AT5G05550
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008985
Physical Location & Seq
Reverse (-)
1639000 .. 1640960
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05550.1

Sequence Viewer

Length: 741 bp
ATGGAGACGACGACGCCGCAGTCAAAATCAAGTGTGTCCCACCGACCGCCGTTGGGAAGAGAAGACTGGTGGAGTGAGGAAGCGACGGCGACGCTGGTAGAAGCCTGGGGCAATCGTTACGTCAAGCTGAACCACGGAAATCTCCGGCAGAATGACTGGAAAGACGTCGCCGACGCCGTTAACTCTAGACACGGTGATAACAGCCGTAAGAAGACCGACTTACAGTGTAAGAACCGGGTCGATACTTTGAAGAAGAAGTACAAAACAGAGAAAGCTAAACTCTCGCCGTCGACTTGGCGTTTCTATAACCGCCTCGATGTTCTAATCGGTCCCGTTGTGAAGAAATCGGCTGGCGGAGTTGTCAAATCAGCGCCTTTTAAGAATCATCTGAATCCAACTGGATCGAACTCTACTGGAAGCTCTCTTGAAGATGATGATGAGGATGATGATGAGGTTGGTGATTGGGAATTCGTTGCTAGGAAGCATCCTCGTGTGGAAGAGGTAGATCTGAGTGAAGGATCAACGTGTAGGGAACTAGCTACGGCGATTCTCAAGTTTGGAGAAGTTTACGAGAGAATTGAAGGGAAGAAGCAACAGATGATGATTGAGTTGGAGAAGCAGAGAATGGAAGTGACAAAGGAGGTAGAGTTAAAACGAATGAACATGTTGATGGAGATGCAGTTAGAGATTGAGAAATCAAAGCACCGGAAACGCGCAAGTGCTTCAGGTAAGCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

246

Amino Acids

28.19

Weight (kDa)

8.67

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 22 - 106 1.8e-17 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 19
AatII GACGTC 1 cut(s) 168
AccI GTMKAC 1 cut(s) 290
AccII CGCG 1 cut(s) 714
AciI CCGC 4 cut(s) 17, 47, 310, 354
AclWI GGATC 2 cut(s) 409, 526
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 3 cut(s) 14, 165, 174
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 2 cut(s) 524, 663
AgsI TTSAA 3 cut(s) 250, 428, 581
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 4 cut(s) 127, 275, 420, 539
AluI AGCT 4 cut(s) 127, 275, 420, 539
AlwI GGATC 2 cut(s) 409, 526
ApoI RAATTY 1 cut(s) 467
AspLEI GCGC 2 cut(s) 373, 716
AspS9I GGNCC 1 cut(s) 329
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 206, 470
AvaII GGWCC 1 cut(s) 329
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 69, 218
BccI CCATC 1 cut(s) 664
BceAI ACGGC 6 cut(s) 34, 102, 161, 189, 271, 558
BciT130I CCWGG 1 cut(s) 106
BcnI CCSGG 1 cut(s) 236
BfaI CTAG 3 cut(s) 186, 477, 536
BfoI RGCGCY 1 cut(s) 374
BglII AGATCT 1 cut(s) 505
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 2 cut(s) 106, 236
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 106, 236
BmsI GCATC 2 cut(s) 493, 666
BpiI GAAGAC 2 cut(s) 69, 218
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 236
BsaHI GRCGYC 3 cut(s) 14, 165, 174
BsaJI CCNNGG 2 cut(s) 105, 133
BsaWI WCCGGW 1 cut(s) 705
BsaXI ACNNNNNCTCC 4 cut(s) 632, 662, 665, 695
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 71, 161, 403, 418
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 105, 133
BseGI GGATG 2 cut(s) 448, 484
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 4 cut(s) 71, 161, 403, 418
Bsh1236I CGCG 1 cut(s) 714
Bsh1285I CGRYCG 1 cut(s) 47
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 3 cut(s) 145, 235, 706
BslFI GGGAC 2 cut(s) 22, 315
BslI CCNNNNNNNGG 1 cut(s) 53
BsmFI GGGAC 2 cut(s) 22, 315
Bsp143I GATC 3 cut(s) 401, 505, 518
BspACI CCGC 4 cut(s) 17, 47, 310, 354
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 1 cut(s) 331
BspPI GGATC 2 cut(s) 409, 526
BsrI ACTGG 4 cut(s) 71, 161, 403, 418
BssECI CCNNGG 2 cut(s) 105, 133
BssMI GATC 3 cut(s) 401, 505, 518
BssNI GRCGYC 3 cut(s) 14, 165, 174
BssSI CACGAG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 106
Bst4CI ACNGT 2 cut(s) 194, 225
Bst6I CTCTTC 2 cut(s) 52, 492
BstACI GRCGYC 3 cut(s) 14, 165, 174
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 1 cut(s) 509
BstDSI CCRYGG 1 cut(s) 133
BstF5I GGATG 2 cut(s) 448, 484
BstFNI CGCG 1 cut(s) 714
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 2 cut(s) 373, 716
BstKTI GATC 3 cut(s) 404, 508, 521
BstMBI GATC 3 cut(s) 401, 505, 518
BstMCI CGRYCG 1 cut(s) 47
BstNI CCWGG 1 cut(s) 106
BstNSI RCATGY 1 cut(s) 667
BstSCI CCNGG 2 cut(s) 104, 234
BstUI CGCG 1 cut(s) 714
BstV2I GAAGAC 2 cut(s) 69, 218
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 133
BtsCI GGATG 2 cut(s) 448, 484
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 2 cut(s) 373, 716
Cfr13I GGNCC 1 cut(s) 329
CseI GACGC 3 cut(s) 22, 100, 182
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 664
CviJI RGCY 7 cut(s) 104, 127, 204, 275, 350, 420, 539
CviKI_1 RGCY 7 cut(s) 104, 127, 204, 275, 350, 420, 539
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 509
DpnI GATC 3 cut(s) 403, 507, 520
DpnII GATC 3 cut(s) 401, 505, 518
DrdI GACNNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 52, 492
EarI CTCTTC 2 cut(s) 52, 492
EciI GGCGGA 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 708
EcoRI GAATTC 1 cut(s) 467
EcoRII CCWGG 1 cut(s) 104
FaeI CATG 1 cut(s) 667
FaiI YATR 2 cut(s) 306, 665
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 2 cut(s) 22, 315
FatI CATG 1 cut(s) 663
FblI GTMKAC 1 cut(s) 290
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 2 cut(s) 455, 471
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 3 cut(s) 186, 477, 536
GlaI GCGC 2 cut(s) 372, 715
GluI GCNGC 1 cut(s) 17
HaeII RGCGCY 1 cut(s) 374
HapII CCGG 3 cut(s) 145, 235, 706
HgaI GACGC 3 cut(s) 22, 100, 182
HhaI GCGC 2 cut(s) 373, 716
Hin1I GRCGYC 3 cut(s) 14, 165, 174
Hin1II CATG 1 cut(s) 667
Hin6I GCGC 2 cut(s) 371, 714
HinP1I GCGC 2 cut(s) 371, 714
HincII GTYRAC 2 cut(s) 181, 291
HindII GTYRAC 2 cut(s) 181, 291
HinfI GANTC 3 cut(s) 382, 391, 547
HpaI GTTAAC 1 cut(s) 181
HpaII CCGG 3 cut(s) 145, 235, 706
HphI GGTGA 2 cut(s) 206, 470
Hpy166II GTNNAC 3 cut(s) 181, 291, 568
Hpy188I TCNGA 2 cut(s) 390, 510
Hpy188III TCNNGA 2 cut(s) 186, 425
Hpy8I GTNNAC 3 cut(s) 181, 291, 568
Hpy99I CGWCG 7 cut(s) 13, 16, 88, 94, 170, 176, 292
HpyAV CCTTC 2 cut(s) 509, 575
HpyCH4III ACNGT 2 cut(s) 194, 225
HpyCH4IV ACGT 3 cut(s) 120, 165, 524
HpyCH4V TGCA 1 cut(s) 679
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 3 cut(s) 120, 165, 524
Hsp92I GRCGYC 3 cut(s) 14, 165, 174
Hsp92II CATG 1 cut(s) 667
HspAI GCGC 2 cut(s) 371, 714
KspAI GTTAAC 1 cut(s) 181
Kzo9I GATC 3 cut(s) 401, 505, 518
LweI GCATC 2 cut(s) 493, 666
MaeI CTAG 3 cut(s) 186, 477, 536
MaeII ACGT 3 cut(s) 120, 165, 524
MaeIII GTNAC 2 cut(s) 116, 631
MalI GATC 3 cut(s) 403, 507, 520
MboI GATC 3 cut(s) 401, 505, 518
MboII GAAGA 9 cut(s) 69, 74, 223, 262, 265, 352, 440, 509, 598
MfeI CAATTG 1 cut(s) 734
MflI RGATCY 1 cut(s) 505
MluCI AATT 3 cut(s) 467, 576, 734
MmeI TCCRAC 2 cut(s) 419, 591
MnlI CCTC 7 cut(s) 70, 323, 433, 445, 493, 498, 634
MseI TTAA 3 cut(s) 180, 378, 650
MslI CAYNNNNRTG 2 cut(s) 489, 668
MspI CCGG 3 cut(s) 145, 235, 706
MspR9I CCNGG 2 cut(s) 106, 236
MunI CAATTG 1 cut(s) 734
MvaI CCWGG 1 cut(s) 106
MvnI CGCG 1 cut(s) 714
NciI CCSGG 1 cut(s) 236
NdeII GATC 3 cut(s) 401, 505, 518
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 631
NspI RCATGY 1 cut(s) 667
PciI ACATGT 1 cut(s) 663
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PfeI GAWTC 3 cut(s) 382, 391, 547
PkrI GCNGC 1 cut(s) 18
PscI ACATGT 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 1 cut(s) 505
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 2 cut(s) 489, 668
SalI GTCGAC 1 cut(s) 289
SaqAI TTAA 3 cut(s) 180, 378, 650
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 3 cut(s) 401, 505, 518
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 106, 236
SfaNI GCATC 2 cut(s) 493, 666
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 489, 668
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 3 cut(s) 467, 576, 734
SsiI CCGC 4 cut(s) 17, 47, 310, 354
SspMI CTAG 3 cut(s) 186, 477, 536
StyD4I CCNGG 2 cut(s) 104, 234
TaaI ACNGT 2 cut(s) 194, 225
TaiI ACGT 3 cut(s) 123, 168, 527
TaqI TCGA 4 cut(s) 240, 290, 315, 404
TaqII GACCGA 2 cut(s) 230, 317
TasI AATT 3 cut(s) 467, 576, 734
TatI WGTACW 1 cut(s) 258
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 3 cut(s) 382, 391, 547
Tru1I TTAA 3 cut(s) 180, 378, 650
Tru9I TTAA 3 cut(s) 180, 378, 650
TscAI CASTG 1 cut(s) 230
TseFI GTSAC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 1 cut(s) 674
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 290
XspI CTAG 3 cut(s) 186, 477, 536
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.