RLG00000027019
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0008985
Physical Location & Seq
Reverse (-)
7703785 .. 7704690
906 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027019

Sequence Viewer

Length: 702 bp
ATGGAGCGCCCGACCCGGCCCTACGCCCCGGGCGGCCGCGAGGACTGCTGGAGCGACGACGCCACGTCAGTGCTGATAACGGCGTGGGGCGACCGTTACCTCCGCCTCAACCGCGGCAACCTCCGCCAGAAGGACTGGAAGGAGGTGGCCGACGCCGTCAACTCCAGGCGCGACGGCGCTGTTTTCAAGAGCGACGGGCAGTGCAAGAACCGAATCGACACGCTGAAGAAGAAGTACAAGCTCGAAAAGTCCAAGCCCTTCCCCTCCACGTGGATCTTCTACGACAGCCTCGACTCGCTGATCGGAGTCCCCTCCTCAAACGCCGCCGTTTTGACCAGACCCCCGAAGCCACTCACACTCGCCCTGACCCTCAAGTCCGCCGACCCCAGTCCCCTGGGTTTCCGCCGCGGCGGCTCCACGGAGAGCGACGGCGAGGATGACGTGGAGGGGGGAGGAGTAGGGTTGGCGGGTGGGGCGGCGTGTAGGGAATTGGCGAGGGCGATTTTGAAGTTCGGGGAGATTTATGAGAGGATGGAGAGTTCCAAGCAGGAGCAGATGGTTGAACTGGAGAAGCAGAGGATGGCTTTCACTAAGGAACTTGAGGTGCAGAGGTTGAATATGTTTATGGATGCTCAATTGGAGCTGGAGAAGATGAAGAAGCGCCCCAAATACTCAAAGCATTCTTCCGGAAAGAAGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

9.31

Isoelectric Point (pI)

46.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 15 - 100 2.6e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccII CGCG 4 cut(s) 39, 114, 171, 408
AccIII TCCGGA 1 cut(s) 686
AclWI GGATC 1 cut(s) 281
AcoI YGGCCR 2 cut(s) 34, 147
AcuI CTGAAG 1 cut(s) 245
AcvI CACGTG 1 cut(s) 270
AcyI GRCGYC 2 cut(s) 60, 153
AfaI GTAC 1 cut(s) 236
AfiI CCNNNNNNNGG 2 cut(s) 130, 270
AgsI TTSAA 4 cut(s) 187, 508, 563, 616
AhdI GACNNNNNGTC 1 cut(s) 64
AjiI CACGTC 2 cut(s) 66, 442
AjnI CCWGG 2 cut(s) 164, 393
AleI CACNNNNGTG 1 cut(s) 68
AloI GAACNNNNNNTCC 2 cut(s) 523, 555
AluBI AGCT 2 cut(s) 241, 643
AluI AGCT 2 cut(s) 241, 643
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 28
Aor13HI TCCGGA 1 cut(s) 686
AoxI GGCC 3 cut(s) 17, 34, 147
AspLEI GCGC 4 cut(s) 9, 171, 179, 663
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 3 cut(s) 16, 29, 30
AvaI CYCGRG 1 cut(s) 28
BarI GAAGNNNNNNTAC 2 cut(s) 218, 250
BbrPI CACGTG 1 cut(s) 270
BccI CCATC 3 cut(s) 526, 550, 574
BceAI ACGGC 5 cut(s) 96, 140, 190, 311, 445
BciT130I CCWGG 2 cut(s) 166, 395
BcnI CCSGG 3 cut(s) 16, 29, 30
BfoI RGCGCY 3 cut(s) 10, 180, 664
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 8 cut(s) 34, 37, 115, 324, 406, 409, 412, 477
BlsI GCNGC 8 cut(s) 35, 38, 116, 325, 407, 410, 413, 478
Bme1390I CCNGG 5 cut(s) 16, 29, 30, 166, 395
BmeRI GACNNNNNGTC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 28
BmgBI CACGTC 2 cut(s) 66, 442
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 5 cut(s) 16, 29, 30, 166, 395
BmrI ACTGGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 381
BoxI GACNNNNGTC 1 cut(s) 387
BpmI CTGGAG 4 cut(s) 70, 148, 587, 665
BpuEI CTTGAG 2 cut(s) 356, 620
BpuMI CCSGG 3 cut(s) 16, 29, 30
BsaAI YACGTR 1 cut(s) 270
BsaHI GRCGYC 2 cut(s) 60, 153
BsaJI CCNNGG 7 cut(s) 27, 28, 112, 393, 394, 406, 417
BsaWI WCCGGW 1 cut(s) 686
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 270
Bse1I ACTGG 3 cut(s) 140, 387, 570
BseAI TCCGGA 1 cut(s) 686
BseBI CCWGG 2 cut(s) 166, 395
BseDI CCNNGG 7 cut(s) 27, 28, 112, 393, 394, 406, 417
BseGI GGATG 4 cut(s) 442, 537, 585, 634
BseLI CCNNNNNNNGG 2 cut(s) 130, 270
BseNI ACTGG 3 cut(s) 140, 387, 570
BseRI GAGGAG 2 cut(s) 304, 468
BseX3I CGGCCG 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 4 cut(s) 39, 114, 171, 408
Bsh1285I CGRYCG 2 cut(s) 37, 94
BshFI GGCC 3 cut(s) 19, 36, 149
BsiEI CGRYCG 2 cut(s) 37, 94
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 3 cut(s) 16, 29, 687
BslFI GGGAC 2 cut(s) 293, 375
BslI CCNNNNNNNGG 2 cut(s) 130, 270
BsmFI GGGAC 2 cut(s) 293, 375
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 3 cut(s) 19, 36, 149
BsoBI CYCGRG 1 cut(s) 28
Bsp13I TCCGGA 1 cut(s) 686
Bsp143I GATC 2 cut(s) 273, 300
BspANI GGCC 3 cut(s) 19, 36, 149
BspEI TCCGGA 1 cut(s) 686
BspFNI CGCG 4 cut(s) 39, 114, 171, 408
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 1 cut(s) 281
BsrI ACTGG 3 cut(s) 140, 387, 570
BssECI CCNNGG 7 cut(s) 27, 28, 112, 393, 394, 406, 417
BssMI GATC 2 cut(s) 273, 300
BssNI GRCGYC 2 cut(s) 60, 153
Bst2UI CCWGG 2 cut(s) 166, 395
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 2 cut(s) 60, 153
BstBAI YACGTR 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 591
BstDSI CCRYGG 3 cut(s) 112, 406, 417
BstF5I GGATG 4 cut(s) 442, 537, 585, 634
BstFNI CGCG 4 cut(s) 39, 114, 171, 408
BstH2I RGCGCY 3 cut(s) 10, 180, 664
BstHHI GCGC 4 cut(s) 9, 171, 179, 663
BstKTI GATC 2 cut(s) 276, 303
BstMBI GATC 2 cut(s) 273, 300
BstMCI CGRYCG 2 cut(s) 37, 94
BstMWI GCNNNNNNNGC 5 cut(s) 45, 111, 123, 411, 473
BstNI CCWGG 2 cut(s) 166, 395
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 5 cut(s) 14, 27, 28, 164, 393
BstUI CGCG 4 cut(s) 39, 114, 171, 408
BstX2I RGATCY 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 394
BstYI RGATCY 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 34
BsuRI GGCC 3 cut(s) 19, 36, 149
BtgI CCRYGG 3 cut(s) 112, 406, 417
BtrI CACGTC 2 cut(s) 66, 442
BtsCI GGATG 4 cut(s) 442, 537, 585, 634
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 75, 206
CciNI GCGGCCGC 1 cut(s) 34
CfoI GCGC 4 cut(s) 9, 171, 179, 663
Cfr13I GGNCC 1 cut(s) 18
Cfr42I CCGCGG 2 cut(s) 115, 409
Cfr9I CCCGGG 1 cut(s) 28
CseI GACGC 2 cut(s) 68, 161
Csp6I GTAC 1 cut(s) 235
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 591
DpnI GATC 2 cut(s) 275, 302
DpnII GATC 2 cut(s) 273, 300
DrdI GACNNNNNNGTC 1 cut(s) 373
DriI GACNNNNNGTC 1 cut(s) 64
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 2 cut(s) 34, 147
EagI CGGCCG 1 cut(s) 34
Eam1105I GACNNNNNGTC 1 cut(s) 64
EciI GGCGGA 4 cut(s) 92, 113, 367, 392
EclXI CGGCCG 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 245
Eco72I CACGTG 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 164, 393
FaiI YATR 3 cut(s) 525, 620, 626
FaqI GGGAC 2 cut(s) 293, 375
FauI CCCGC 1 cut(s) 460
Fnu4HI GCNGC 8 cut(s) 34, 37, 115, 324, 406, 409, 412, 477
FokI GGATG 4 cut(s) 449, 544, 592, 641
Fsp4HI GCNGC 8 cut(s) 34, 37, 115, 324, 406, 409, 412, 477
GlaI GCGC 4 cut(s) 8, 170, 178, 662
GluI GCNGC 8 cut(s) 34, 37, 115, 324, 406, 409, 412, 477
GsuI CTGGAG 4 cut(s) 70, 148, 587, 665
HaeII RGCGCY 3 cut(s) 10, 180, 664
HaeIII GGCC 3 cut(s) 19, 36, 149
HapII CCGG 3 cut(s) 16, 29, 687
HgaI GACGC 2 cut(s) 68, 161
HhaI GCGC 4 cut(s) 9, 171, 179, 663
Hin1I GRCGYC 2 cut(s) 60, 153
Hin6I GCGC 4 cut(s) 7, 169, 177, 661
HinP1I GCGC 4 cut(s) 7, 169, 177, 661
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 213, 293, 306
HpaII CCGG 3 cut(s) 16, 29, 687
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 1 cut(s) 305
Hpy188III TCNNGA 3 cut(s) 187, 687, 699
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 6 cut(s) 59, 62, 155, 176, 197, 431
HpyAV CCTTC 3 cut(s) 124, 133, 268
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 3 cut(s) 65, 269, 441
HpyCH4V TGCA 2 cut(s) 204, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 45, 111, 123, 411, 473
HpyF3I CTNAG 1 cut(s) 591
HpySE526I ACGT 3 cut(s) 65, 269, 441
Hsp92I GRCGYC 2 cut(s) 60, 153
HspAI GCGC 4 cut(s) 7, 169, 177, 661
Kpn2I TCCGGA 1 cut(s) 686
KspI CCGCGG 2 cut(s) 115, 409
Kzo9I GATC 2 cut(s) 273, 300
LmnI GCTCC 5 cut(s) 4, 51, 419, 550, 640
LweI GCATC 1 cut(s) 619
MaeII ACGT 3 cut(s) 65, 269, 441
MaeIII GTNAC 1 cut(s) 95
MalI GATC 2 cut(s) 275, 302
MboI GATC 2 cut(s) 273, 300
MboII GAAGA 6 cut(s) 238, 241, 268, 661, 667, 675
MfeI CAATTG 1 cut(s) 635
MflI RGATCY 1 cut(s) 273
MluCI AATT 2 cut(s) 488, 635
MlyI GAGTC 2 cut(s) 287, 315
MroI TCCGGA 1 cut(s) 686
MslI CAYNNNNRTG 1 cut(s) 68
MspA1I CMGCKG 2 cut(s) 114, 408
MspI CCGG 3 cut(s) 16, 29, 687
MspR9I CCNGG 5 cut(s) 16, 29, 30, 166, 395
MunI CAATTG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 2 cut(s) 166, 395
MvnI CGCG 4 cut(s) 39, 114, 171, 408
MwoI GCNNNNNNNGC 5 cut(s) 45, 111, 123, 411, 473
NciI CCSGG 3 cut(s) 16, 29, 30
NdeII GATC 2 cut(s) 273, 300
NlaIV GGNNCC 1 cut(s) 415
NotI GCGGCCGC 1 cut(s) 34
OliI CACNNNNGTG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 288
PctI GAATGC 1 cut(s) 679
PfeI GAWTC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 8 cut(s) 35, 38, 116, 325, 407, 410, 413, 478
PleI GAGTC 2 cut(s) 287, 314
PmaCI CACGTG 1 cut(s) 270
PmlI CACGTG 1 cut(s) 270
PpsI GAGTC 2 cut(s) 287, 314
Ppu21I YACGTR 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 164, 393
PspCI CACGTG 1 cut(s) 270
PspGI CCWGG 2 cut(s) 164, 393
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 273
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 68
SacII CCGCGG 2 cut(s) 115, 409
SatI GCNGC 8 cut(s) 34, 37, 115, 324, 406, 409, 412, 477
Sau3AI GATC 2 cut(s) 273, 300
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 2 cut(s) 287, 315
ScrFI CCNGG 5 cut(s) 16, 29, 30, 166, 395
SfaNI GCATC 1 cut(s) 619
Sfr303I CCGCGG 2 cut(s) 115, 409
SgrBI CCGCGG 2 cut(s) 115, 409
SmaI CCCGGG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 2 cut(s) 371, 599
SmoI CTYRAG 2 cut(s) 371, 599
Sse9I AATT 2 cut(s) 488, 635
StyD4I CCNGG 5 cut(s) 14, 27, 28, 164, 393
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 3 cut(s) 68, 272, 444
TaqI TCGA 3 cut(s) 216, 243, 291
TasI AATT 2 cut(s) 488, 635
TatI WGTACW 1 cut(s) 234
TauI GCSGC 8 cut(s) 36, 39, 117, 326, 408, 411, 414, 479
TfiI GAWTC 1 cut(s) 213
TscAI CASTG 2 cut(s) 75, 206
TspDTI ATGAA 1 cut(s) 668
TspGWI ACGGA 1 cut(s) 434
TspMI CCCGGG 1 cut(s) 28
TspRI CASTG 2 cut(s) 75, 206
Tth111I GACNNNGTC 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.