FvH4_7g24800
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008985
Physical Location & Seq
Forward (+)
19082968 .. 19085400
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24800.t1

Sequence Viewer

Length: 684 bp
ATGGAGCGCCCGACCCGGCCCTACGCCCCGGGCGGCCGGGAAGACTGCTGGAGCGACGACGCCACGTCAGTGCTGATCACGGCCTGGGGCGACCGTTACCTCCGTCTCAACCGCGGCAACCTCCGCCAAAAGGACTGGACAGAAGTCGCCGACGCCGTCAACTCCCGCCGTGACGGCGCCGTTTACAAGACGGACGGGCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGCTCGAAAAGTCCAAGCCCTTCCCGTCGTCCTGGATCTTCTACGACACTCTCGACTCCCTCATCGGAGTCCCCTCCTCCTCAAACGCTGCCGTTTTGAACAAACCCTCAAAGCAGCCGCTCACTCTCGCCCTGACCCTCAAAGCCGCCGACCCGCCAAGCCCGGAGAGCGATGATGACGTGGAGGAGGAGGAGGGGGGAGTAGGGTTGGGGGGTGGGGCGGCGTGTAGGGAATTGGCTAGGGCGATACTGAAGTTTGGGGAGATTTATGAGAGGATGGAGAGGTCGAAGCAGGATCAGGAGGTTGAGCTGGAGAAGCAGAGGATGGCTTTTACTAAGGAGCTTGAGGTGGAGAGGTTGAATATGTTTATGGATGCTCAGTTGGAGCTGGAGAAGATGAGGAAGAAGCGCCCCAAATACTCTCATTCTTCCGGTAAGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

228

Amino Acids

25.75

Weight (kDa)

8.29

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 100 2.8e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccBSI CCGCTC 1 cut(s) 358
AccII CGCG 1 cut(s) 114
AciI CCGC 9 cut(s) 33, 112, 114, 124, 166, 356, 384, 392, 458
AclWI GGATC 2 cut(s) 281, 540
AcoI YGGCCR 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 245, 509
AcyI GRCGYC 3 cut(s) 60, 153, 177
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 130
AgsI TTSAA 2 cut(s) 337, 598
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 2 cut(s) 66, 418
AjnI CCWGG 2 cut(s) 83, 269
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 4 cut(s) 241, 547, 580, 625
AluI AGCT 4 cut(s) 241, 547, 580, 625
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 2 cut(s) 281, 540
Ama87I CYCGRG 1 cut(s) 28
AoxI GGCC 3 cut(s) 17, 34, 81
ApeKI GCWGC 2 cut(s) 326, 352
AspLEI GCGC 3 cut(s) 9, 179, 648
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 5 cut(s) 16, 29, 30, 38, 401
AvaI CYCGRG 1 cut(s) 28
BaeI ACNNNNGTAYC 2 cut(s) 476, 509
BanI GGYRCC 1 cut(s) 176
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbsI GAAGAC 1 cut(s) 48
BbvI GCAGC 2 cut(s) 313, 364
BccI CCATC 2 cut(s) 508, 556
BceAI ACGGC 6 cut(s) 96, 140, 153, 164, 190, 314
BciT130I CCWGG 2 cut(s) 85, 271
BclI TGATCA 1 cut(s) 75
BcnI CCSGG 5 cut(s) 16, 29, 30, 38, 401
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 477
BfoI RGCGCY 3 cut(s) 10, 180, 649
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 7 cut(s) 34, 115, 327, 353, 356, 384, 459
BlsI GCNGC 7 cut(s) 35, 116, 328, 354, 357, 385, 460
Bme1390I CCNGG 7 cut(s) 16, 29, 30, 38, 85, 271, 401
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 28
BmgBI CACGTC 2 cut(s) 66, 418
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 7 cut(s) 16, 29, 30, 38, 85, 271, 401
BmsI GCATC 1 cut(s) 601
BoxI GACNNNNGTC 1 cut(s) 143
BpiI GAAGAC 1 cut(s) 48
BpmI CTGGAG 3 cut(s) 70, 569, 647
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 5 cut(s) 16, 29, 30, 38, 401
BsaHI GRCGYC 3 cut(s) 60, 153, 177
BsaJI CCNNGG 4 cut(s) 27, 28, 84, 112
BsaWI WCCGGW 1 cut(s) 668
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 2 cut(s) 85, 271
BseDI CCNNGG 4 cut(s) 27, 28, 84, 112
BseGI GGATG 3 cut(s) 519, 567, 616
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 5 cut(s) 304, 307, 437, 440, 443
BseX3I CGGCCG 1 cut(s) 34
BseXI GCAGC 2 cut(s) 313, 364
Bsh1236I CGCG 1 cut(s) 114
Bsh1285I CGRYCG 2 cut(s) 37, 94
BshFI GGCC 3 cut(s) 19, 36, 83
BshNI GGYRCC 1 cut(s) 176
BsiEI CGRYCG 2 cut(s) 37, 94
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 5 cut(s) 16, 29, 37, 401, 669
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 3 cut(s) 19, 36, 83
BsoBI CYCGRG 1 cut(s) 28
Bsp143I GATC 3 cut(s) 75, 273, 532
BspACI CCGC 9 cut(s) 33, 112, 114, 124, 166, 356, 384, 392, 458
BspANI GGCC 3 cut(s) 19, 36, 83
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 281, 540
BspT107I GGYRCC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 358
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 4 cut(s) 27, 28, 84, 112
BssMI GATC 3 cut(s) 75, 273, 532
BssNI GRCGYC 3 cut(s) 60, 153, 177
Bst2UI CCWGG 2 cut(s) 85, 271
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 3 cut(s) 60, 153, 177
BstDEI CTNAG 2 cut(s) 573, 615
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 3 cut(s) 519, 567, 616
BstFNI CGCG 1 cut(s) 114
BstH2I RGCGCY 3 cut(s) 10, 180, 649
BstHHI GCGC 3 cut(s) 9, 179, 648
BstKTI GATC 3 cut(s) 78, 276, 535
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 75, 273, 532
BstMCI CGRYCG 2 cut(s) 37, 94
BstMWI GCNNNNNNNGC 4 cut(s) 123, 174, 405, 553
BstNI CCWGG 2 cut(s) 85, 271
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 7 cut(s) 14, 27, 28, 36, 83, 269, 399
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 313, 364
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 3 cut(s) 19, 36, 83
BtgI CCRYGG 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 423
BtrI CACGTC 2 cut(s) 66, 418
BtsCI GGATG 3 cut(s) 519, 567, 616
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 75, 206
CfoI GCGC 3 cut(s) 9, 179, 648
Cfr13I GGNCC 1 cut(s) 18
Cfr42I CCGCGG 1 cut(s) 115
Cfr9I CCCGGG 1 cut(s) 28
CseI GACGC 2 cut(s) 68, 161
Csp6I GTAC 1 cut(s) 235
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 2 cut(s) 573, 615
DinI GGCGCC 1 cut(s) 178
DpnI GATC 3 cut(s) 77, 275, 534
DpnII GATC 3 cut(s) 75, 273, 532
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 34
EagI CGGCCG 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 245, 509
Eco88I CYCGRG 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 83, 269
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 110
FaiI YATR 3 cut(s) 507, 602, 608
FaqI GGGAC 1 cut(s) 293
FauI CCCGC 2 cut(s) 173, 399
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 7 cut(s) 34, 115, 327, 353, 356, 384, 459
FokI GGATG 3 cut(s) 526, 574, 623
Fsp4HI GCNGC 7 cut(s) 34, 115, 327, 353, 356, 384, 459
FspBI CTAG 1 cut(s) 477
GlaI GCGC 3 cut(s) 8, 178, 647
GluI GCNGC 7 cut(s) 34, 115, 327, 353, 356, 384, 459
GsuI CTGGAG 3 cut(s) 70, 569, 647
HaeII RGCGCY 3 cut(s) 10, 180, 649
HaeIII GGCC 3 cut(s) 19, 36, 83
HapII CCGG 5 cut(s) 16, 29, 37, 401, 669
HgaI GACGC 2 cut(s) 68, 161
HhaI GCGC 3 cut(s) 9, 179, 648
Hin1I GRCGYC 3 cut(s) 60, 153, 177
Hin6I GCGC 3 cut(s) 7, 177, 646
HinP1I GCGC 3 cut(s) 7, 177, 646
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 213, 293, 306
HpaII CCGG 5 cut(s) 16, 29, 37, 401, 669
Hpy166II GTNNAC 2 cut(s) 160, 184
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 2 cut(s) 290, 536
Hpy8I GTNNAC 2 cut(s) 160, 184
Hpy99I CGWCG 4 cut(s) 59, 62, 155, 268
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 2 cut(s) 65, 417
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 4 cut(s) 123, 174, 405, 553
HpyF3I CTNAG 2 cut(s) 573, 615
HpySE526I ACGT 2 cut(s) 65, 417
Hsp92I GRCGYC 3 cut(s) 60, 153, 177
HspAI GCGC 3 cut(s) 7, 177, 646
KasI GGCGCC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 75
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 3 cut(s) 75, 273, 532
LmnI GCTCC 4 cut(s) 4, 51, 577, 622
Lsp1109I GCAGC 2 cut(s) 313, 364
LweI GCATC 1 cut(s) 601
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 65, 417
MaeIII GTNAC 2 cut(s) 95, 170
MalI GATC 3 cut(s) 77, 275, 534
MbiI CCGCTC 1 cut(s) 358
MboI GATC 3 cut(s) 75, 273, 532
MboII GAAGA 7 cut(s) 53, 238, 241, 268, 643, 652, 657
MflI RGATCY 1 cut(s) 273
MluCI AATT 1 cut(s) 470
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 2 cut(s) 287, 315
MmeI TCCRAC 1 cut(s) 600
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 5 cut(s) 16, 29, 37, 401, 669
MspR9I CCNGG 7 cut(s) 16, 29, 30, 38, 85, 271, 401
MvaI CCWGG 2 cut(s) 85, 271
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 4 cut(s) 123, 174, 405, 553
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 5 cut(s) 16, 29, 30, 38, 401
NdeII GATC 3 cut(s) 75, 273, 532
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 68
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 288
PfeI GAWTC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 7 cut(s) 35, 116, 328, 354, 357, 385, 460
PleI GAGTC 2 cut(s) 287, 314
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 2 cut(s) 287, 314
PshAI GACNNNNGTC 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 83, 269
PspGI CCWGG 2 cut(s) 83, 269
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 68
SacII CCGCGG 1 cut(s) 115
SatI GCNGC 7 cut(s) 34, 115, 327, 353, 356, 384, 459
Sau3AI GATC 3 cut(s) 75, 273, 532
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 287, 315
ScrFI CCNGG 7 cut(s) 16, 29, 30, 38, 85, 271, 401
SfaNI GCATC 1 cut(s) 601
SfoI GGCGCC 1 cut(s) 178
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SmaI CCCGGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 1 cut(s) 470
SsiI CCGC 9 cut(s) 33, 112, 114, 124, 166, 356, 384, 392, 458
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 7 cut(s) 14, 27, 28, 36, 83, 269, 399
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 2 cut(s) 68, 420
TaqI TCGA 4 cut(s) 216, 243, 291, 524
TasI AATT 1 cut(s) 470
TatI WGTACW 1 cut(s) 234
TauI GCSGC 5 cut(s) 36, 117, 358, 386, 461
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 2 cut(s) 75, 206
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 2 cut(s) 326, 352
Tsp45I GTSAC 1 cut(s) 170
TspGWI ACGGA 2 cut(s) 92, 206
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 2 cut(s) 75, 206
Tth111I GACNNNGTC 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 28
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.