pycom07g20330
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0008985
Physical Location & Seq
Forward (+)
22471574 .. 22472299
726 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20330.1

Sequence Viewer

Length: 726 bp
ATGAACCGCCGAACCCGTACCCACGCCCCGGCTGGCCGCGAGGACTGTTGGAACGAAGCTGACACGGAGGCACTAATAACGGCCTGGGGCGACCGTTACCTCCATTTAAACCACGGCATCCTCCGTCAGAAAGAGTGGAAGGAGGTGGCTGACGCCGTTAATTCCACTCAAAATGGCGGCGTCAAGCCGTCCAAGACAGACGTCCAGTGCAGGAACCGCATCGACACGTTGAAGAAAAAGTACAAGCTGGAGAAGTCGAAGCCCGGCCCGTCCAAGTGGCCCTTCTACCGCCGCCTCCACTCCCTTATCTGCTCAACTCCCTCAAACGCCGCCGTATCTACCGAATCAAAACCCCCAATCCTCGCTCTCACTGGCAAATCCCCCGACCCAAGTCCGTATCCCCTCGAAGGGTCTCGCCGCGACGACGGTGGTGATGAGGCGGCGGGGTTATCGGTTGGAGCGGTGTGCAGGGAATTGGCGAGGGCAATTTCCAGATTTGGGGAAATGTACGAGAGGATTGAGAATTCGAAGCGGAAGCAGATGATGGAGCTGGAGAAGCAGAGAATGGAGTTCGACAAGGAGCTCGAGTTGCAGAGGTTGAATATGTTCATGGATGTTCAGGTGGAGCTCGGGAAGAAGATGAAGCTCCCCACGTACTCACATTCTTCAGGTCCCGCCATTGCTGAGAGCTTCATGAGTAGTTTCTTGGTTATATTTGACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

242

Amino Acids

27.38

Weight (kDa)

9.2

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 102 6.7e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccBSI CCGCTC 1 cut(s) 461
AccII CGCG 2 cut(s) 39, 420
AcoI YGGCCR 1 cut(s) 34
AcsI RAATTY 1 cut(s) 523
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 3 cut(s) 153, 180, 201
AfaI GTAC 4 cut(s) 19, 242, 509, 656
AfiI CCNNNNNNNGG 4 cut(s) 28, 407, 408, 498
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 2 cut(s) 232, 601
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 7 cut(s) 59, 247, 550, 583, 628, 646, 690
AluI AGCT 7 cut(s) 59, 247, 550, 583, 628, 646, 690
Alw21I GWGCWC 2 cut(s) 585, 630
Alw26I GTCTC 1 cut(s) 417
Ama87I CYCGRG 2 cut(s) 584, 629
AoxI GGCC 4 cut(s) 34, 81, 265, 278
ApoI RAATTY 1 cut(s) 523
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 3 cut(s) 266, 279, 671
AsuC2I CCSGG 2 cut(s) 29, 264
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 584, 629
AvaII GGWCC 1 cut(s) 671
BanII GRGCYC 2 cut(s) 585, 630
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
Bbv12I GWGCWC 2 cut(s) 585, 630
BccI CCATC 1 cut(s) 538
BceAI ACGGC 5 cut(s) 96, 130, 140, 172, 317
BciT130I CCWGG 1 cut(s) 85
BciVI GTATCC 1 cut(s) 408
BcnI CCSGG 2 cut(s) 29, 264
BcoDI GTCTC 1 cut(s) 417
BfuI GTATCC 1 cut(s) 408
BisI GCNGC 6 cut(s) 37, 178, 292, 330, 418, 441
BlsI GCNGC 6 cut(s) 38, 179, 293, 331, 419, 442
Bme1390I CCNGG 3 cut(s) 29, 85, 264
Bme18I GGWCC 1 cut(s) 671
BmeT110I CYCGRG 2 cut(s) 584, 629
BmgT120I GGNCC 3 cut(s) 266, 279, 671
BmiI GGNNCC 2 cut(s) 215, 673
BmrFI CCNGG 3 cut(s) 29, 85, 264
BmsI GCATC 2 cut(s) 126, 228
BoxI GACNNNNGTC 2 cut(s) 200, 390
BpmI CTGGAG 2 cut(s) 269, 572
Bpu14I TTCGAA 1 cut(s) 527
BpuMI CCSGG 2 cut(s) 29, 264
BsaAI YACGTR 1 cut(s) 654
BsaHI GRCGYC 3 cut(s) 153, 180, 201
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 27, 84, 112
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 4 cut(s) 28, 407, 408, 498
Bse1I ACTGG 2 cut(s) 205, 376
Bse3DI GCAATG 1 cut(s) 678
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 27, 84, 112
BseGI GGATG 2 cut(s) 117, 619
BseLI CCNNNNNNNGG 4 cut(s) 28, 407, 408, 498
BseMI GCAATG 1 cut(s) 678
BseMII CTCAG 1 cut(s) 675
BseNI ACTGG 2 cut(s) 205, 376
BsgI GTGCAG 2 cut(s) 229, 487
Bsh1236I CGCG 2 cut(s) 39, 420
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 36, 83, 267, 280
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 585, 630
BsiHKCI CYCGRG 2 cut(s) 584, 629
BsiSI CCGG 2 cut(s) 29, 264
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 4 cut(s) 28, 407, 408, 498
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 4 cut(s) 36, 83, 267, 280
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 584, 629
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 585, 630
BspANI GGCC 4 cut(s) 36, 83, 267, 280
BspCNI CTCAG 1 cut(s) 676
BspFNI CGCG 2 cut(s) 39, 420
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 215, 673
BspT104I TTCGAA 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 678
BsrI ACTGG 2 cut(s) 205, 376
BssECI CCNNGG 3 cut(s) 27, 84, 112
BssNI GRCGYC 3 cut(s) 153, 180, 201
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 4 cut(s) 47, 95, 428, 722
BstACI GRCGYC 3 cut(s) 153, 180, 201
BstBAI YACGTR 1 cut(s) 654
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 684
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 117, 619
BstFNI CGCG 2 cut(s) 39, 420
BstMAI GTCTC 1 cut(s) 417
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 216, 556, 589
BstNI CCWGG 1 cut(s) 85
BstPAI GACNNNNGTC 2 cut(s) 200, 390
BstSCI CCNGG 3 cut(s) 27, 83, 262
BstUI CGCG 2 cut(s) 39, 420
BsuI GTATCC 1 cut(s) 408
BsuRI GGCC 4 cut(s) 36, 83, 267, 280
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 2 cut(s) 117, 619
BtsIMutI CAGTG 2 cut(s) 212, 369
Cac8I GCNNGC 1 cut(s) 34
CciI TCATGA 1 cut(s) 693
Cfr13I GGNCC 3 cut(s) 266, 279, 671
CseI GACGC 2 cut(s) 161, 169
Csp6I GTAC 4 cut(s) 18, 241, 508, 655
CviAII CATG 2 cut(s) 610, 694
CviQI GTAC 4 cut(s) 18, 241, 508, 655
DdeI CTNAG 1 cut(s) 684
DraI TTTAAA 1 cut(s) 108
EaeI YGGCCR 1 cut(s) 34
Ecl136II GAGCTC 2 cut(s) 583, 628
Eco24I GRGCYC 2 cut(s) 585, 630
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 671
Eco53kI GAGCTC 2 cut(s) 583, 628
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 2 cut(s) 584, 629
EcoICRI GAGCTC 2 cut(s) 583, 628
EcoO109I RGGNCCY 1 cut(s) 671
EcoRI GAATTC 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 83
EcoT38I GRGCYC 2 cut(s) 585, 630
FaeI CATG 2 cut(s) 613, 697
FaiI YATR 4 cut(s) 605, 611, 695, 713
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 657
FatI CATG 2 cut(s) 609, 693
FauI CCCGC 2 cut(s) 436, 682
Fnu4HI GCNGC 6 cut(s) 37, 178, 292, 330, 418, 441
FokI GGATG 2 cut(s) 104, 626
FriOI GRGCYC 2 cut(s) 585, 630
Fsp4HI GCNGC 6 cut(s) 37, 178, 292, 330, 418, 441
GluI GCNGC 6 cut(s) 37, 178, 292, 330, 418, 441
GsuI CTGGAG 2 cut(s) 269, 572
HaeIII GGCC 4 cut(s) 36, 83, 267, 280
HapII CCGG 2 cut(s) 29, 264
HgaI GACGC 2 cut(s) 161, 169
Hin1I GRCGYC 3 cut(s) 153, 180, 201
Hin1II CATG 2 cut(s) 613, 697
HinfI GANTC 1 cut(s) 344
HpaII CCGG 2 cut(s) 29, 264
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 492, 631, 694
Hpy99I CGWCG 2 cut(s) 425, 428
HpyAV CCTTC 3 cut(s) 133, 292, 401
HpyCH4III ACNGT 4 cut(s) 47, 95, 428, 722
HpyCH4IV ACGT 3 cut(s) 201, 227, 653
HpyCH4V TGCA 3 cut(s) 210, 468, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 556, 589
HpyF3I CTNAG 1 cut(s) 684
HpySE526I ACGT 3 cut(s) 201, 227, 653
Hsp92I GRCGYC 3 cut(s) 153, 180, 201
Hsp92II CATG 2 cut(s) 613, 697
LmnI GCTCC 5 cut(s) 458, 547, 580, 625, 651
LweI GCATC 2 cut(s) 126, 228
MaeII ACGT 3 cut(s) 201, 227, 653
MaeIII GTNAC 1 cut(s) 95
MbiI CCGCTC 1 cut(s) 461
MboII GAAGA 4 cut(s) 244, 646, 649, 657
MhlI GDGCHC 2 cut(s) 585, 630
MluCI AATT 4 cut(s) 160, 473, 486, 523
MmeI TCCRAC 2 cut(s) 29, 436
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 3 cut(s) 107, 159, 724
MspI CCGG 2 cut(s) 29, 264
MspR9I CCNGG 3 cut(s) 29, 85, 264
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 39, 420
MwoI GCNNNNNNNGC 3 cut(s) 216, 556, 589
NciI CCSGG 2 cut(s) 29, 264
NlaIII CATG 2 cut(s) 613, 697
NlaIV GGNNCC 2 cut(s) 215, 673
NspV TTCGAA 1 cut(s) 527
PaeR7I CTCGAG 1 cut(s) 584
PagI TCATGA 1 cut(s) 693
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 1 cut(s) 344
PkrI GCNGC 6 cut(s) 38, 179, 293, 331, 419, 442
Ppu21I YACGTR 1 cut(s) 654
PpuMI RGGWCCY 1 cut(s) 671
PshAI GACNNNNGTC 2 cut(s) 200, 390
Psp124BI GAGCTC 2 cut(s) 585, 630
Psp5II RGGWCCY 1 cut(s) 671
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 215, 673
PspPI GGNCC 3 cut(s) 266, 279, 671
PspPPI RGGWCCY 1 cut(s) 671
PspXI VCTCGAGB 1 cut(s) 584
RsaI GTAC 4 cut(s) 19, 242, 509, 656
RsaNI GTAC 4 cut(s) 18, 241, 508, 655
SacI GAGCTC 2 cut(s) 585, 630
SaqAI TTAA 3 cut(s) 107, 159, 724
SatI GCNGC 6 cut(s) 37, 178, 292, 330, 418, 441
Sau96I GGNCC 3 cut(s) 266, 279, 671
ScrFI CCNGG 3 cut(s) 29, 85, 264
SduI GDGCHC 2 cut(s) 585, 630
SfaNI GCATC 2 cut(s) 126, 228
Sfr274I CTCGAG 1 cut(s) 584
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 1 cut(s) 671
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 4 cut(s) 160, 473, 486, 523
SstI GAGCTC 2 cut(s) 585, 630
StyD4I CCNGG 3 cut(s) 27, 83, 262
TaaI ACNGT 4 cut(s) 47, 95, 428, 722
TaiI ACGT 3 cut(s) 204, 230, 656
TaqI TCGA 6 cut(s) 222, 257, 405, 527, 573, 585
TasI AATT 4 cut(s) 160, 473, 486, 523
TatI WGTACW 1 cut(s) 240
TauI GCSGC 6 cut(s) 39, 180, 294, 332, 420, 443
TfiI GAWTC 1 cut(s) 344
Tru1I TTAA 3 cut(s) 107, 159, 724
Tru9I TTAA 3 cut(s) 107, 159, 724
TscAI CASTG 2 cut(s) 212, 376
TspDTI ATGAA 4 cut(s) 17, 598, 656, 682
TspGWI ACGGA 3 cut(s) 80, 113, 384
TspRI CASTG 2 cut(s) 212, 376
VpaK11BI GGWCC 1 cut(s) 671
XapI RAATTY 1 cut(s) 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 605
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.