MD07G1224600.v1.1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0008985
Physical Location & Seq
Forward (+)
30140163 .. 30141394
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1224600.v1.1.491

Sequence Viewer

Length: 684 bp
ATGGACCGCCGAACCCGTACCCACGCCCCGGCTGGCCGCGAGGACTGTTGGAACGAGGCTGACACGGAGGCACTAATAACGGCCTGGGGCGACCGTTACGTCCATTTAAACCACGGCATCCTCCGTCAGAAAGAGTGGAAGGAGGTGGCTGACGCCGTTAATTCCACTCAAAATGGCGGCGTCAAGCCGTCCAAGACAGACGTCCAGTGCAGGAACCGCATCGACACGTTGAAGAAAAAGTACAAGCTGGAGAAGTCGAAGCCCGGCCCGTCCAAGTGGCCCTTCTACCGCCGCCTCCACTCCCTAATCTGCTCAACTCCCTCAAACGCCACCGTATCTACCGACTCAAAACCCCCAATCCTCGCTCTCACTGGCAAATCCCCCGACCCAAGTCCTTATCCCCTCAAAGGGTCTCGCCGCGACGACGGTGGTGATGAGGCGGCGGGGTTATCGGGTGGAGCGGCGTGCAGGGAATTGGCGAGGGCAATTTCGAGATTTGGGGAAATGTACGAGAGGATTGAGATTTCGAAGAGGAAGCAGATGATGGAGCTGGAGAAGCAGAGAATGGAGTTCGACAAGGAGCTCGAGTTGCAGAGGTTGAATATGTTCATGGATGTTCAGGTGGAGCTCGGGAAGAAGATGAAGCTCCCAAAGTACTCACATGCTTCAGGGAAGAAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

228

Amino Acids

25.75

Weight (kDa)

9.55

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 102 7.7e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 204
AccBSI CCGCTC 1 cut(s) 461
AccII CGCG 2 cut(s) 39, 420
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 3 cut(s) 153, 180, 201
AfaI GTAC 4 cut(s) 19, 242, 509, 656
AfiI CCNNNNNNNGG 3 cut(s) 28, 407, 408
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 2 cut(s) 232, 601
AjnI CCWGG 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 5 cut(s) 247, 550, 583, 628, 646
AluI AGCT 5 cut(s) 247, 550, 583, 628, 646
Alw21I GWGCWC 2 cut(s) 585, 630
Alw26I GTCTC 1 cut(s) 417
Ama87I CYCGRG 2 cut(s) 584, 629
AoxI GGCC 4 cut(s) 34, 81, 265, 278
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 3 cut(s) 4, 266, 279
AsuC2I CCSGG 2 cut(s) 29, 264
AsuHPI GGTGA 1 cut(s) 443
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 584, 629
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 2 cut(s) 585, 630
BarI GAAGNNNNNNTAC 2 cut(s) 224, 256
Bbv12I GWGCWC 2 cut(s) 585, 630
BccI CCATC 1 cut(s) 538
BceAI ACGGC 4 cut(s) 96, 130, 140, 172
BciT130I CCWGG 1 cut(s) 85
BcnI CCSGG 2 cut(s) 29, 264
BcoDI GTCTC 1 cut(s) 417
BisI GCNGC 6 cut(s) 37, 178, 292, 418, 441, 462
BlsI GCNGC 6 cut(s) 38, 179, 293, 419, 442, 463
BmcAI AGTACT 1 cut(s) 656
Bme1390I CCNGG 3 cut(s) 29, 85, 264
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 2 cut(s) 584, 629
BmgT120I GGNCC 3 cut(s) 4, 266, 279
BmiI GGNNCC 1 cut(s) 215
BmrFI CCNGG 3 cut(s) 29, 85, 264
BmsI GCATC 2 cut(s) 126, 228
BoxI GACNNNNGTC 2 cut(s) 200, 390
BpmI CTGGAG 2 cut(s) 269, 572
Bpu14I TTCGAA 1 cut(s) 527
BpuMI CCSGG 2 cut(s) 29, 264
BsaHI GRCGYC 3 cut(s) 153, 180, 201
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 3 cut(s) 27, 84, 112
BsaXI ACNNNNNCTCC 2 cut(s) 572, 602
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 407, 408
Bse1I ACTGG 2 cut(s) 205, 376
BseBI CCWGG 1 cut(s) 85
BseDI CCNNGG 3 cut(s) 27, 84, 112
BseGI GGATG 2 cut(s) 117, 619
BseLI CCNNNNNNNGG 3 cut(s) 28, 407, 408
BseNI ACTGG 2 cut(s) 205, 376
BsgI GTGCAG 2 cut(s) 229, 487
Bsh1236I CGCG 2 cut(s) 39, 420
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 36, 83, 267, 280
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 2 cut(s) 585, 630
BsiHKCI CYCGRG 2 cut(s) 584, 629
BsiSI CCGG 2 cut(s) 29, 264
BslI CCNNNNNNNGG 3 cut(s) 28, 407, 408
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 4 cut(s) 36, 83, 267, 280
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 2 cut(s) 584, 629
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 585, 630
BspANI GGCC 4 cut(s) 36, 83, 267, 280
BspFNI CGCG 2 cut(s) 39, 420
BspLI GGNNCC 1 cut(s) 215
BspT104I TTCGAA 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 417
BsrBI CCGCTC 1 cut(s) 461
BsrI ACTGG 2 cut(s) 205, 376
BssECI CCNNGG 3 cut(s) 27, 84, 112
BssNI GRCGYC 3 cut(s) 153, 180, 201
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 4 cut(s) 47, 95, 334, 428
Bst6I CTCTTC 1 cut(s) 524
BstACI GRCGYC 3 cut(s) 153, 180, 201
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 34, 466
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 117, 619
BstFNI CGCG 2 cut(s) 39, 420
BstMAI GTCTC 1 cut(s) 417
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 3 cut(s) 216, 556, 589
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 1 cut(s) 665
BstPAI GACNNNNGTC 2 cut(s) 200, 390
BstSCI CCNGG 3 cut(s) 27, 83, 262
BstUI CGCG 2 cut(s) 39, 420
BsuRI GGCC 4 cut(s) 36, 83, 267, 280
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 2 cut(s) 117, 619
BtsIMutI CAGTG 2 cut(s) 212, 369
Cac8I GCNNGC 2 cut(s) 34, 466
Cfr13I GGNCC 3 cut(s) 4, 266, 279
CseI GACGC 2 cut(s) 161, 169
Csp6I GTAC 4 cut(s) 18, 241, 508, 655
CviAII CATG 2 cut(s) 610, 662
CviQI GTAC 4 cut(s) 18, 241, 508, 655
DraI TTTAAA 1 cut(s) 108
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 524
EarI CTCTTC 1 cut(s) 524
Ecl136II GAGCTC 2 cut(s) 583, 628
Eco24I GRGCYC 2 cut(s) 585, 630
Eco31I GGTCTC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 2 cut(s) 583, 628
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 2 cut(s) 584, 629
EcoICRI GAGCTC 2 cut(s) 583, 628
EcoRII CCWGG 1 cut(s) 83
EcoT38I GRGCYC 2 cut(s) 585, 630
FaeI CATG 2 cut(s) 613, 665
FaiI YATR 3 cut(s) 605, 611, 663
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 609, 661
FauI CCCGC 1 cut(s) 436
Fnu4HI GCNGC 6 cut(s) 37, 178, 292, 418, 441, 462
FokI GGATG 2 cut(s) 104, 626
FriOI GRGCYC 2 cut(s) 585, 630
Fsp4HI GCNGC 6 cut(s) 37, 178, 292, 418, 441, 462
GluI GCNGC 6 cut(s) 37, 178, 292, 418, 441, 462
GsuI CTGGAG 2 cut(s) 269, 572
HaeIII GGCC 4 cut(s) 36, 83, 267, 280
HapII CCGG 2 cut(s) 29, 264
HgaI GACGC 2 cut(s) 161, 169
Hin1I GRCGYC 3 cut(s) 153, 180, 201
Hin1II CATG 2 cut(s) 613, 665
HinfI GANTC 1 cut(s) 344
HpaII CCGG 2 cut(s) 29, 264
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 1 cut(s) 129
Hpy188III TCNNGA 2 cut(s) 492, 631
Hpy99I CGWCG 2 cut(s) 425, 428
HpyAV CCTTC 2 cut(s) 133, 292
HpyCH4III ACNGT 4 cut(s) 47, 95, 334, 428
HpyCH4IV ACGT 3 cut(s) 99, 201, 227
HpyCH4V TGCA 3 cut(s) 210, 468, 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 216, 556, 589
HpySE526I ACGT 3 cut(s) 99, 201, 227
Hsp92I GRCGYC 3 cut(s) 153, 180, 201
Hsp92II CATG 2 cut(s) 613, 665
LmnI GCTCC 5 cut(s) 458, 547, 580, 625, 651
LweI GCATC 2 cut(s) 126, 228
MaeII ACGT 3 cut(s) 99, 201, 227
MaeIII GTNAC 1 cut(s) 95
MbiI CCGCTC 1 cut(s) 461
MboII GAAGA 4 cut(s) 244, 541, 646, 649
MhlI GDGCHC 2 cut(s) 585, 630
MluCI AATT 3 cut(s) 160, 473, 486
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 29
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 2 cut(s) 107, 159
MspI CCGG 2 cut(s) 29, 264
MspR9I CCNGG 3 cut(s) 29, 85, 264
MvaI CCWGG 1 cut(s) 85
MvnI CGCG 2 cut(s) 39, 420
MwoI GCNNNNNNNGC 3 cut(s) 216, 556, 589
NciI CCSGG 2 cut(s) 29, 264
NlaIII CATG 2 cut(s) 613, 665
NlaIV GGNNCC 1 cut(s) 215
NspI RCATGY 1 cut(s) 665
NspV TTCGAA 1 cut(s) 527
PaeR7I CTCGAG 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 605
PkrI GCNGC 6 cut(s) 38, 179, 293, 419, 442, 463
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PshAI GACNNNNGTC 2 cut(s) 200, 390
Psp124BI GAGCTC 2 cut(s) 585, 630
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 215
PspPI GGNCC 3 cut(s) 4, 266, 279
PspXI VCTCGAGB 1 cut(s) 584
RsaI GTAC 4 cut(s) 19, 242, 509, 656
RsaNI GTAC 4 cut(s) 18, 241, 508, 655
SacI GAGCTC 2 cut(s) 585, 630
SaqAI TTAA 2 cut(s) 107, 159
SatI GCNGC 6 cut(s) 37, 178, 292, 418, 441, 462
Sau96I GGNCC 3 cut(s) 4, 266, 279
ScaI AGTACT 1 cut(s) 656
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 29, 85, 264
SduI GDGCHC 2 cut(s) 585, 630
SfaNI GCATC 2 cut(s) 126, 228
Sfr274I CTCGAG 1 cut(s) 584
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 3 cut(s) 160, 473, 486
SstI GAGCTC 2 cut(s) 585, 630
StyD4I CCNGG 3 cut(s) 27, 83, 262
TaaI ACNGT 4 cut(s) 47, 95, 334, 428
TaiI ACGT 3 cut(s) 102, 204, 230
TaqI TCGA 6 cut(s) 222, 257, 491, 527, 573, 585
TasI AATT 3 cut(s) 160, 473, 486
TatI WGTACW 2 cut(s) 240, 654
TauI GCSGC 6 cut(s) 39, 180, 294, 420, 443, 464
Tru1I TTAA 2 cut(s) 107, 159
Tru9I TTAA 2 cut(s) 107, 159
TscAI CASTG 2 cut(s) 212, 376
TspDTI ATGAA 2 cut(s) 598, 656
TspGWI ACGGA 2 cut(s) 80, 113
TspRI CASTG 2 cut(s) 212, 376
VpaK11BI GGWCC 1 cut(s) 4
XceI RCATGY 1 cut(s) 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 584
XmnI GAANNNNTTC 1 cut(s) 605
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.