Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002021.1

Orthogroup ID

OG0008985

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 832

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgaaacaaccatcgacacaaggtaggacatgtgtattggaagccaagcagttccacatggttaaactagaacagttagtagtctgtccaaacccgaataggaaacctgacgtcaccgccggtcgaatccacggccagatttccattccctttccgagcccgatccttttccccatctctcacccactcccctacaacacctctcgcttccactccaacagtccaactctctctctctctctctcaacccgaacccgacccatggagcgcccgacccggccctacgccccgggcggccgcgaggactgctggagcgacgacgccacgtcagtgctgataacggcgtggggcgaccgttacctccgcctcaaccgcggcaacctccgccagaaggactggaaggaggtggcggactccgtcaactcccgccgcgacggcgccgttttcaagaccgacgggcagtgcaagaaccgaatcgacacgctgaagaagaagtacaagctcgaaaagtccaagcccttcccctccacgtggatcttctacgacagcctcgactcgctcatcggagtcccctcctcaaacgccgccgctttgaccagacccccgaagccactcacactcgccctgaccctcaagtccgccgccgaccccagtcccctgggtttccgccgctgcggctccacggagagcgacggcgaggatgacgtggaggggggaggagtagggttggcgggtggggcggcgtgtaggcaactggcgagggcgatcttgaagttcggggagatttatgagaggatggagagttccaagcaggagcagatggttgaactg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_4

Protein Analysis

277

Amino Acids

30.7

Weight (kDa)

9.39

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11100 AT5G05550 AT5G05550 AT5G05550
fragaria_vesca	FvH4_7g24800
malus_domestica	MD01G1155800.v1.1 MD07G1224600.v1.1
prunus_persica	Prupe.2G253200_v2.0.a1
pyrus_communis	pycom01g17290 pycom07g20330
rosa_chinensis	RchiOBHm_Chr1g0370671
rosa_laevigata	RLG00000027019
rosa_multiflora	Rmu_sc0002021.1_g000001 Rmu_sc0004550.1_g000009
rosa_roxburghii	Rroxscaffold_4G00286310 Rroxscaffold_4G00286330
rosa_rugosa	Rorug01G0358300
rosa_samantha	Rh1AG368000 Rh1BG331500 Rh1CG345500 Rh1DG362900
rosa_wichuraiana	Rw1G032380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	634
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	437
AccII	CGCG	3 cut(s)	300, 375, 432
AclWI	GGATC	2 cut(s)	157, 542
AcoI	YGGCCR	2 cut(s)	133, 295
AcuI	CTGAAG	1 cut(s)	506
AcvI	CACGTG	1 cut(s)	531
AcyI	GRCGYC	3 cut(s)	111, 321, 438
AfaI	GTAC	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	262, 391, 531
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	448, 772, 827
AhdI	GACNNNNNGTC	1 cut(s)	325
AjiI	CACGTC	2 cut(s)	327, 706
AjnI	CCWGG	1 cut(s)	657
AleI	CACNNNNGTG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	787, 819
AluBI	AGCT	1 cut(s)	502
AluI	AGCT	1 cut(s)	502
AlwI	GGATC	2 cut(s)	157, 542
Ama87I	CYCGRG	1 cut(s)	289
AoxI	GGCC	3 cut(s)	133, 278, 295
ApeKI	GCWGC	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	270, 440
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	3 cut(s)	277, 290, 291
AsuHPI	GGTGA	2 cut(s)	106, 173
AvaI	CYCGRG	1 cut(s)	289
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	161
BarI	GAAGNNNNNNTAC	2 cut(s)	479, 511
BbrPI	CACGTG	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	4 cut(s)	19, 182, 790, 814
BceAI	ACGGC	5 cut(s)	148, 357, 425, 451, 709
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	3 cut(s)	277, 290, 291
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	2 cut(s)	271, 441
BglI	GCCNNNNNGGC	2 cut(s)	435, 675
Bme1390I	CCNGG	4 cut(s)	277, 290, 291, 659
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmeT110I	CYCGRG	1 cut(s)	289
BmgBI	CACGTC	2 cut(s)	327, 706
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	439, 679
BmrFI	CCNGG	4 cut(s)	277, 290, 291, 659
BmrI	ACTGGG	1 cut(s)	645
BmuI	ACTGGG	1 cut(s)	645
BoxI	GACNNNNGTC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	331
BpuEI	CTTGAG	1 cut(s)	617
BpuMI	CCSGG	3 cut(s)	277, 290, 291
BsaAI	YACGTR	1 cut(s)	531
BsaHI	GRCGYC	3 cut(s)	111, 321, 438
BsaJI	CCNNGG	8 cut(s)	130, 261, 288, 289, 373, 657, 658, 681
Bsc4I	CCNNNNNNNGG	3 cut(s)	262, 391, 531
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	3 cut(s)	401, 651, 759
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	8 cut(s)	130, 261, 288, 289, 373, 657, 658, 681
BseGI	GGATG	2 cut(s)	706, 801
BseLI	CCNNNNNNNGG	3 cut(s)	262, 391, 531
BseNI	ACTGG	3 cut(s)	401, 651, 759
BseRI	GAGGAG	2 cut(s)	565, 732
BseX3I	CGGCCG	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	659
Bsh1236I	CGCG	3 cut(s)	300, 375, 432
Bsh1285I	CGRYCG	3 cut(s)	124, 298, 355
BshFI	GGCC	3 cut(s)	135, 280, 297
BshNI	GGYRCC	1 cut(s)	437
BsiEI	CGRYCG	3 cut(s)	124, 298, 355
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	120, 277, 290
BslFI	GGGAC	2 cut(s)	554, 639
BslI	CCNNNNNNNGG	3 cut(s)	262, 391, 531
BsmFI	GGGAC	2 cut(s)	554, 639
BsnI	GGCC	3 cut(s)	135, 280, 297
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	162, 534, 765
Bsp19I	CCATGG	1 cut(s)	261
BspANI	GGCC	3 cut(s)	135, 280, 297
BspFNI	CGCG	3 cut(s)	300, 375, 432
BspLI	GGNNCC	2 cut(s)	439, 679
BspPI	GGATC	2 cut(s)	157, 542
BspT107I	GGYRCC	1 cut(s)	437
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	3 cut(s)	401, 651, 759
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	8 cut(s)	130, 261, 288, 289, 373, 657, 658, 681
BssMI	GATC	3 cut(s)	162, 534, 765
BssNI	GRCGYC	3 cut(s)	111, 321, 438
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	3 cut(s)	75, 221, 356
BstACI	GRCGYC	3 cut(s)	111, 321, 438
BstBAI	YACGTR	1 cut(s)	531
BstDSI	CCRYGG	4 cut(s)	130, 261, 373, 681
BstF5I	GGATG	2 cut(s)	706, 801
BstFNI	CGCG	3 cut(s)	300, 375, 432
BstH2I	RGCGCY	2 cut(s)	271, 441
BstHHI	GCGC	2 cut(s)	270, 440
BstKTI	GATC	3 cut(s)	165, 537, 768
BstMBI	GATC	3 cut(s)	162, 534, 765
BstMCI	CGRYCG	3 cut(s)	124, 298, 355
BstMWI	GCNNNNNNNGC	6 cut(s)	306, 372, 384, 435, 675, 737
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	33
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	4 cut(s)	275, 288, 289, 657
BstUI	CGCG	3 cut(s)	300, 375, 432
BstV1I	GCAGC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	534
BstZI	CGGCCG	1 cut(s)	295
BsuRI	GGCC	3 cut(s)	135, 280, 297
BtgI	CCRYGG	4 cut(s)	130, 261, 373, 681
BtrI	CACGTC	2 cut(s)	327, 706
BtsCI	GGATG	2 cut(s)	706, 801
BtsI	GCAGTG	1 cut(s)	467
BtsIMutI	CAGTG	2 cut(s)	336, 467
CciNI	GCGGCCGC	1 cut(s)	295
CfoI	GCGC	2 cut(s)	270, 440
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	1 cut(s)	279
Cfr42I	CCGCGG	1 cut(s)	376
Cfr9I	CCCGGG	1 cut(s)	289
CseI	GACGC	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	3 cut(s)	30, 58, 262
CviQI	GTAC	1 cut(s)	496
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	3 cut(s)	164, 536, 767
DpnII	GATC	3 cut(s)	162, 534, 765
DrdI	GACNNNNNNGTC	1 cut(s)	634
DriI	GACNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	634
EaeI	YGGCCR	2 cut(s)	133, 295
EagI	CGGCCG	1 cut(s)	295
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EciI	GGCGGA	5 cut(s)	353, 374, 425, 628, 656
EclXI	CGGCCG	1 cut(s)	295
Eco130I	CCWWGG	1 cut(s)	261
Eco24I	GRGCYC	1 cut(s)	161
Eco52I	CGGCCG	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	506
Eco72I	CACGTG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	161
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	33, 61, 265
FaiI	YATR	4 cut(s)	31, 59, 263, 789
FaqI	GGGAC	2 cut(s)	554, 639
FatI	CATG	3 cut(s)	29, 57, 261
FauI	CCCGC	2 cut(s)	434, 724
FokI	GGATG	2 cut(s)	713, 808
FriOI	GRGCYC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	2 cut(s)	269, 439
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	2 cut(s)	271, 441
HaeIII	GGCC	3 cut(s)	135, 280, 297
HapII	CCGG	3 cut(s)	120, 277, 290
HgaI	GACGC	1 cut(s)	329
HhaI	GCGC	2 cut(s)	270, 440
Hin1I	GRCGYC	3 cut(s)	111, 321, 438
Hin1II	CATG	3 cut(s)	33, 61, 265
Hin6I	GCGC	2 cut(s)	268, 438
HinP1I	GCGC	2 cut(s)	268, 438
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	5 cut(s)	126, 413, 474, 554, 567
HpaII	CCGG	3 cut(s)	120, 277, 290
HphI	GGTGA	2 cut(s)	106, 173
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	2 cut(s)	156, 566
Hpy188III	TCNNGA	2 cut(s)	448, 769
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	5 cut(s)	320, 323, 437, 458, 695
HpyAV	CCTTC	3 cut(s)	385, 394, 529
HpyCH4III	ACNGT	3 cut(s)	75, 221, 356
HpyCH4IV	ACGT	4 cut(s)	111, 326, 530, 705
HpyCH4V	TGCA	1 cut(s)	465
HpyF10VI	GCNNNNNNNGC	6 cut(s)	306, 372, 384, 435, 675, 737
HpySE526I	ACGT	4 cut(s)	111, 326, 530, 705
Hsp92I	GRCGYC	3 cut(s)	111, 321, 438
Hsp92II	CATG	3 cut(s)	33, 61, 265
HspAI	GCGC	2 cut(s)	268, 438
KasI	GGCGCC	1 cut(s)	437
KspI	CCGCGG	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	162, 534, 765
LmnI	GCTCC	4 cut(s)	265, 312, 683, 814
Lsp1109I	GCAGC	1 cut(s)	659
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	4 cut(s)	111, 326, 530, 705
MaeIII	GTNAC	2 cut(s)	112, 356
MalI	GATC	3 cut(s)	164, 536, 767
MboI	GATC	3 cut(s)	162, 534, 765
MboII	GAAGA	3 cut(s)	499, 502, 529
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	161
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	3 cut(s)	407, 548, 576
MmeI	TCCRAC	2 cut(s)	240, 248
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	375, 672
MspI	CCGG	3 cut(s)	120, 277, 290
MspR9I	CCNGG	4 cut(s)	277, 290, 291, 659
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	3 cut(s)	300, 375, 432
MwoI	GCNNNNNNNGC	6 cut(s)	306, 372, 384, 435, 675, 737
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	3 cut(s)	277, 290, 291
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	3 cut(s)	162, 534, 765
NlaIII	CATG	3 cut(s)	33, 61, 265
NlaIV	GGNNCC	2 cut(s)	439, 679
NmuCI	GTSAC	1 cut(s)	112
NotI	GCGGCCGC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	33
OliI	CACNNNNGTG	1 cut(s)	329
PasI	CCCWGGG	1 cut(s)	658
PciI	ACATGT	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	126, 474
PflFI	GACNNNGTC	1 cut(s)	416
PleI	GAGTC	3 cut(s)	407, 548, 575
PluTI	GGCGCC	1 cut(s)	441
PmaCI	CACGTG	1 cut(s)	531
PmlI	CACGTG	1 cut(s)	531
PpsI	GAGTC	3 cut(s)	407, 548, 575
Ppu21I	YACGTR	1 cut(s)	531
PscI	ACATGT	1 cut(s)	29
PshAI	GACNNNNGTC	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	657
PspCI	CACGTG	1 cut(s)	531
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	2 cut(s)	439, 679
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	534
PsyI	GACNNNGTC	1 cut(s)	416
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	329
SacII	CCGCGG	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	3 cut(s)	162, 534, 765
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	3 cut(s)	407, 548, 576
ScrFI	CCNGG	4 cut(s)	277, 290, 291, 659
SduI	GDGCHC	1 cut(s)	161
SfoI	GGCGCC	1 cut(s)	439
Sfr303I	CCGCGG	1 cut(s)	376
SgrBI	CCGCGG	1 cut(s)	376
SmaI	CCCGGG	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	4 cut(s)	275, 288, 289, 657
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	3 cut(s)	75, 221, 356
TaiI	ACGT	4 cut(s)	114, 329, 533, 708
TaqI	TCGA	5 cut(s)	14, 124, 477, 504, 552
TaqII	GACCGA	1 cut(s)	467
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	126, 474
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	2 cut(s)	336, 467
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	672
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	406, 698
TspMI	CCCGGG	1 cut(s)	289
TspRI	CASTG	2 cut(s)	336, 467
Tth111I	GACNNNGTC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	33
XmaI	CCCGGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	68
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.