Rroxscaffold_4G00286330
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008985
Physical Location & Seq
Reverse (-)
7389358 .. 7389867
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286330.1

Sequence Viewer

Length: 510 bp
ATGGAGCGCCCGACCCGGCCCTACGCCCCGGGCGGCCGCGAGGACTGCTGGAGCGACGACGCCACGTCAGTGCTGATAACGGCGTGGGGCGACCGTTACGTCCGCCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGAAGGAGGTGGCGGACGCCGTCAACTCCCGCCGCGACGGCGCCGTTTTCAAGACCGACGGGCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGCTCGAAAAGTCCAAGCCCTTCCCCTCCACGTGGATCTTCTACGACAGCCTGGACTCGCTGATCGGAGTCCCCTCCTCAAACGCCGCCGTTTTGACCAGACCCGCGAAGCCACTCACACTCGCCCTGACCCTCAAGTCCGCCGCCGACCCCAGTCCCCTGGGTTTCCGCGGCGGCGGCTCCACGGAGAGCGACGGCGAGGATGACGTGGAGGGGGAGGAGTGGGGCTGGCGGGTGGGGCGGCGTGTAGGGAACTGGCGAGGGCGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

169

Amino Acids

18.92

Weight (kDa)

9.3

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 100 1.8e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 98, 373
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 5 cut(s) 39, 114, 171, 344, 408
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 1 cut(s) 245
AcvI CACGTG 1 cut(s) 270
AcyI GRCGYC 3 cut(s) 60, 153, 177
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 130, 270
AgsI TTSAA 1 cut(s) 187
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 2 cut(s) 66, 445
AjnI CCWGG 2 cut(s) 288, 396
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 1 cut(s) 241
AluI AGCT 1 cut(s) 241
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 2 cut(s) 17, 34
AspLEI GCGC 2 cut(s) 9, 179
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 3 cut(s) 16, 29, 30
AvaI CYCGRG 1 cut(s) 28
BanI GGYRCC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbrPI CACGTG 1 cut(s) 270
BceAI ACGGC 6 cut(s) 96, 140, 164, 190, 311, 448
BciT130I CCWGG 2 cut(s) 290, 398
BcnI CCSGG 3 cut(s) 16, 29, 30
BfoI RGCGCY 2 cut(s) 10, 180
BglI GCCNNNNNGGC 1 cut(s) 174
Bme1390I CCNGG 5 cut(s) 16, 29, 30, 290, 398
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 28
BmgBI CACGTC 2 cut(s) 66, 445
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 2 cut(s) 178, 418
BmrFI CCNGG 5 cut(s) 16, 29, 30, 290, 398
BmrI ACTGGG 1 cut(s) 384
BmuI ACTGGG 1 cut(s) 384
BoxI GACNNNNGTC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 356
BpuMI CCSGG 3 cut(s) 16, 29, 30
BsaAI YACGTR 1 cut(s) 270
BsaHI GRCGYC 3 cut(s) 60, 153, 177
BsaJI CCNNGG 7 cut(s) 27, 28, 112, 396, 397, 406, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 270
Bse1I ACTGG 3 cut(s) 140, 390, 497
BseBI CCWGG 2 cut(s) 290, 398
BseDI CCNNGG 7 cut(s) 27, 28, 112, 396, 397, 406, 420
BseGI GGATG 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 130, 270
BseNI ACTGG 3 cut(s) 140, 390, 497
BseRI GAGGAG 2 cut(s) 304, 470
BseX3I CGGCCG 1 cut(s) 34
Bsh1236I CGCG 5 cut(s) 39, 114, 171, 344, 408
Bsh1285I CGRYCG 2 cut(s) 37, 94
BshFI GGCC 2 cut(s) 19, 36
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 2 cut(s) 37, 94
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 2 cut(s) 16, 29
BslFI GGGAC 2 cut(s) 293, 378
BslI CCNNNNNNNGG 2 cut(s) 130, 270
BsmFI GGGAC 2 cut(s) 293, 378
BsnI GGCC 2 cut(s) 19, 36
BsoBI CYCGRG 1 cut(s) 28
Bsp143I GATC 2 cut(s) 273, 300
BspANI GGCC 2 cut(s) 19, 36
BspFNI CGCG 5 cut(s) 39, 114, 171, 344, 408
BspLI GGNNCC 2 cut(s) 178, 418
BspPI GGATC 1 cut(s) 281
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 3 cut(s) 140, 390, 497
BssECI CCNNGG 7 cut(s) 27, 28, 112, 396, 397, 406, 420
BssMI GATC 2 cut(s) 273, 300
BssNI GRCGYC 3 cut(s) 60, 153, 177
Bst2UI CCWGG 2 cut(s) 290, 398
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 3 cut(s) 60, 153, 177
BstBAI YACGTR 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 467
BstDSI CCRYGG 3 cut(s) 112, 406, 420
BstF5I GGATG 1 cut(s) 445
BstFNI CGCG 5 cut(s) 39, 114, 171, 344, 408
BstH2I RGCGCY 2 cut(s) 10, 180
BstHHI GCGC 2 cut(s) 9, 179
BstKTI GATC 2 cut(s) 276, 303
BstMBI GATC 2 cut(s) 273, 300
BstMCI CGRYCG 2 cut(s) 37, 94
BstMWI GCNNNNNNNGC 6 cut(s) 45, 111, 123, 174, 414, 475
BstNI CCWGG 2 cut(s) 290, 398
BstPAI GACNNNNGTC 1 cut(s) 390
BstSCI CCNGG 5 cut(s) 14, 27, 28, 288, 396
BstUI CGCG 5 cut(s) 39, 114, 171, 344, 408
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 397
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 2 cut(s) 19, 36
BtgI CCRYGG 3 cut(s) 112, 406, 420
BtrI CACGTC 2 cut(s) 66, 445
BtsCI GGATG 1 cut(s) 445
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 75, 206
Cac8I GCNNGC 1 cut(s) 467
CciNI GCGGCCGC 1 cut(s) 34
CfoI GCGC 2 cut(s) 9, 179
Cfr13I GGNCC 1 cut(s) 18
Cfr42I CCGCGG 2 cut(s) 115, 409
Cfr9I CCCGGG 1 cut(s) 28
CseI GACGC 2 cut(s) 68, 161
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 8 cut(s) 19, 36, 241, 256, 288, 349, 417, 465
CviKI_1 RGCY 8 cut(s) 19, 36, 241, 256, 288, 349, 417, 465
CviQI GTAC 1 cut(s) 235
DinI GGCGCC 1 cut(s) 178
DpnI GATC 2 cut(s) 275, 302
DpnII GATC 2 cut(s) 273, 300
DrdI GACNNNNNNGTC 2 cut(s) 98, 373
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 2 cut(s) 98, 373
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 4 cut(s) 92, 113, 164, 367
EclXI CGGCCG 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 288, 396
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
FaqI GGGAC 2 cut(s) 293, 378
FauI CCCGC 3 cut(s) 173, 349, 462
FokI GGATG 1 cut(s) 452
GlaI GCGC 2 cut(s) 8, 178
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 2 cut(s) 10, 180
HaeIII GGCC 2 cut(s) 19, 36
HapII CCGG 2 cut(s) 16, 29
HgaI GACGC 2 cut(s) 68, 161
HhaI GCGC 2 cut(s) 9, 179
Hin1I GRCGYC 3 cut(s) 60, 153, 177
Hin6I GCGC 2 cut(s) 7, 177
HinP1I GCGC 2 cut(s) 7, 177
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 213, 293, 306
HpaII CCGG 2 cut(s) 16, 29
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 5 cut(s) 59, 62, 176, 197, 434
HpyAV CCTTC 3 cut(s) 124, 133, 268
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 4 cut(s) 65, 99, 269, 444
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 111, 123, 174, 414, 475
HpySE526I ACGT 4 cut(s) 65, 99, 269, 444
Hsp92I GRCGYC 3 cut(s) 60, 153, 177
HspAI GCGC 2 cut(s) 7, 177
KasI GGCGCC 1 cut(s) 176
KspI CCGCGG 2 cut(s) 115, 409
Kzo9I GATC 2 cut(s) 273, 300
LmnI GCTCC 3 cut(s) 4, 51, 422
MaeII ACGT 4 cut(s) 65, 99, 269, 444
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 275, 302
MboI GATC 2 cut(s) 273, 300
MboII GAAGA 3 cut(s) 238, 241, 268
MflI RGATCY 1 cut(s) 273
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 2 cut(s) 287, 315
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 114, 408
MspI CCGG 2 cut(s) 16, 29
MspR9I CCNGG 5 cut(s) 16, 29, 30, 290, 398
MvaI CCWGG 2 cut(s) 290, 398
MvnI CGCG 5 cut(s) 39, 114, 171, 344, 408
MwoI GCNNNNNNNGC 6 cut(s) 45, 111, 123, 174, 414, 475
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 3 cut(s) 16, 29, 30
NdeII GATC 2 cut(s) 273, 300
NlaIV GGNNCC 2 cut(s) 178, 418
NotI GCGGCCGC 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 397
PfeI GAWTC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 155
PleI GAGTC 2 cut(s) 287, 314
PluTI GGCGCC 1 cut(s) 180
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 2 cut(s) 287, 314
Ppu21I YACGTR 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 288, 396
PspCI CACGTG 1 cut(s) 270
PspGI CCWGG 2 cut(s) 288, 396
PspN4I GGNNCC 2 cut(s) 178, 418
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 68
SacII CCGCGG 2 cut(s) 115, 409
Sau3AI GATC 2 cut(s) 273, 300
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 287, 315
ScrFI CCNGG 5 cut(s) 16, 29, 30, 290, 398
SetI ASST 7 cut(s) 68, 102, 123, 147, 243, 272, 447
SfoI GGCGCC 1 cut(s) 178
Sfr303I CCGCGG 2 cut(s) 115, 409
SgrBI CCGCGG 2 cut(s) 115, 409
SmaI CCCGGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SspDI GGCGCC 1 cut(s) 176
StyD4I CCNGG 5 cut(s) 14, 27, 28, 288, 396
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 4 cut(s) 68, 102, 272, 447
TaqI TCGA 2 cut(s) 216, 243
TaqII GACCGA 1 cut(s) 206
TatI WGTACW 1 cut(s) 234
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 2 cut(s) 75, 206
TspGWI ACGGA 1 cut(s) 437
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 2 cut(s) 75, 206
Tth111I GACNNNGTC 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.