Rh1DG362900
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008985
Physical Location & Seq
Forward (+)
58975650 .. 58976786
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG362900.1

Sequence Viewer

Length: 936 bp
ATGTTGGAAACCAAGCAGTTCCACATGGTTAAACTGGAACAGTTAGTAGTCTGTCCAAACCCAATAGGAAACCTGACGTCACCGCCGGTCGAATCCACGGCCAGATTTCCATTCCCTTTCCGAGCCCGATCCTTTTCCCCATCTCTCACCCACTCCCCTACATCACCTCTCGCTTCCACTCCAACAGTTCAACTCTCTCTCTCTCTCTCTCTCTCAACCCGAACCCGACCCATGGAGCGCCCGACCCGGCCCTACGCCCCGGGCGGCCGCGAGGACTGCTGGAGCGACGACGCCACGTCAGTGCTGATAACGGCTTGGGGCGACCGTTACCTCCGCCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGAAGGAGGTGGCGGACGCCGTCAACTCCCGCCGCGACGGCGCCGTTTTCAAGACCGACGGCCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGCTCGAAAAGTCCAAGCCCTTCCCCTCCACGTGGATCTTCTACAACAGCCTCGACTCGCTCATCGGAGTCCCCTCCTCAAACGCCGCCGTTCTGACCAGACCCCCGAAGCCACTCACACTCGCCCTGACCCTCAAGTCCGCCGCCGACCCCAGTCCCCTGGGTTTCCGCCGCTGCGGCTCCACGGAGAGCGACGGCGAGGATGACGGGGAGGGGGGAGGAGTAGGGTTGGCGGGTGGGGCGGCGTGTAGGGAATTGGCGAGGGCGATTTTGAAGTTCGGGGAGATTTATGAGAGGATGGAGAGTTCCAAGCAGGAGCAGATGGTTGAACTGGAGAAGCAGAGGATGGCTTTCACTAAGGAACTTGAGGTGCAGAGGTTGAATATGTTTATGGATGCTCAATTGGAGCTGGAGAAGATGAAGAAGCGCCCCAAATACTCAAAGCATTCTTCCGGAAAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

311

Amino Acids

34.73

Weight (kDa)

9.54

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 92 - 177 4.7e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 604
AatII GACGTC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 407
AccII CGCG 3 cut(s) 270, 345, 402
AccIII TCCGGA 1 cut(s) 920
AclWI GGATC 2 cut(s) 123, 512
AcoI YGGCCR 3 cut(s) 99, 265, 427
AcuI CTGAAG 1 cut(s) 476
AcvI CACGTG 1 cut(s) 501
AcyI GRCGYC 4 cut(s) 77, 291, 384, 408
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 3 cut(s) 232, 361, 501
AgsI TTSAA 5 cut(s) 191, 418, 742, 797, 850
AhdI GACNNNNNGTC 1 cut(s) 295
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 627
AleI CACNNNNGTG 1 cut(s) 299
AloI GAACNNNNNNTCC 2 cut(s) 757, 789
AluBI AGCT 2 cut(s) 472, 877
AluI AGCT 2 cut(s) 472, 877
AlwI GGATC 2 cut(s) 123, 512
Ama87I CYCGRG 1 cut(s) 259
Aor13HI TCCGGA 1 cut(s) 920
AoxI GGCC 4 cut(s) 99, 248, 265, 427
ApeKI GCWGC 1 cut(s) 642
AspLEI GCGC 3 cut(s) 240, 410, 897
AspS9I GGNCC 1 cut(s) 249
AsuC2I CCSGG 3 cut(s) 247, 260, 261
AsuHPI GGTGA 3 cut(s) 72, 139, 156
AvaI CYCGRG 1 cut(s) 259
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 449, 481
BbrPI CACGTG 1 cut(s) 501
BbvI GCAGC 1 cut(s) 629
BccI CCATC 4 cut(s) 148, 760, 784, 808
BceAI ACGGC 8 cut(s) 114, 327, 371, 395, 421, 442, 542, 679
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 3 cut(s) 247, 260, 261
BfoI RGCGCY 3 cut(s) 241, 411, 898
BglI GCCNNNNNGGC 2 cut(s) 405, 645
Bme1390I CCNGG 4 cut(s) 247, 260, 261, 629
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 409, 649
BmrFI CCNGG 4 cut(s) 247, 260, 261, 629
BmrI ACTGGG 1 cut(s) 615
BmsI GCATC 1 cut(s) 853
BmuI ACTGGG 1 cut(s) 615
BoxI GACNNNNGTC 1 cut(s) 621
BpmI CTGGAG 3 cut(s) 301, 821, 899
BpuEI CTTGAG 2 cut(s) 587, 854
BpuMI CCSGG 3 cut(s) 247, 260, 261
BsaAI YACGTR 1 cut(s) 501
BsaHI GRCGYC 4 cut(s) 77, 291, 384, 408
BsaJI CCNNGG 8 cut(s) 96, 231, 258, 259, 343, 627, 628, 651
BsaWI WCCGGW 1 cut(s) 920
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 361, 501
Bse118I RCCGGY 1 cut(s) 85
Bse1I ACTGG 5 cut(s) 39, 371, 430, 621, 804
BseAI TCCGGA 1 cut(s) 920
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 8 cut(s) 96, 231, 258, 259, 343, 627, 628, 651
BseGI GGATG 4 cut(s) 676, 771, 819, 868
BseLI CCNNNNNNNGG 3 cut(s) 232, 361, 501
BseNI ACTGG 5 cut(s) 39, 371, 430, 621, 804
BseRI GAGGAG 2 cut(s) 535, 702
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 860
Bsh1236I CGCG 3 cut(s) 270, 345, 402
Bsh1285I CGRYCG 3 cut(s) 90, 268, 325
BshFI GGCC 4 cut(s) 101, 250, 267, 429
BshNI GGYRCC 1 cut(s) 407
BsiEI CGRYCG 3 cut(s) 90, 268, 325
BsiHKCI CYCGRG 1 cut(s) 259
BsiSI CCGG 4 cut(s) 86, 247, 260, 921
BslFI GGGAC 2 cut(s) 524, 609
BslI CCNNNNNNNGG 3 cut(s) 232, 361, 501
BsmFI GGGAC 2 cut(s) 524, 609
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 4 cut(s) 101, 250, 267, 429
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 127
Bsp13I TCCGGA 1 cut(s) 920
Bsp143I GATC 2 cut(s) 128, 504
Bsp19I CCATGG 1 cut(s) 231
BspANI GGCC 4 cut(s) 101, 250, 267, 429
BspEI TCCGGA 1 cut(s) 920
BspFNI CGCG 3 cut(s) 270, 345, 402
BspLI GGNNCC 2 cut(s) 409, 649
BspPI GGATC 2 cut(s) 123, 512
BspT107I GGYRCC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 85
BsrI ACTGG 5 cut(s) 39, 371, 430, 621, 804
BssAI RCCGGY 1 cut(s) 85
BssECI CCNNGG 8 cut(s) 96, 231, 258, 259, 343, 627, 628, 651
BssMI GATC 2 cut(s) 128, 504
BssNI GRCGYC 4 cut(s) 77, 291, 384, 408
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 3 cut(s) 42, 187, 326
BstACI GRCGYC 4 cut(s) 77, 291, 384, 408
BstBAI YACGTR 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 825
BstDSI CCRYGG 4 cut(s) 96, 231, 343, 651
BstF5I GGATG 4 cut(s) 676, 771, 819, 868
BstFNI CGCG 3 cut(s) 270, 345, 402
BstH2I RGCGCY 3 cut(s) 241, 411, 898
BstHHI GCGC 3 cut(s) 240, 410, 897
BstKTI GATC 2 cut(s) 131, 507
BstMBI GATC 2 cut(s) 128, 504
BstMCI CGRYCG 3 cut(s) 90, 268, 325
BstMWI GCNNNNNNNGC 6 cut(s) 276, 342, 354, 405, 645, 707
BstNI CCWGG 1 cut(s) 629
BstPAI GACNNNNGTC 1 cut(s) 621
BstSCI CCNGG 4 cut(s) 245, 258, 259, 627
BstUI CGCG 3 cut(s) 270, 345, 402
BstV1I GCAGC 1 cut(s) 629
BstX2I RGATCY 1 cut(s) 504
BstXI CCANNNNNNTGG 1 cut(s) 628
BstYI RGATCY 1 cut(s) 504
BstZI CGGCCG 1 cut(s) 265
BsuRI GGCC 4 cut(s) 101, 250, 267, 429
BtgI CCRYGG 4 cut(s) 96, 231, 343, 651
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 4 cut(s) 676, 771, 819, 868
BtsIMutI CAGTG 2 cut(s) 306, 437
CciNI GCGGCCGC 1 cut(s) 265
CfoI GCGC 3 cut(s) 240, 410, 897
Cfr10I RCCGGY 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 249
Cfr42I CCGCGG 1 cut(s) 346
Cfr9I CCCGGG 1 cut(s) 259
CseI GACGC 2 cut(s) 299, 392
Csp6I GTAC 1 cut(s) 466
CviAII CATG 2 cut(s) 25, 232
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 825
DinI GGCGCC 1 cut(s) 409
DpnI GATC 2 cut(s) 130, 506
DpnII GATC 2 cut(s) 128, 504
DrdI GACNNNNNNGTC 1 cut(s) 604
DriI GACNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 604
EaeI YGGCCR 3 cut(s) 99, 265, 427
EagI CGGCCG 1 cut(s) 265
Eam1105I GACNNNNNGTC 1 cut(s) 295
EciI GGCGGA 5 cut(s) 323, 344, 395, 598, 626
EclXI CGGCCG 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 127
Eco52I CGGCCG 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 476
Eco72I CACGTG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 127
EgeI GGCGCC 1 cut(s) 409
EheI GGCGCC 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 28, 235
FaiI YATR 5 cut(s) 26, 233, 759, 854, 860
FaqI GGGAC 2 cut(s) 524, 609
FatI CATG 2 cut(s) 24, 231
FauI CCCGC 2 cut(s) 404, 694
FokI GGATG 4 cut(s) 683, 778, 826, 875
FriOI GRGCYC 1 cut(s) 127
GlaI GCGC 3 cut(s) 239, 409, 896
GsuI CTGGAG 3 cut(s) 301, 821, 899
HaeII RGCGCY 3 cut(s) 241, 411, 898
HaeIII GGCC 4 cut(s) 101, 250, 267, 429
HapII CCGG 4 cut(s) 86, 247, 260, 921
HgaI GACGC 2 cut(s) 299, 392
HhaI GCGC 3 cut(s) 240, 410, 897
Hin1I GRCGYC 4 cut(s) 77, 291, 384, 408
Hin1II CATG 2 cut(s) 28, 235
Hin6I GCGC 3 cut(s) 238, 408, 895
HinP1I GCGC 3 cut(s) 238, 408, 895
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 4 cut(s) 92, 444, 524, 537
HpaII CCGG 4 cut(s) 86, 247, 260, 921
HphI GGTGA 3 cut(s) 72, 139, 156
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 122, 536, 564
Hpy188III TCNNGA 2 cut(s) 418, 921
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 5 cut(s) 290, 293, 407, 428, 665
HpyAV CCTTC 3 cut(s) 355, 364, 499
HpyCH4III ACNGT 3 cut(s) 42, 187, 326
HpyCH4IV ACGT 3 cut(s) 77, 296, 500
HpyCH4V TGCA 2 cut(s) 435, 841
HpyF10VI GCNNNNNNNGC 6 cut(s) 276, 342, 354, 405, 645, 707
HpyF3I CTNAG 1 cut(s) 825
HpySE526I ACGT 3 cut(s) 77, 296, 500
Hsp92I GRCGYC 4 cut(s) 77, 291, 384, 408
Hsp92II CATG 2 cut(s) 28, 235
HspAI GCGC 3 cut(s) 238, 408, 895
KasI GGCGCC 1 cut(s) 407
Kpn2I TCCGGA 1 cut(s) 920
KspI CCGCGG 1 cut(s) 346
Kzo9I GATC 2 cut(s) 128, 504
LmnI GCTCC 5 cut(s) 235, 282, 653, 784, 874
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 1 cut(s) 853
MaeII ACGT 3 cut(s) 77, 296, 500
MaeIII GTNAC 2 cut(s) 78, 326
MalI GATC 2 cut(s) 130, 506
MboI GATC 2 cut(s) 128, 504
MboII GAAGA 6 cut(s) 469, 472, 499, 895, 901, 909
MfeI CAATTG 1 cut(s) 869
MflI RGATCY 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 722, 869
Mly113I GGCGCC 1 cut(s) 408
MlyI GAGTC 2 cut(s) 518, 546
MmeI TCCRAC 1 cut(s) 206
MroI TCCGGA 1 cut(s) 920
MseI TTAA 1 cut(s) 30
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 2 cut(s) 345, 642
MspI CCGG 4 cut(s) 86, 247, 260, 921
MspR9I CCNGG 4 cut(s) 247, 260, 261, 629
MunI CAATTG 1 cut(s) 869
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 3 cut(s) 270, 345, 402
MwoI GCNNNNNNNGC 6 cut(s) 276, 342, 354, 405, 645, 707
NarI GGCGCC 1 cut(s) 408
NciI CCSGG 3 cut(s) 247, 260, 261
NcoI CCATGG 1 cut(s) 231
NdeII GATC 2 cut(s) 128, 504
NlaIII CATG 2 cut(s) 28, 235
NlaIV GGNNCC 2 cut(s) 409, 649
NmuCI GTSAC 1 cut(s) 78
NotI GCGGCCGC 1 cut(s) 265
OliI CACNNNNGTG 1 cut(s) 299
PasI CCCWGGG 1 cut(s) 628
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 2 cut(s) 92, 444
PflFI GACNNNGTC 1 cut(s) 386
PleI GAGTC 2 cut(s) 518, 545
PluTI GGCGCC 1 cut(s) 411
PmaCI CACGTG 1 cut(s) 501
PmlI CACGTG 1 cut(s) 501
PpsI GAGTC 2 cut(s) 518, 545
Ppu21I YACGTR 1 cut(s) 501
PshAI GACNNNNGTC 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 627
PspCI CACGTG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 2 cut(s) 409, 649
PspPI GGNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 504
PsyI GACNNNGTC 1 cut(s) 386
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 299
SacII CCGCGG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 30
Sau3AI GATC 2 cut(s) 128, 504
Sau96I GGNCC 1 cut(s) 249
SchI GAGTC 2 cut(s) 518, 546
ScrFI CCNGG 4 cut(s) 247, 260, 261, 629
SduI GDGCHC 1 cut(s) 127
SfaNI GCATC 1 cut(s) 853
SfoI GGCGCC 1 cut(s) 409
Sfr303I CCGCGG 1 cut(s) 346
SgrBI CCGCGG 1 cut(s) 346
SmaI CCCGGG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 602, 833
SmoI CTYRAG 2 cut(s) 602, 833
Sse9I AATT 2 cut(s) 722, 869
SspDI GGCGCC 1 cut(s) 407
StyD4I CCNGG 4 cut(s) 245, 258, 259, 627
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 3 cut(s) 42, 187, 326
TaiI ACGT 3 cut(s) 80, 299, 503
TaqI TCGA 4 cut(s) 90, 447, 474, 522
TaqII GACCGA 1 cut(s) 437
TasI AATT 2 cut(s) 722, 869
TatI WGTACW 1 cut(s) 465
TauI GCSGC 9 cut(s) 267, 270, 348, 402, 557, 614, 642, 648, 713
TfiI GAWTC 2 cut(s) 92, 444
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 2 cut(s) 306, 437
TseFI GTSAC 1 cut(s) 78
TseI GCWGC 1 cut(s) 642
Tsp45I GTSAC 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 902
TspGWI ACGGA 1 cut(s) 668
TspMI CCCGGG 1 cut(s) 259
TspRI CASTG 2 cut(s) 306, 437
Tth111I GACNNNGTC 1 cut(s) 386
XmaI CCCGGG 1 cut(s) 259
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.