 cut(s) 1626
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 4 cut(s) 75, 129, 1110, 1769
Tru1I TTAA 7 cut(s) 281, 369, 875, 1061, 1299, 1314, 1425
Tru9I TTAA 7 cut(s) 281, 369, 875, 1061, 1299, 1314, 1425
TscAI CASTG 4 cut(s) 454, 1191, 1470, 1824
TseFI GTSAC 1 cut(s) 1599
TseI GCWGC 4 cut(s) 1018, 1043, 1121, 1307
Tsp45I GTSAC 1 cut(s) 1599
TspRI CASTG 4 cut(s) 454, 1191, 1470, 1824
VneI GTGCAC 1 cut(s) 945
VpaK11BI GGWCC 1 cut(s) 1643
XagI CCTNNNNNAGG 1 cut(s) 989
XapI RAATTY 4 cut(s) 274, 344, 657, 1531
XbaI TCTAGA 1 cut(s) 755
XceI RCATGY 1 cut(s) 1246
XmiI GTMKAC 1 cut(s) 1144
XmnI GAANNNNTTC 1 cut(s) 1081
XspI CTAG 3 cut(s) 267, 756, 1710
Zsp2I ATGCAT 2 cut(s) 6, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.