Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008985

Physical Location & Seq

Genomic Coordinates Reverse (-)

3476187 .. 3477900

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGACGACGCCGGAGACTCAGTCGAAGACTCACCGTCTACCGGCGGGAAGAGAGGATTGGTGGAGCGAAGACGCTACGGCGACATTGATCGAAGCTTGGGGAGATCGTTACGTCAATCTCAACCGGGGAAATCTCCGGCAAAACGATTGGAAAGAAGTCGCCGACGCCGTCAATTCAAGCCACGGGAATGGCCGGCCAAAGACCGATGTACAGTGCAAAAACCGGATCGATACGTTGAAGAAGAAGTACAAAACTGAAAAGGCGAAACCTTTATCGAATTGGTGCTTCTTTGATAGACTCGATTTCTTAATCGGTCCGGTTATGAAGAAATCGTCCGGTGCTGTTGTTAAATCGGCGTTGATGAACCCTAATTTGAATCCTACTGGATCTAAATCAACTGGTAGCTCTCTCGATGACGATGATGATGATGATGATGACGACGAAGAAGATGATGATGATGCGGGTGATTGGGGATTTGTGGTGAGGAAGCATCGTAAAGTTGAAGATGTAGATTCGAGTGAAGGATCAGCCTTTAGGGAGCTAGCGAGATCGATTCTGAAGTTAGGGGAAGCGTTTGAGAGAATCGAGGGGAAGAAGCAACAGATGATGATTGAATTGGAGAAACAGAGAATGGAAGTTGCAAAGGAGCTTGAGTTACAACGAATGAATATGTTGATGGAGATGCAATTGGAGCTTGAGAAATCTAAACTTGGGAAACGAAGAGCTGCTTCAGGTAAGAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

249

Amino Acids

28.39

Weight (kDa)

5.38

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	20 - 103	1.6e-18	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11100 AT5G05550 AT5G05550 AT5G05550
fragaria_vesca	FvH4_7g24800
malus_domestica	MD01G1155800.v1.1 MD07G1224600.v1.1
prunus_persica	Prupe.2G253200_v2.0.a1
pyrus_communis	pycom01g17290 pycom07g20330
rosa_chinensis	RchiOBHm_Chr1g0370671
rosa_laevigata	RLG00000027019
rosa_multiflora	Rmu_sc0002021.1_g000001 Rmu_sc0004550.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286310 Rroxscaffold_4G00286330
rosa_rugosa	Rorug01G0358300
rosa_samantha	Rh1AG368000 Rh1BG331500 Rh1CG345500 Rh1DG362900
rosa_wichuraiana	Rw1G032380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	40
AciI	CCGC	2 cut(s)	47, 464
AclWI	GGATC	3 cut(s)	236, 397, 535
AcoI	YGGCCR	2 cut(s)	193, 197
AcuI	CTGAAG	2 cut(s)	581, 717
AcyI	GRCGYC	2 cut(s)	11, 168
AfaI	GTAC	2 cut(s)	213, 251
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	180, 241, 379, 506, 617
AhdI	GACNNNNNGTC	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
AluBI	AGCT	6 cut(s)	98, 408, 544, 652, 697, 728
AluI	AGCT	6 cut(s)	98, 408, 544, 652, 697, 728
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	3 cut(s)	236, 397, 535
AoxI	GGCC	2 cut(s)	193, 197
ApeKI	GCWGC	1 cut(s)	728
AspS9I	GGNCC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	26, 479, 496
AsuNHI	GCTAGC	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	317
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BbsI	GAAGAC	2 cut(s)	35, 78
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	1 cut(s)	673
BceAI	ACGGC	2 cut(s)	96, 155
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	11
BfaI	CTAG	1 cut(s)	545
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	317
BmeRI	GACNNNNNGTC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	451, 502, 675
BmtI	GCTAGC	1 cut(s)	548
BpiI	GAAGAC	2 cut(s)	35, 78
BpuEI	CTTGAG	2 cut(s)	674, 719
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	2 cut(s)	231, 554
BsaBI	GATNNNNATC	1 cut(s)	394
BsaHI	GRCGYC	2 cut(s)	11, 168
BsaJI	CCNNGG	2 cut(s)	127, 184
BsaWI	WCCGGW	3 cut(s)	225, 319, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 641, 671
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	2 cut(s)	43, 195
Bse1I	ACTGG	2 cut(s)	391, 406
Bse8I	GATNNNNATC	1 cut(s)	394
BseCI	ATCGAT	2 cut(s)	231, 554
BseDI	CCNNGG	2 cut(s)	127, 184
BseJI	GATNNNNATC	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	391, 406
BseXI	GCAGC	1 cut(s)	715
BshFI	GGCC	2 cut(s)	195, 199
BshVI	ATCGAT	2 cut(s)	231, 554
BsiSI	CCGG	8 cut(s)	14, 44, 127, 139, 196, 226, 320, 339
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	195, 199
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
BspACI	CCGC	2 cut(s)	47, 464
BspANI	GGCC	2 cut(s)	195, 199
BspCNI	CTCAG	1 cut(s)	34
BspDI	ATCGAT	2 cut(s)	231, 554
BspOI	GCTAGC	1 cut(s)	548
BspPI	GGATC	3 cut(s)	236, 397, 535
BspQI	GCTCTTC	1 cut(s)	718
BsrFI	RCCGGY	2 cut(s)	43, 195
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	391, 406
BssAI	RCCGGY	2 cut(s)	43, 195
BssECI	CCNNGG	2 cut(s)	127, 184
BssMI	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
BssNI	GRCGYC	2 cut(s)	11, 168
Bst4CI	ACNGT	2 cut(s)	38, 216
Bst6I	CTCTTC	2 cut(s)	46, 718
BstACI	GRCGYC	2 cut(s)	11, 168
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	197, 546
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	184
BstKTI	GATC	6 cut(s)	93, 109, 231, 392, 530, 554
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	694
BstSCI	CCNGG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	2 cut(s)	35, 78
BstX2I	RGATCY	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	389
Bsu15I	ATCGAT	2 cut(s)	231, 554
BsuRI	GGCC	2 cut(s)	195, 199
BsuTUI	ATCGAT	2 cut(s)	231, 554
BtgI	CCRYGG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	197, 546
Cfr10I	RCCGGY	2 cut(s)	43, 195
Cfr13I	GGNCC	1 cut(s)	317
ClaI	ATCGAT	2 cut(s)	231, 554
CpoI	CGGWCCG	1 cut(s)	317
CseI	GACGC	3 cut(s)	19, 83, 176
Csp6I	GTAC	2 cut(s)	212, 250
CspI	CGGWCCG	1 cut(s)	317
CviQI	GTAC	2 cut(s)	212, 250
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	6 cut(s)	92, 108, 230, 391, 529, 553
DpnII	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
DriI	GACNNNNNGTC	1 cut(s)	36
EaeI	YGGCCR	2 cut(s)	193, 197
Eam1104I	CTCTTC	2 cut(s)	46, 718
Eam1105I	GACNNNNNGTC	1 cut(s)	36
EarI	CTCTTC	2 cut(s)	46, 718
Eco47I	GGWCC	1 cut(s)	317
Eco57I	CTGAAG	2 cut(s)	581, 717
FaiI	YATR	2 cut(s)	326, 674
FalI	AAGNNNNNCTT	2 cut(s)	715, 747
FauI	CCCGC	2 cut(s)	40, 457
FblI	GTMKAC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	729
FseI	GGCCGGCC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	195, 199
HapII	CCGG	8 cut(s)	14, 44, 127, 139, 196, 226, 320, 339
HgaI	GACGC	3 cut(s)	19, 83, 176
Hin1I	GRCGYC	2 cut(s)	11, 168
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	7 cut(s)	19, 31, 300, 379, 515, 556, 585
HpaII	CCGG	8 cut(s)	14, 44, 127, 139, 196, 226, 320, 339
HphI	GGTGA	3 cut(s)	26, 479, 496
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	561
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	1 cut(s)	41
Hpy99I	CGWCG	3 cut(s)	13, 170, 446
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	2 cut(s)	38, 216
HpyCH4IV	ACGT	2 cut(s)	114, 236
HpyCH4V	TGCA	3 cut(s)	219, 644, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	694
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	2 cut(s)	114, 236
Hsp92I	GRCGYC	2 cut(s)	11, 168
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
Kzo9I	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
LguI	GCTCTTC	1 cut(s)	718
LmnI	GCTCC	4 cut(s)	66, 541, 649, 694
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	3 cut(s)	451, 502, 675
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	2 cut(s)	114, 236
MaeIII	GTNAC	2 cut(s)	110, 657
MalI	GATC	6 cut(s)	92, 108, 230, 391, 529, 553
MboI	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
MfeI	CAATTG	1 cut(s)	689
MflI	RGATCY	1 cut(s)	389
MluCI	AATT	5 cut(s)	175, 280, 373, 617, 689
MlyI	GAGTC	3 cut(s)	13, 25, 294
MnlI	CCTC	3 cut(s)	49, 480, 583
MroNI	GCCGGC	1 cut(s)	195
MseI	TTAA	2 cut(s)	311, 351
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	8 cut(s)	14, 44, 127, 139, 196, 226, 320, 339
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	694
NaeI	GCCGGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
NgoMIV	GCCGGC	1 cut(s)	195
NheI	GCTAGC	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PdiI	GCCGGC	1 cut(s)	197
PfeI	GAWTC	4 cut(s)	379, 515, 556, 585
PflFI	GACNNNGTC	2 cut(s)	22, 170
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	3 cut(s)	13, 25, 294
PpsI	GAGTC	3 cut(s)	13, 25, 294
PspPI	GGNCC	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	389
PsyI	GACNNNGTC	2 cut(s)	22, 170
RigI	GGCCGGCC	1 cut(s)	199
RsaI	GTAC	2 cut(s)	213, 251
RsaNI	GTAC	2 cut(s)	212, 250
RseI	CAYNNNNRTG	1 cut(s)	189
Rsr2I	CGGWCCG	1 cut(s)	317
RsrII	CGGWCCG	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	311, 351
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	6 cut(s)	90, 106, 228, 389, 527, 551
Sau96I	GGNCC	1 cut(s)	317
SchI	GAGTC	3 cut(s)	13, 25, 294
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	3 cut(s)	451, 502, 675
SinI	GGWCC	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	653, 698
SmoI	CTYRAG	2 cut(s)	653, 698
Sse9I	AATT	5 cut(s)	175, 280, 373, 617, 689
SsiI	CCGC	2 cut(s)	47, 464
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	126
TaaI	ACNGT	2 cut(s)	38, 216
TaiI	ACGT	2 cut(s)	117, 239
TaqI	TCGA	9 cut(s)	26, 93, 231, 278, 303, 414, 518, 554, 588
TaqII	GACCGA	2 cut(s)	221, 305
TasI	AATT	5 cut(s)	175, 280, 373, 617, 689
TatI	WGTACW	2 cut(s)	211, 249
TfiI	GAWTC	4 cut(s)	379, 515, 556, 585
Tru1I	TTAA	2 cut(s)	311, 351
Tru9I	TTAA	2 cut(s)	311, 351
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	1 cut(s)	728
TspDTI	ATGAA	3 cut(s)	341, 380, 683
TspRI	CASTG	1 cut(s)	221
Tth111I	GACNNNGTC	2 cut(s)	22, 170
VpaK11BI	GGWCC	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	40
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.