Rroxscaffold_4G00285690

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012162
Physical Location & Seq
Forward (+)
6926249 .. 6929157
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285690.1

Sequence Viewer

Length: 1587 bp
ATGGTTTTGACTGATAATGTGGTTTCGACTGATAATGGAAACCAAAAAGAGGAAATTGAAGGCTCCAATGGTGGTGGAGTGAAGGCTCCAGTTCCCTTGGACAACCTTTCTGTGTCTAGTAGGAATTTGTTAAGCGATGAAAAGCCTCAGAGGAGGTTTCATGATGTTATTTCTGATAGGGTAAGCTTCCTGAAATTTGGCTCTGCATCTGCCAGATTTAAGCGGTTAGCTATGGATAAAGATGAGATTTCACGCTCGGTGCCTTCGCCAAGGGGACATGGTTTCAGAGAAAGGATCAATGGGGTCTTTTCCAAGAAAATTGATTGGCCTTCGCTCATGAAAATGAGCAAAGAGTGGATTAGAGATCCAATGAACATGGCTCTTTTTCTGTGGATTGCCTGTGTTGCTGTTTCAGGTGCAATTTTGTTTCTTGTCATGACTGGAATGTTGAACCATGCACTACCAAAGAAGTCCCAGAGAGATGCATGGTTTGAGGTGAATAATCAAATTCTCAATGCACTTTTTACTCTTATGTGTTTGTACCAGCATCCAAAGCGATTTTACCACCTTGTACTTCTGTGTAGATGGAAACCAGAAGACATTTCTAGACTCCGAAAGATTTACTGTAAAAATGGGACTTATAAGCCACATGAATGGGCACACATGATGGTTGTTGTTGTTCTGCTCCATGTGAATTGCTTTGCGCAATATGCACTTTGTGGTTTAAACTTGGGTTACAAAAGATCTGAACGGCCAGCCATAGGAGTTGGAATATGTGTATCTTTTGCAATTGGTGCACCTGCAATTGCTGGTATATACAACATTGTCAGTCCCCTTGGGAAGGATTATGACATGGATGAGGAAGCGCAGGTTCAGTTTAGTGCTGAAGAAGCAGCTGAAAAGTTGAGGTTAAAGCGATTAGTGAGAAGGTATTCTTTTGCATCCAGGGATGAACATCGAATCATTGAGACTACCCCAAAATGGACTGGAGGTATACTGGATATTTGGGATGACATTTCTCTTGCATATGTCTCACTGTTCTGTAGCTTTTGTGTATTTGGGTGGAATATGGACAGACTTGGTTTTGGGAACATGTATGTTCATATTCTGACATTTATTCTGTTTTGCGTGGCTCCTTTCTGGATCTTTAACTTGGCTGCTGTTAATATTGACAATGAGACTGTTCGGGAGTCTCTTGCGGTAACTGGCATTATTCTCTGTGTTTTTGGTTTGCTCTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGATTTAACTTGCCTTCTTATAACTTCTGTTTTGGTGAACCGGCAGTGTCTGATTGCGCATTGTGGCTTTTCTGTTGTTGGTGTTCTCTTGCTCAGGAAGTGAGGACGGGGAATTCCTATGACATTGTAGAAGATAAGTTTTGTAAAAAAGAAACAGATATTGGGAGCCAGCTACCAATGTCACCCTTGCCCCGTGAAGATGGAGTGGGTCAACTTCGGTGTGGTCCAAGTTCTCCTTTGGGGAACTACTCAAGCCCAACTAAGACTGGCATGGTTGGTTCTCCAAGTCCTAGCAGATTTTCAAAGGGGACTGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

528

Amino Acids

59.62

Weight (kDa)

8.77

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2985 PF11204 118 - 196 1e-31 Protein of unknown function (DUF2985)
PLAC8 PF04749 328 - 458 2.2e-19 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012162)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10980 AT5G05350
fragaria_vesca FvH4_7g25461
malus_domestica MD01G1161000.v1.1 MD07G1229000.v1.1
prunus_persica Prupe.2G259100_v2.0.a1
pyrus_communis pycom01g17680 pycom07g20720
rosa_chinensis RchiOBHm_Chr1g0371431
rosa_laevigata RLG00000026963
rosa_multiflora Rmu_sc0000809.1_g000023 Rmu_sc0017835.1_g000001
rosa_roxburghii Rroxscaffold_4G00285690
rosa_rugosa Rorug01G0363900
rosa_samantha Rh1AG374100 Rh1BG337500 Rh1CG350800 Rh1DG368500
rosa_wichuraiana Rw1G032900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 642, 1290
AarI CACCTGC 1 cut(s) 808
Acc16I TGCGCA 2 cut(s) 705, 1327
Acc36I ACCTGC 2 cut(s) 808, 859
AccB1I GGYRCC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 994
AciI CCGC 2 cut(s) 223, 1199
AclWI GGATC 5 cut(s) 302, 359, 1151, 1249, 1262
AcoI YGGCCR 1 cut(s) 752
AcsI RAATTY 4 cut(s) 124, 194, 507, 1381
AcuI CTGAAG 1 cut(s) 906
AdeI CACNNNGTG 1 cut(s) 719
AfaI GTAC 2 cut(s) 542, 573
AfiI CCNNNNNNNGG 4 cut(s) 49, 761, 841, 981
AflIII ACRYGT 1 cut(s) 1092
AgsI TTSAA 3 cut(s) 59, 451, 1572
AjnI CCWGG 1 cut(s) 944
AjuI GAANNNNNNNTTGG 2 cut(s) 1413, 1445
AluBI AGCT 5 cut(s) 186, 230, 896, 1047, 1441
AluI AGCT 5 cut(s) 186, 230, 896, 1047, 1441
Alw21I GWGCWC 1 cut(s) 799
Alw26I GTCTC 4 cut(s) 962, 1036, 1172, 1197
Alw44I GTGCAC 1 cut(s) 795
AlwI GGATC 5 cut(s) 302, 359, 1151, 1249, 1262
AlwNI CAGNNNCTG 1 cut(s) 1319
AoxI GGCC 2 cut(s) 326, 752
ApaLI GTGCAC 1 cut(s) 795
ApeKI GCWGC 2 cut(s) 893, 1157
ApoI RAATTY 4 cut(s) 124, 194, 507, 1381
Asp700I GAANNNNTTC 1 cut(s) 931
AspLEI GCGC 3 cut(s) 706, 868, 1328
AspS9I GGNCC 1 cut(s) 1493
AsuHPI GGTGA 3 cut(s) 508, 1316, 1443
AvaII GGWCC 1 cut(s) 1493
BaeGI GKGCMC 2 cut(s) 661, 799
BamHI GGATCC 1 cut(s) 1254
BanI GGYRCC 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 603
Bbv12I GWGCWC 1 cut(s) 799
BbvI GCAGC 2 cut(s) 905, 1144
BccI CCATC 3 cut(s) 579, 661, 1463
BceAI ACGGC 1 cut(s) 767
BciT130I CCWGG 1 cut(s) 946
BcoDI GTCTC 4 cut(s) 962, 1036, 1172, 1197
BfaI CTAG 3 cut(s) 117, 606, 1560
BfmI CTRYAG 1 cut(s) 1042
BfuAI ACCTGC 2 cut(s) 808, 859
BglII AGATCT 1 cut(s) 743
BisI GCNGC 2 cut(s) 894, 1158
BlsI GCNGC 2 cut(s) 895, 1159
Bme1390I CCNGG 1 cut(s) 946
Bme18I GGWCC 1 cut(s) 1493
BmgT120I GGNCC 1 cut(s) 1493
BmiI GGNNCC 6 cut(s) 64, 87, 261, 1134, 1256, 1436
BmrFI CCNGG 1 cut(s) 946
BmsI GCATC 4 cut(s) 215, 472, 556, 950
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 2 cut(s) 72, 1008
Bpu10I CCTNAGC 1 cut(s) 1362
BpuEI CTTGAG 1 cut(s) 1504
BsaBI GATNNNNATC 1 cut(s) 954
BsaJI CCNNGG 4 cut(s) 96, 269, 835, 945
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 761, 841, 981
Bse118I RCCGGY 1 cut(s) 1309
Bse1I ACTGG 6 cut(s) 89, 445, 991, 1002, 1210, 1540
Bse8I GATNNNNATC 1 cut(s) 954
BseBI CCWGG 1 cut(s) 946
BseDI CCNNGG 4 cut(s) 96, 269, 835, 945
BseGI GGATG 5 cut(s) 547, 862, 941, 955, 1015
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 4 cut(s) 49, 761, 841, 981
BseMII CTCAG 2 cut(s) 161, 1376
BseNI ACTGG 6 cut(s) 89, 445, 991, 1002, 1210, 1540
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 2 cut(s) 661, 799
BseXI GCAGC 2 cut(s) 905, 1144
BshFI GGCC 2 cut(s) 328, 754
BshNI GGYRCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 799
BsiSI CCGG 1 cut(s) 1310
BslFI GGGAC 4 cut(s) 288, 457, 649, 816
BslI CCNNNNNNNGG 4 cut(s) 49, 761, 841, 981
BsmAI GTCTC 4 cut(s) 962, 1036, 1172, 1197
BsmFI GGGAC 4 cut(s) 288, 457, 649, 816
BsnI GGCC 2 cut(s) 328, 754
Bsp1286I GDGCHC 2 cut(s) 661, 799
Bsp143I GATC 5 cut(s) 294, 364, 743, 1143, 1254
BspACI CCGC 2 cut(s) 223, 1199
BspANI GGCC 2 cut(s) 328, 754
BspCNI CTCAG 2 cut(s) 160, 1375
BspHI TCATGA 3 cut(s) 160, 336, 435
BspLI GGNNCC 6 cut(s) 64, 87, 261, 1134, 1256, 1436
BspMI ACCTGC 2 cut(s) 808, 859
BspPI GGATC 5 cut(s) 302, 359, 1151, 1249, 1262
BspT107I GGYRCC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 1309
BsrI ACTGG 6 cut(s) 89, 445, 991, 1002, 1210, 1540
BssAI RCCGGY 1 cut(s) 1309
BssECI CCNNGG 4 cut(s) 96, 269, 835, 945
BssMI GATC 5 cut(s) 294, 364, 743, 1143, 1254
BssNAI GTATAC 1 cut(s) 995
BssT1I CCWWGG 3 cut(s) 96, 269, 835
Bst1107I GTATAC 1 cut(s) 995
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 4 cut(s) 626, 1038, 1183, 1582
BstAPI GCANNNNNTGC 1 cut(s) 794
BstC8I GCNNGC 2 cut(s) 756, 1439
BstDEI CTNAG 3 cut(s) 147, 1362, 1530
BstENI CCTNNNNNAGG 1 cut(s) 839
BstF5I GGATG 5 cut(s) 547, 862, 941, 955, 1015
BstHHI GCGC 3 cut(s) 706, 868, 1328
BstKTI GATC 5 cut(s) 297, 367, 746, 1146, 1257
BstMAI GTCTC 4 cut(s) 962, 1036, 1172, 1197
BstMBI GATC 5 cut(s) 294, 364, 743, 1143, 1254
BstMWI GCNNNNNNNGC 5 cut(s) 404, 553, 710, 794, 890
BstNI CCWGG 1 cut(s) 946
BstNSI RCATGY 1 cut(s) 1096
BstSCI CCNGG 1 cut(s) 944
BstSFI CTRYAG 1 cut(s) 1042
BstSLI GKGCMC 2 cut(s) 661, 799
BstV1I GCAGC 2 cut(s) 905, 1144
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 4 cut(s) 364, 743, 1143, 1254
BstXI CCANNNNNNTGG 1 cut(s) 654
BstYI RGATCY 4 cut(s) 364, 743, 1143, 1254
BstZ17I GTATAC 1 cut(s) 995
BsuRI GGCC 2 cut(s) 328, 754
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 5 cut(s) 547, 862, 941, 955, 1015
BtsI GCAGTG 1 cut(s) 1320
BtsIMutI CAGTG 2 cut(s) 1034, 1320
BveI ACCTGC 2 cut(s) 808, 859
Cac8I GCNNGC 2 cut(s) 756, 1439
CaiI CAGNNNCTG 1 cut(s) 1319
CciI TCATGA 3 cut(s) 160, 336, 435
CfoI GCGC 3 cut(s) 706, 868, 1328
Cfr10I RCCGGY 1 cut(s) 1309
Cfr13I GGNCC 1 cut(s) 1493
Csp6I GTAC 2 cut(s) 541, 572
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviQI GTAC 2 cut(s) 541, 572
DdeI CTNAG 3 cut(s) 147, 1362, 1530
DpnI GATC 5 cut(s) 296, 366, 745, 1145, 1256
DpnII GATC 5 cut(s) 294, 364, 743, 1143, 1254
DraI TTTAAA 1 cut(s) 726
DraIII CACNNNGTG 1 cut(s) 719
EaeI YGGCCR 1 cut(s) 752
Eco130I CCWWGG 3 cut(s) 96, 269, 835
Eco47I GGWCC 1 cut(s) 1493
Eco57I CTGAAG 1 cut(s) 906
EcoNI CCTNNNNNAGG 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 1381
EcoRII CCWGG 1 cut(s) 944
EcoT14I CCWWGG 3 cut(s) 96, 269, 835
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 3 cut(s) 96, 269, 835
FalI AAGNNNNNCTT 4 cut(s) 919, 951, 1489, 1521
FaqI GGGAC 4 cut(s) 288, 457, 649, 816
FauNDI CATATG 1 cut(s) 1027
FblI GTMKAC 1 cut(s) 994
Fnu4HI GCNGC 2 cut(s) 894, 1158
FokI GGATG 5 cut(s) 534, 869, 928, 962, 1022
Fsp4HI GCNGC 2 cut(s) 894, 1158
FspBI CTAG 3 cut(s) 117, 606, 1560
FspI TGCGCA 2 cut(s) 705, 1327
GlaI GCGC 3 cut(s) 705, 867, 1327
GluI GCNGC 2 cut(s) 894, 1158
GsuI CTGGAG 2 cut(s) 72, 1008
HaeIII GGCC 2 cut(s) 328, 754
HapII CCGG 1 cut(s) 1310
HhaI GCGC 3 cut(s) 706, 868, 1328
Hin6I GCGC 3 cut(s) 704, 866, 1326
HinP1I GCGC 3 cut(s) 704, 866, 1326
HincII GTYRAC 1 cut(s) 1481
HindII GTYRAC 1 cut(s) 1481
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 3 cut(s) 609, 960, 1190
HpaII CCGG 1 cut(s) 1310
HphI GGTGA 3 cut(s) 508, 1316, 1443
Hpy166II GTNNAC 4 cut(s) 797, 995, 1307, 1481
Hpy188I TCNGA 7 cut(s) 150, 175, 287, 614, 748, 1110, 1321
Hpy188III TCNNGA 8 cut(s) 161, 190, 337, 436, 606, 1141, 1187, 1364
Hpy8I GTNNAC 4 cut(s) 797, 995, 1307, 1481
HpyAV CCTTC 7 cut(s) 53, 76, 273, 339, 835, 921, 1293
HpyCH4III ACNGT 4 cut(s) 626, 1038, 1183, 1582
HpyF10VI GCNNNNNNNGC 5 cut(s) 404, 553, 710, 794, 890
HpyF3I CTNAG 3 cut(s) 147, 1362, 1530
HspAI GCGC 3 cut(s) 704, 866, 1326
Kzo9I GATC 5 cut(s) 294, 364, 743, 1143, 1254
LmnI GCTCC 5 cut(s) 68, 91, 690, 1138, 1434
Lsp1109I GCAGC 2 cut(s) 905, 1144
LweI GCATC 4 cut(s) 215, 472, 556, 950
MaeI CTAG 3 cut(s) 117, 606, 1560
MaeIII GTNAC 3 cut(s) 734, 1201, 1449
MalI GATC 5 cut(s) 296, 366, 745, 1145, 1256
MboI GATC 5 cut(s) 294, 364, 743, 1143, 1254
MboII GAAGA 4 cut(s) 608, 899, 1412, 1478
MfeI CAATTG 2 cut(s) 789, 804
MflI RGATCY 4 cut(s) 364, 743, 1143, 1254
MhlI GDGCHC 2 cut(s) 661, 799
MlyI GAGTC 2 cut(s) 603, 1199
MmeI TCCRAC 1 cut(s) 748
Mph1103I ATGCAT 1 cut(s) 487
MroXI GAANNNNTTC 1 cut(s) 931
MseI TTAA 7 cut(s) 131, 219, 725, 911, 1149, 1164, 1275
MslI CAYNNNNRTG 2 cut(s) 341, 652
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 1 cut(s) 1310
MspR9I CCNGG 1 cut(s) 946
MssI GTTTAAAC 1 cut(s) 726
MunI CAATTG 2 cut(s) 789, 804
MvaI CCWGG 1 cut(s) 946
MwoI GCNNNNNNNGC 5 cut(s) 404, 553, 710, 794, 890
NdeI CATATG 1 cut(s) 1027
NdeII GATC 5 cut(s) 294, 364, 743, 1143, 1254
NlaIV GGNNCC 6 cut(s) 64, 87, 261, 1134, 1256, 1436
NmuCI GTSAC 1 cut(s) 1449
NsbI TGCGCA 2 cut(s) 705, 1327
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 1096
PagI TCATGA 3 cut(s) 160, 336, 435
PaqCI CACCTGC 1 cut(s) 808
PciI ACATGT 1 cut(s) 1092
PdmI GAANNNNTTC 1 cut(s) 931
PfeI GAWTC 1 cut(s) 960
PkrI GCNGC 2 cut(s) 895, 1159
PleI GAGTC 2 cut(s) 603, 1198
PmeI GTTTAAAC 1 cut(s) 726
PpsI GAGTC 2 cut(s) 603, 1198
PscI ACATGT 1 cut(s) 1092
PsiI TTATAA 2 cut(s) 642, 1290
Psp6I CCWGG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 944
PspN4I GGNNCC 6 cut(s) 64, 87, 261, 1134, 1256, 1436
PspPI GGNCC 1 cut(s) 1493
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 4 cut(s) 364, 743, 1143, 1254
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 2 cut(s) 542, 573
RsaNI GTAC 2 cut(s) 541, 572
RseI CAYNNNNRTG 2 cut(s) 341, 652
SaqAI TTAA 7 cut(s) 131, 219, 725, 911, 1149, 1164, 1275
SatI GCNGC 2 cut(s) 894, 1158
Sau3AI GATC 5 cut(s) 294, 364, 743, 1143, 1254
Sau96I GGNCC 1 cut(s) 1493
SchI GAGTC 2 cut(s) 603, 1199
ScrFI CCNGG 1 cut(s) 946
SduI GDGCHC 2 cut(s) 661, 799
SfaNI GCATC 4 cut(s) 215, 472, 556, 950
SfcI CTRYAG 1 cut(s) 1042
SinI GGWCC 1 cut(s) 1493
SmiMI CAYNNNNRTG 2 cut(s) 341, 652
SmlI CTYRAG 1 cut(s) 1519
SmoI CTYRAG 1 cut(s) 1519
SsiI CCGC 2 cut(s) 223, 1199
SspI AATATT 1 cut(s) 1168
SspMI CTAG 3 cut(s) 117, 606, 1560
StyD4I CCNGG 1 cut(s) 944
StyI CCWWGG 3 cut(s) 96, 269, 835
TaaI ACNGT 4 cut(s) 626, 1038, 1183, 1582
TaqI TCGA 2 cut(s) 26, 958
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 1 cut(s) 960
Tru1I TTAA 7 cut(s) 131, 219, 725, 911, 1149, 1164, 1275
Tru9I TTAA 7 cut(s) 131, 219, 725, 911, 1149, 1164, 1275
TscAI CASTG 2 cut(s) 1041, 1320
TseFI GTSAC 1 cut(s) 1449
TseI GCWGC 2 cut(s) 893, 1157
Tsp45I GTSAC 1 cut(s) 1449
TspDTI ATGAA 7 cut(s) 149, 153, 353, 386, 666, 966, 1091
TspRI CASTG 2 cut(s) 1041, 1320
VneI GTGCAC 1 cut(s) 795
VpaK11BI GGWCC 1 cut(s) 1493
XagI CCTNNNNNAGG 1 cut(s) 839
XapI RAATTY 4 cut(s) 124, 194, 507, 1381
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 1 cut(s) 1096
XmiI GTMKAC 1 cut(s) 994
XmnI GAANNNNTTC 1 cut(s) 931
XspI CTAG 3 cut(s) 117, 606, 1560
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.