Rh1AG368000
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008985
Physical Location & Seq
Forward (+)
60245032 .. 60245934
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG368000.1

Sequence Viewer

Length: 705 bp
ATGGAGCGCCCGACCCGGCCCTACGCCCCGGGCGGCCGCGAGGACTGCTGGAGCGACGACGCCACGTCAGTGCTGATAACGGCGTGGGGCGACCGTTACCTCCGCCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGAAGGAGGTGGCGGACTCCGTCAACTCCCGCCGCGACGGCGCCGTTTTCAAGACCGACGGGCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGCTCGAAAAGTCCAAGCCGTTCCCCTCCACGTGGATCTTCTACGACAGCCTCGACTCGCTCATCGGAGTCCCCTCCTCAAACGCCGCCGCTTTGACAAGACCCCCGAAGCCACTCACACTCGCCCTGACCCTCAAGTCCGCCGCCGACCCCAGTCCCCTGGGTTTCCGCCGCTGCGGCTCCACGGAGAGCGACGGCGAGGATGACGTGGAGGGGGGAGGAGTAGGGTTGGCGGGTGGGGCGGCGTGTAGGGAACTGGCGAGGGCGATCTTGAAGTTCGGGGAGATTTATGAGAGGATGGAGAGTTCCAAGCAGGAGCAGATGGTTGAACTGGAGAAGCAGAGGATGGCTTTCACTAAGGAACTTGAGGTGCAGAGGTTGAATATGTTTATGGATGCTCAATTGGAGCTGGAGAAGATGAAGAAGCGCCCCAAATACTCAAAGCATTCTTCCGGAAAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

234

Amino Acids

26.31

Weight (kDa)

9.25

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 100 4.7e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 3 cut(s) 39, 114, 171
AccIII TCCGGA 1 cut(s) 689
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 245
AcvI CACGTG 1 cut(s) 270
AcyI GRCGYC 2 cut(s) 60, 177
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 130, 270
AgsI TTSAA 4 cut(s) 187, 511, 566, 619
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 2 cut(s) 66, 445
AjnI CCWGG 1 cut(s) 396
AleI CACNNNNGTG 1 cut(s) 68
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 2 cut(s) 241, 646
AluI AGCT 2 cut(s) 241, 646
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 689
AoxI GGCC 2 cut(s) 17, 34
ApeKI GCWGC 1 cut(s) 411
AspLEI GCGC 3 cut(s) 9, 179, 666
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 3 cut(s) 16, 29, 30
AvaI CYCGRG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbrPI CACGTG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 398
BccI CCATC 3 cut(s) 529, 553, 577
BceAI ACGGC 5 cut(s) 96, 164, 190, 241, 448
BciT130I CCWGG 1 cut(s) 398
BcnI CCSGG 3 cut(s) 16, 29, 30
BfoI RGCGCY 3 cut(s) 10, 180, 667
BglI GCCNNNNNGGC 2 cut(s) 174, 414
Bme1390I CCNGG 4 cut(s) 16, 29, 30, 398
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 28
BmgBI CACGTC 2 cut(s) 66, 445
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 178, 418
BmrFI CCNGG 4 cut(s) 16, 29, 30, 398
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 390
BpmI CTGGAG 3 cut(s) 70, 590, 668
BpuEI CTTGAG 2 cut(s) 356, 623
BpuMI CCSGG 3 cut(s) 16, 29, 30
BsaAI YACGTR 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 60, 177
BsaJI CCNNGG 6 cut(s) 27, 28, 112, 396, 397, 420
BsaWI WCCGGW 1 cut(s) 689
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 270
Bse1I ACTGG 4 cut(s) 140, 390, 498, 573
BseAI TCCGGA 1 cut(s) 689
BseBI CCWGG 1 cut(s) 398
BseDI CCNNGG 6 cut(s) 27, 28, 112, 396, 397, 420
BseGI GGATG 4 cut(s) 445, 540, 588, 637
BseLI CCNNNNNNNGG 2 cut(s) 130, 270
BseNI ACTGG 4 cut(s) 140, 390, 498, 573
BseRI GAGGAG 2 cut(s) 304, 471
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 3 cut(s) 39, 114, 171
Bsh1285I CGRYCG 2 cut(s) 37, 94
BshFI GGCC 2 cut(s) 19, 36
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 2 cut(s) 37, 94
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 16, 29, 690
BslFI GGGAC 2 cut(s) 293, 378
BslI CCNNNNNNNGG 2 cut(s) 130, 270
BsmFI GGGAC 2 cut(s) 293, 378
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 2 cut(s) 19, 36
BsoBI CYCGRG 1 cut(s) 28
Bsp13I TCCGGA 1 cut(s) 689
Bsp143I GATC 2 cut(s) 273, 504
BspANI GGCC 2 cut(s) 19, 36
BspEI TCCGGA 1 cut(s) 689
BspFNI CGCG 3 cut(s) 39, 114, 171
BspLI GGNNCC 2 cut(s) 178, 418
BspPI GGATC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 4 cut(s) 140, 390, 498, 573
BssECI CCNNGG 6 cut(s) 27, 28, 112, 396, 397, 420
BssMI GATC 2 cut(s) 273, 504
BssNI GRCGYC 2 cut(s) 60, 177
Bst2UI CCWGG 1 cut(s) 398
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 60, 177
BstBAI YACGTR 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 594
BstDSI CCRYGG 2 cut(s) 112, 420
BstF5I GGATG 4 cut(s) 445, 540, 588, 637
BstFNI CGCG 3 cut(s) 39, 114, 171
BstH2I RGCGCY 3 cut(s) 10, 180, 667
BstHHI GCGC 3 cut(s) 9, 179, 666
BstKTI GATC 2 cut(s) 276, 507
BstMBI GATC 2 cut(s) 273, 504
BstMCI CGRYCG 2 cut(s) 37, 94
BstMWI GCNNNNNNNGC 6 cut(s) 45, 111, 123, 174, 414, 476
BstNI CCWGG 1 cut(s) 398
BstPAI GACNNNNGTC 1 cut(s) 390
BstSCI CCNGG 4 cut(s) 14, 27, 28, 396
BstUI CGCG 3 cut(s) 39, 114, 171
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 2 cut(s) 19, 36
BtgI CCRYGG 2 cut(s) 112, 420
BtrI CACGTC 2 cut(s) 66, 445
BtsCI GGATG 4 cut(s) 445, 540, 588, 637
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 75, 206
CciNI GCGGCCGC 1 cut(s) 34
CfoI GCGC 3 cut(s) 9, 179, 666
Cfr13I GGNCC 1 cut(s) 18
Cfr42I CCGCGG 1 cut(s) 115
Cfr9I CCCGGG 1 cut(s) 28
CseI GACGC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 9 cut(s) 19, 36, 241, 256, 288, 349, 417, 587, 646
CviKI_1 RGCY 9 cut(s) 19, 36, 241, 256, 288, 349, 417, 587, 646
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 594
DinI GGCGCC 1 cut(s) 178
DpnI GATC 2 cut(s) 275, 506
DpnII GATC 2 cut(s) 273, 504
DrdI GACNNNNNNGTC 1 cut(s) 373
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 5 cut(s) 92, 113, 164, 367, 395
EclXI CGGCCG 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 396
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
FaiI YATR 3 cut(s) 528, 623, 629
FaqI GGGAC 2 cut(s) 293, 378
FauI CCCGC 2 cut(s) 173, 463
FokI GGATG 4 cut(s) 452, 547, 595, 644
GlaI GCGC 3 cut(s) 8, 178, 665
GsuI CTGGAG 3 cut(s) 70, 590, 668
HaeII RGCGCY 3 cut(s) 10, 180, 667
HaeIII GGCC 2 cut(s) 19, 36
HapII CCGG 3 cut(s) 16, 29, 690
HgaI GACGC 1 cut(s) 68
HhaI GCGC 3 cut(s) 9, 179, 666
Hin1I GRCGYC 2 cut(s) 60, 177
Hin6I GCGC 3 cut(s) 7, 177, 664
HinP1I GCGC 3 cut(s) 7, 177, 664
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 4 cut(s) 152, 213, 293, 306
HpaII CCGG 3 cut(s) 16, 29, 690
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 3 cut(s) 187, 508, 690
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 5 cut(s) 59, 62, 176, 197, 434
HpyAV CCTTC 2 cut(s) 124, 133
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 3 cut(s) 65, 269, 444
HpyCH4V TGCA 2 cut(s) 204, 610
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 111, 123, 174, 414, 476
HpyF3I CTNAG 1 cut(s) 594
HpySE526I ACGT 3 cut(s) 65, 269, 444
Hsp92I GRCGYC 2 cut(s) 60, 177
HspAI GCGC 3 cut(s) 7, 177, 664
KasI GGCGCC 1 cut(s) 176
Kpn2I TCCGGA 1 cut(s) 689
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 2 cut(s) 273, 504
LmnI GCTCC 5 cut(s) 4, 51, 422, 553, 643
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 1 cut(s) 622
MaeII ACGT 3 cut(s) 65, 269, 444
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 275, 506
MboI GATC 2 cut(s) 273, 504
MboII GAAGA 6 cut(s) 238, 241, 268, 664, 670, 678
MfeI CAATTG 1 cut(s) 638
MflI RGATCY 1 cut(s) 273
MluCI AATT 1 cut(s) 638
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 3 cut(s) 146, 287, 315
MroI TCCGGA 1 cut(s) 689
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 114, 411
MspI CCGG 3 cut(s) 16, 29, 690
MspR9I CCNGG 4 cut(s) 16, 29, 30, 398
MunI CAATTG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 398
MvnI CGCG 3 cut(s) 39, 114, 171
MwoI GCNNNNNNNGC 6 cut(s) 45, 111, 123, 174, 414, 476
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 3 cut(s) 16, 29, 30
NdeII GATC 2 cut(s) 273, 504
NlaIV GGNNCC 2 cut(s) 178, 418
NotI GCGGCCGC 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 155
PleI GAGTC 3 cut(s) 146, 287, 314
PluTI GGCGCC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 3 cut(s) 146, 287, 314
Ppu21I YACGTR 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 396
PspCI CACGTG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 396
PspN4I GGNNCC 2 cut(s) 178, 418
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 68
SacII CCGCGG 1 cut(s) 115
Sau3AI GATC 2 cut(s) 273, 504
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 3 cut(s) 146, 287, 315
ScrFI CCNGG 4 cut(s) 16, 29, 30, 398
SfaNI GCATC 1 cut(s) 622
SfoI GGCGCC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SmaI CCCGGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 371, 602
SmoI CTYRAG 2 cut(s) 371, 602
Sse9I AATT 1 cut(s) 638
SspDI GGCGCC 1 cut(s) 176
StyD4I CCNGG 4 cut(s) 14, 27, 28, 396
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 3 cut(s) 68, 272, 447
TaqI TCGA 3 cut(s) 216, 243, 291
TaqII GACCGA 1 cut(s) 206
TasI AATT 1 cut(s) 638
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 2 cut(s) 75, 206
TseI GCWGC 1 cut(s) 411
TspDTI ATGAA 1 cut(s) 671
TspGWI ACGGA 2 cut(s) 145, 437
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 2 cut(s) 75, 206
Tth111I GACNNNGTC 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.