pycom01g17290
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0008985
Physical Location & Seq
Forward (+)
16637987 .. 16639054
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g17290.2

Sequence Viewer

Length: 999 bp
ATGTGCATTTGTTTTTTTTTATTTTTTCCAAATCGTGTATTATTTTGGAAGGGTAAATGTGCACTTAAAGCGCTTTTGGTAATCCGGCCAACGCCAATAGGGCAGCTGACGTCACTGCCGGCAGATTGCACGGCCAGATTTCCATGCGCTTCTCACTCCGATCCTTTCCTTCATCTGTCTATCATTACCCTCACCGACAGCTCCCACTCCCAATCTTTCTCTCCACCACCTCGGCACCCAAACCCGTCTCTGTCCATGGACCGCCTGACCCGTACACACGCCCCGGCAGGCCGCGACGACTGTTGGAGTGAGGACGCCACGTTGGCACTAATAACGGCCTGGGGCGACCGCTACCTCCATTTAAACCGCGGCATCCTCCGTCAGAAAGACTGGAAGGAGGTGGCCGACGCCGTTAACTCCCATCAAAACGGCGGCGCCAAGCCGTTCAAGACGGACGTCCAGTGCAAGAACCGCATCGACACGTTGAAGAAAAAGTACAAGCTGGAAAAGTCGAAGCCCGGCCAGTCCACGTGGCCCTTCTACCGCCGCCTCCACTCCATAATCTGCTCAACCCCCTCAAACACCGCCGGTGCGACCAAATCAAACCCCCCAATCCTCGCTCTCAGTGCCAAATCCCCCGACCCGAATACGAATCTCCTCGGAGGGTCCACCGACAGCTCAATTCGCCACGACGACGGCGATGATGAGGCGGCGGTGTTTGAGGGTGGAGCGGCGTGCAGGGAATTGGCTAGGGTAATTTCGAAGTTTGGGGAAATGTACGAGAGGATTGAGAATTCGAAGCGGAAGCAGATGATGGAGCTGGAGAAACAGAGGATGGAGTTCGACAAGGAGCTCGCGTTGCAGAGGTTGAGTATGTTCATGGATGTTCAGGTGGAGCTCGGGAAGAAGATGAAGCACTCCAAGTACTCGCATTCTTCAGGTGCCGCCATTGTTCAGAACTTCAACTTCAATTTGAATTTGTTTATGGGTTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

333

Amino Acids

37.31

Weight (kDa)

9.23

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 113, 459
AccB1I GGYRCC 3 cut(s) 234, 434, 941
AccBSI CCGCTC 1 cut(s) 731
AccII CGCG 3 cut(s) 294, 369, 857
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 4 cut(s) 86, 132, 402, 520
AcsI RAATTY 2 cut(s) 793, 976
AcuI CTGAAG 1 cut(s) 921
AcvI CACGTG 1 cut(s) 531
AcyI GRCGYC 5 cut(s) 110, 315, 408, 435, 456
AfaI GTAC 4 cut(s) 274, 497, 779, 926
AfeI AGCGCT 1 cut(s) 72
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 5 cut(s) 448, 487, 964, 970, 976
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 7 cut(s) 106, 201, 502, 678, 820, 853, 898
AluI AGCT 7 cut(s) 106, 201, 502, 678, 820, 853, 898
Alw21I GWGCWC 3 cut(s) 64, 855, 900
Alw26I GTCTC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 60
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 899
Aor51HI AGCGCT 1 cut(s) 72
AoxI GGCC 7 cut(s) 86, 132, 289, 336, 402, 520, 533
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 2 cut(s) 793, 976
AspLEI GCGC 3 cut(s) 73, 149, 437
AspS9I GGNCC 3 cut(s) 259, 534, 666
AsuC2I CCSGG 2 cut(s) 284, 519
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 2 cut(s) 761, 797
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 2 cut(s) 259, 666
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 3 cut(s) 234, 434, 941
BanII GRGCYC 2 cut(s) 855, 900
BarI GAAGNNNNNNTAC 2 cut(s) 479, 511
BbrPI CACGTG 1 cut(s) 531
Bbv12I GWGCWC 3 cut(s) 64, 855, 900
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 429, 808, 829
BceAI ACGGC 6 cut(s) 147, 351, 395, 427, 445, 712
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 2 cut(s) 284, 519
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 750
BfoI RGCGCY 2 cut(s) 74, 438
BglI GCCNNNNNGGC 2 cut(s) 100, 323
BisI GCNGC 8 cut(s) 104, 292, 370, 433, 547, 711, 732, 945
BlsI GCNGC 8 cut(s) 105, 293, 371, 434, 548, 712, 733, 946
BmcAI AGTACT 1 cut(s) 926
Bme1390I CCNGG 3 cut(s) 284, 340, 519
Bme18I GGWCC 2 cut(s) 259, 666
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 3 cut(s) 259, 534, 666
BmiI GGNNCC 4 cut(s) 236, 436, 667, 943
BmrFI CCNGG 3 cut(s) 284, 340, 519
BmsI GCATC 2 cut(s) 381, 483
BoxI GACNNNNGTC 1 cut(s) 455
BpmI CTGGAG 1 cut(s) 842
Bpu14I TTCGAA 2 cut(s) 761, 797
BpuMI CCSGG 2 cut(s) 284, 519
BsaAI YACGTR 1 cut(s) 531
BsaHI GRCGYC 5 cut(s) 110, 315, 408, 435, 456
BsaJI CCNNGG 6 cut(s) 230, 255, 282, 339, 367, 658
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bse118I RCCGGY 2 cut(s) 118, 587
Bse1I ACTGG 3 cut(s) 395, 460, 523
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 6 cut(s) 230, 255, 282, 339, 367, 658
BseGI GGATG 3 cut(s) 372, 840, 889
BseMII CTCAG 1 cut(s) 637
BseNI ACTGG 3 cut(s) 395, 460, 523
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 757
Bsh1236I CGCG 3 cut(s) 294, 369, 857
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 7 cut(s) 88, 134, 291, 338, 404, 522, 535
BshNI GGYRCC 3 cut(s) 234, 434, 941
BsiEI CGRYCG 1 cut(s) 349
BsiHKAI GWGCWC 3 cut(s) 64, 855, 900
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 5 cut(s) 85, 119, 284, 519, 588
BsmAI GTCTC 1 cut(s) 252
BsmBI CGTCTC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 7 cut(s) 88, 134, 291, 338, 404, 522, 535
BsoBI CYCGRG 1 cut(s) 899
Bsp119I TTCGAA 2 cut(s) 761, 797
Bsp1286I GDGCHC 3 cut(s) 64, 855, 900
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 255
BspANI GGCC 7 cut(s) 88, 134, 291, 338, 404, 522, 535
BspCNI CTCAG 1 cut(s) 636
BspFNI CGCG 3 cut(s) 294, 369, 857
BspLI GGNNCC 4 cut(s) 236, 436, 667, 943
BspPI GGATC 1 cut(s) 155
BspT104I TTCGAA 2 cut(s) 761, 797
BspT107I GGYRCC 3 cut(s) 234, 434, 941
BsrBI CCGCTC 1 cut(s) 731
BsrFI RCCGGY 2 cut(s) 118, 587
BsrI ACTGG 3 cut(s) 395, 460, 523
BssAI RCCGGY 2 cut(s) 118, 587
BssECI CCNNGG 6 cut(s) 230, 255, 282, 339, 367, 658
BssMI GATC 1 cut(s) 160
BssNI GRCGYC 5 cut(s) 110, 315, 408, 435, 456
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 302
BstACI GRCGYC 5 cut(s) 110, 315, 408, 435, 456
BstBAI YACGTR 1 cut(s) 531
BstBI TTCGAA 2 cut(s) 761, 797
BstC8I GCNNGC 4 cut(s) 120, 289, 736, 855
BstDEI CTNAG 1 cut(s) 623
BstDSI CCRYGG 2 cut(s) 255, 367
BstF5I GGATG 3 cut(s) 372, 840, 889
BstFNI CGCG 3 cut(s) 294, 369, 857
BstH2I RGCGCY 2 cut(s) 74, 438
BstHHI GCGC 3 cut(s) 73, 149, 437
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 7 cut(s) 68, 100, 323, 471, 626, 684, 859
BstNI CCWGG 1 cut(s) 340
BstPAI GACNNNNGTC 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 282, 338, 517
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 3 cut(s) 294, 369, 857
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 7 cut(s) 88, 134, 291, 338, 404, 522, 535
BtgI CCRYGG 2 cut(s) 255, 367
BtgZI GCGATG 1 cut(s) 714
BtsCI GGATG 3 cut(s) 372, 840, 889
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 3 cut(s) 113, 467, 631
Cac8I GCNNGC 4 cut(s) 120, 289, 736, 855
CfoI GCGC 3 cut(s) 73, 149, 437
Cfr10I RCCGGY 2 cut(s) 118, 587
Cfr13I GGNCC 3 cut(s) 259, 534, 666
Cfr42I CCGCGG 1 cut(s) 370
CseI GACGC 2 cut(s) 323, 416
Csp6I GTAC 4 cut(s) 273, 496, 778, 925
CviAII CATG 3 cut(s) 144, 256, 880
CviQI GTAC 4 cut(s) 273, 496, 778, 925
DdeI CTNAG 1 cut(s) 623
DinI GGCGCC 1 cut(s) 436
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraI TTTAAA 1 cut(s) 363
EaeI YGGCCR 4 cut(s) 86, 132, 402, 520
Ecl136II GAGCTC 2 cut(s) 853, 898
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 2 cut(s) 855, 900
Eco47I GGWCC 2 cut(s) 259, 666
Eco47III AGCGCT 1 cut(s) 72
Eco53kI GAGCTC 2 cut(s) 853, 898
Eco57I CTGAAG 1 cut(s) 921
Eco72I CACGTG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 899
EcoICRI GAGCTC 2 cut(s) 853, 898
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 1 cut(s) 338
EcoT14I CCWWGG 1 cut(s) 255
EcoT38I GRGCYC 2 cut(s) 855, 900
EgeI GGCGCC 1 cut(s) 436
EheI GGCGCC 1 cut(s) 436
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 147, 259, 883
FaiI YATR 6 cut(s) 145, 257, 560, 875, 881, 986
FatI CATG 3 cut(s) 143, 255, 879
Fnu4HI GCNGC 8 cut(s) 104, 292, 370, 433, 547, 711, 732, 945
FokI GGATG 3 cut(s) 359, 847, 896
FriOI GRGCYC 2 cut(s) 855, 900
Fsp4HI GCNGC 8 cut(s) 104, 292, 370, 433, 547, 711, 732, 945
FspBI CTAG 1 cut(s) 750
GlaI GCGC 3 cut(s) 72, 148, 436
GluI GCNGC 8 cut(s) 104, 292, 370, 433, 547, 711, 732, 945
GsuI CTGGAG 1 cut(s) 842
HaeII RGCGCY 2 cut(s) 74, 438
HaeIII GGCC 7 cut(s) 88, 134, 291, 338, 404, 522, 535
HapII CCGG 5 cut(s) 85, 119, 284, 519, 588
HgaI GACGC 2 cut(s) 323, 416
HhaI GCGC 3 cut(s) 73, 149, 437
Hin1I GRCGYC 5 cut(s) 110, 315, 408, 435, 456
Hin1II CATG 3 cut(s) 147, 259, 883
Hin6I GCGC 3 cut(s) 71, 147, 435
HinP1I GCGC 3 cut(s) 71, 147, 435
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 652
HpaI GTTAAC 1 cut(s) 415
HpaII CCGG 5 cut(s) 85, 119, 284, 519, 588
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 5 cut(s) 62, 275, 415, 528, 669
Hpy188I TCNGA 4 cut(s) 160, 384, 662, 957
Hpy188III TCNNGA 2 cut(s) 448, 901
Hpy8I GTNNAC 5 cut(s) 62, 275, 415, 528, 669
Hpy99I CGWCG 4 cut(s) 299, 410, 695, 698
HpyAV CCTTC 4 cut(s) 43, 179, 388, 547
HpyCH4III ACNGT 1 cut(s) 302
HpyCH4IV ACGT 5 cut(s) 110, 320, 456, 482, 530
HpyCH4V TGCA 6 cut(s) 6, 62, 129, 465, 738, 862
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 100, 323, 471, 626, 684, 859
HpyF3I CTNAG 1 cut(s) 623
HpySE526I ACGT 5 cut(s) 110, 320, 456, 482, 530
Hsp92I GRCGYC 5 cut(s) 110, 315, 408, 435, 456
Hsp92II CATG 3 cut(s) 147, 259, 883
HspAI GCGC 3 cut(s) 71, 147, 435
KasI GGCGCC 1 cut(s) 434
KroI GCCGGC 1 cut(s) 118
KroNI GCCGGC 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 415
KspI CCGCGG 1 cut(s) 370
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 5 cut(s) 206, 728, 817, 850, 895
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 2 cut(s) 381, 483
MaeI CTAG 1 cut(s) 750
MaeII ACGT 5 cut(s) 110, 320, 456, 482, 530
MaeIII GTNAC 1 cut(s) 111
MalI GATC 1 cut(s) 162
MbiI CCGCTC 1 cut(s) 731
MboI GATC 1 cut(s) 160
MboII GAAGA 4 cut(s) 499, 916, 919, 927
MhlI GDGCHC 3 cut(s) 64, 855, 900
MluCI AATT 6 cut(s) 681, 743, 756, 793, 970, 976
Mly113I GGCGCC 1 cut(s) 435
MmeI TCCRAC 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 118
MseI TTAA 3 cut(s) 66, 362, 414
MspA1I CMGCKG 2 cut(s) 106, 369
MspI CCGG 5 cut(s) 85, 119, 284, 519, 588
MspR9I CCNGG 3 cut(s) 284, 340, 519
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 3 cut(s) 294, 369, 857
MwoI GCNNNNNNNGC 7 cut(s) 68, 100, 323, 471, 626, 684, 859
NaeI GCCGGC 1 cut(s) 120
NarI GGCGCC 1 cut(s) 435
NciI CCSGG 2 cut(s) 284, 519
NcoI CCATGG 1 cut(s) 255
NdeII GATC 1 cut(s) 160
NgoMIV GCCGGC 1 cut(s) 118
NlaIII CATG 3 cut(s) 147, 259, 883
NlaIV GGNNCC 4 cut(s) 236, 436, 667, 943
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 111
NspV TTCGAA 2 cut(s) 761, 797
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PctI GAATGC 1 cut(s) 931
PdiI GCCGGC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 652
PkrI GCNGC 8 cut(s) 105, 293, 371, 434, 548, 712, 733, 946
PluTI GGCGCC 1 cut(s) 438
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
Ppu21I YACGTR 1 cut(s) 531
PshAI GACNNNNGTC 1 cut(s) 455
Psp124BI GAGCTC 2 cut(s) 855, 900
Psp6I CCWGG 1 cut(s) 338
PspCI CACGTG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 4 cut(s) 236, 436, 667, 943
PspPI GGNCC 3 cut(s) 259, 534, 666
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 4 cut(s) 274, 497, 779, 926
RsaNI GTAC 4 cut(s) 273, 496, 778, 925
SacI GAGCTC 2 cut(s) 855, 900
SacII CCGCGG 1 cut(s) 370
SaqAI TTAA 3 cut(s) 66, 362, 414
SatI GCNGC 8 cut(s) 104, 292, 370, 433, 547, 711, 732, 945
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 3 cut(s) 259, 534, 666
ScaI AGTACT 1 cut(s) 926
ScrFI CCNGG 3 cut(s) 284, 340, 519
SduI GDGCHC 3 cut(s) 64, 855, 900
SfaNI GCATC 2 cut(s) 381, 483
SfoI GGCGCC 1 cut(s) 436
Sfr303I CCGCGG 1 cut(s) 370
SfuI TTCGAA 2 cut(s) 761, 797
SgrAI CRCCGGYG 1 cut(s) 587
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 2 cut(s) 259, 666
Sse9I AATT 6 cut(s) 681, 743, 756, 793, 970, 976
SspDI GGCGCC 1 cut(s) 434
SspMI CTAG 1 cut(s) 750
SstI GAGCTC 2 cut(s) 855, 900
StyD4I CCNGG 3 cut(s) 282, 338, 517
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 302
TaiI ACGT 5 cut(s) 113, 323, 459, 485, 533
TaqI TCGA 5 cut(s) 477, 512, 761, 797, 843
TasI AATT 6 cut(s) 681, 743, 756, 793, 970, 976
TatI WGTACW 2 cut(s) 495, 924
TauI GCSGC 7 cut(s) 294, 372, 435, 549, 713, 734, 947
TfiI GAWTC 1 cut(s) 652
Tru1I TTAA 3 cut(s) 66, 362, 414
Tru9I TTAA 3 cut(s) 66, 362, 414
TscAI CASTG 3 cut(s) 120, 467, 631
TseFI GTSAC 1 cut(s) 111
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 161, 868, 926
TspGWI ACGGA 2 cut(s) 368, 467
TspRI CASTG 3 cut(s) 120, 467, 631
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 259, 666
XapI RAATTY 2 cut(s) 793, 976
XspI CTAG 1 cut(s) 750
ZraI GACGTC 2 cut(s) 111, 457
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.