Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008236

Physical Location & Seq

Genomic Coordinates Reverse (-)

3533207 .. 3534994

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAGACTCTGCATCCATTCTCTCACCTACCTATCTCTGACCACCGGTTCGTTGTTCAAGAGATGGTGAGCTTACACAGCTCGAGTAGCGGTAGCTGGACTAAAGAAGAGAACAAGATGTTCGAACGAGCTCTTGCGATATACGCTGAAGACTCGCCTGATCGCTGGTTTAAAGTTGCTTCCATGATCCCTGGAAAGACTGTTTTTGATGTTATGAAGCAATATAGTAAGCTTGAAGAAGACGTTTTCGATATTGAAGCAGGACGTGTTCCCATTCCTGGTTATCCTGCAGCTTCTTCTCCCTTGGGGTTTGACACGGACATGTGTCGTAAACGGCCTAGTGGAGCTAGAGGATCTGATCAAGATCGAAAGAAAGGAGTCCCTTGGACAGAGGAAGAACACAGGAGATTCTTGTTAGGCCTTCTCAAGTACGGTAAAGGAGATTGGAGAAACATATCGAGAAACTTCGTGGTGTCAAAGACGCCAACGCAAGTGGCGAGCCACGCCCAAAAGTATTACCAGAGACAGCTCTCCGGAGCCAAGGACAAACGCAGGCCAAGTATCCATGACATCACAACCGGCAATCTTCTCAATGCCAATCTCAACCGTTCCTTTTCCGATCATAGAGATATTCTCCCTGATTTAGGGTTTATCGATAAGGATGATACGGAGGAGGGAGTAATATTTATGGGTCAGAATCTCTCTTCAGAAAATCTGTTTTCTCCATCACCAACTTCATTCGAAGCTGCCATTAACTTCGCCGGAGAAAATGTCTTCAGTGCCGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

263

Amino Acids

29.61

Weight (kDa)

6.25

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 77	7.4e-06	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	127 - 172	8.5e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11280 AT3G11280 AT5G05790 AT5G05790
fragaria_vesca	FvH4_7g23990 FvH4_7g23990 FvH4_7g23990
malus_domestica	MD01G1146800.v1.1 MD07G1213500.v1.1
prunus_persica	Prupe.2G245900_v2.0.a1 Prupe.2G245900_v2.0.a1
pyrus_communis	pycom01g16600 pycom07g19630
rosa_chinensis	RchiOBHm_Chr1g0369341
rosa_laevigata	RLG00000027136
rosa_multiflora	Rmu_sc0001482.1_g000009
rosa_roxburghii	Rroxscaffold_4G00287720
rosa_rugosa	Rorug01G0349700
rosa_samantha	Rh1AG356900 Rh1BG320900 Rh1CG334900 Rh1DG351600
rosa_wichuraiana	Rw1G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	181, 361
AcuI	CTGAAG	3 cut(s)	168, 690, 760
AcyI	GRCGYC	1 cut(s)	482
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	278, 644
AflIII	ACRYGT	2 cut(s)	265, 321
AgeI	ACCGGT	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	59, 236, 257
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	190, 277
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	2 cut(s)	181, 361
Ama87I	CYCGRG	1 cut(s)	82
Aor13HI	TCCGGA	1 cut(s)	533
AoxI	GGCC	3 cut(s)	335, 418, 554
ApeKI	GCWGC	2 cut(s)	290, 746
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
AsiGI	ACCGGT	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	17, 79, 720
AsuII	TTCGAA	2 cut(s)	123, 741
AvaI	CYCGRG	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	133
BbsI	GAAGAC	3 cut(s)	156, 246, 766
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	302, 733
BccI	CCATC	2 cut(s)	58, 733
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	2 cut(s)	192, 279
BciVI	GTATCC	1 cut(s)	572
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	2 cut(s)	339, 348
BfmI	CTRYAG	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	572
BisI	GCNGC	2 cut(s)	291, 747
BlsI	GCNGC	2 cut(s)	292, 748
Bme1390I	CCNGG	2 cut(s)	192, 279
BmeT110I	CYCGRG	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	2 cut(s)	192, 279
BmsI	GCATC	1 cut(s)	22
BoxI	GACNNNNGTC	1 cut(s)	324
BpiI	GAAGAC	3 cut(s)	156, 246, 766
BplI	GAGNNNNNCTC	2 cut(s)	618, 650
Bpu14I	TTCGAA	2 cut(s)	123, 741
BpuEI	CTTGAG	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	654
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	190, 303, 383, 540
BsaWI	WCCGGW	2 cut(s)	45, 533
BsaXI	ACNNNNNCTCC	2 cut(s)	756, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 644
Bse118I	RCCGGY	2 cut(s)	45, 578
Bse8I	GATNNNNATC	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	192, 279
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	4 cut(s)	190, 303, 383, 540
BseGI	GGATG	2 cut(s)	13, 667
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	2 cut(s)	278, 644
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	302, 733
BshFI	GGCC	3 cut(s)	337, 420, 556
BshTI	ACCGGT	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	5 cut(s)	46, 534, 579, 762, 783
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	278, 644
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	3 cut(s)	337, 420, 556
BsoBI	CYCGRG	1 cut(s)	82
Bsp119I	TTCGAA	2 cut(s)	123, 741
Bsp1286I	GDGCHC	1 cut(s)	133
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	337, 420, 556
BspDI	ATCGAT	1 cut(s)	654
BspEI	TCCGGA	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	538
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	2 cut(s)	181, 361
BspT104I	TTCGAA	2 cut(s)	123, 741
BsrFI	RCCGGY	2 cut(s)	45, 578
BssAI	RCCGGY	2 cut(s)	45, 578
BssECI	CCNNGG	4 cut(s)	190, 303, 383, 540
BssMI	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
BssNI	GRCGYC	1 cut(s)	482
BssT1I	CCWWGG	3 cut(s)	303, 383, 540
Bst2UI	CCWGG	2 cut(s)	192, 279
Bst4CI	ACNGT	3 cut(s)	202, 434, 608
Bst6I	CTCTTC	2 cut(s)	102, 709
BstACI	GRCGYC	1 cut(s)	482
BstBI	TTCGAA	2 cut(s)	123, 741
BstC8I	GCNNGC	2 cut(s)	499, 554
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	13, 667
BstKTI	GATC	6 cut(s)	163, 189, 356, 361, 367, 622
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	78, 87, 143, 503
BstNI	CCWGG	2 cut(s)	192, 279
BstNSI	RCATGY	1 cut(s)	325
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	190, 277
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	302, 733
BstV2I	GAAGAC	3 cut(s)	156, 246, 766
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
Bsu15I	ATCGAT	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	572
BsuRI	GGCC	3 cut(s)	337, 420, 556
BsuTUI	ATCGAT	1 cut(s)	654
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	13, 667
BtsIMutI	CAGTG	1 cut(s)	784
Cac8I	GCNNGC	2 cut(s)	499, 554
Cfr10I	RCCGGY	2 cut(s)	45, 578
ClaI	ATCGAT	1 cut(s)	654
CseI	GACGC	1 cut(s)	490
Csp6I	GTAC	1 cut(s)	430
CspAI	ACCGGT	1 cut(s)	45
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	3 cut(s)	184, 322, 566
CviQI	GTAC	1 cut(s)	430
DpnI	GATC	6 cut(s)	162, 188, 355, 360, 366, 621
DpnII	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	102, 709
EarI	CTCTTC	2 cut(s)	102, 709
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	3 cut(s)	303, 383, 540
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	3 cut(s)	168, 690, 760
Eco88I	CYCGRG	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	131
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoRII	CCWGG	2 cut(s)	190, 277
EcoT14I	CCWWGG	3 cut(s)	303, 383, 540
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	3 cut(s)	303, 383, 540
FaeI	CATG	3 cut(s)	187, 325, 569
FaiI	YATR	9 cut(s)	142, 185, 215, 225, 323, 455, 567, 624, 689
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	3 cut(s)	183, 321, 565
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	2 cut(s)	291, 747
FokI	GGATG	1 cut(s)	674
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	291, 747
FspBI	CTAG	2 cut(s)	339, 348
GluI	GCNGC	2 cut(s)	291, 747
HaeIII	GGCC	3 cut(s)	337, 420, 556
HapII	CCGG	5 cut(s)	46, 534, 579, 762, 783
HgaI	GACGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	482
Hin1II	CATG	3 cut(s)	187, 325, 569
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	7, 152, 378, 408, 697
HpaII	CCGG	5 cut(s)	46, 534, 579, 762, 783
HphI	GGTGA	3 cut(s)	17, 79, 720
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188I	TCNGA	5 cut(s)	40, 358, 619, 696, 709
Hpy188III	TCNNGA	4 cut(s)	59, 362, 459, 534
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	3 cut(s)	202, 434, 608
HpyCH4IV	ACGT	2 cut(s)	243, 265
HpyCH4V	TGCA	2 cut(s)	13, 290
HpyF10VI	GCNNNNNNNGC	4 cut(s)	78, 87, 143, 503
HpySE526I	ACGT	2 cut(s)	243, 265
Hsp92I	GRCGYC	1 cut(s)	482
Hsp92II	CATG	3 cut(s)	187, 325, 569
Kpn2I	TCCGGA	1 cut(s)	533
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
LmnI	GCTCC	3 cut(s)	344, 536, 785
Lsp1109I	GCAGC	2 cut(s)	302, 733
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	339, 348
MaeII	ACGT	2 cut(s)	243, 265
MalI	GATC	6 cut(s)	162, 188, 355, 360, 366, 621
MboI	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
MboII	GAAGA	9 cut(s)	119, 161, 248, 251, 288, 407, 578, 696, 766
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	133
MlyI	GAGTC	2 cut(s)	146, 387
MnlI	CCTC	4 cut(s)	344, 385, 664, 667
MroI	TCCGGA	1 cut(s)	533
MseI	TTAA	3 cut(s)	171, 753, 790
MslI	CAYNNNNRTG	1 cut(s)	320
MspI	CCGG	5 cut(s)	46, 534, 579, 762, 783
MspR9I	CCNGG	2 cut(s)	192, 279
MvaI	CCWGG	2 cut(s)	192, 279
MwoI	GCNNNNNNNGC	4 cut(s)	78, 87, 143, 503
NdeII	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
NlaIII	CATG	3 cut(s)	187, 325, 569
NlaIV	GGNNCC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	325
NspV	TTCGAA	2 cut(s)	123, 741
PaeR7I	CTCGAG	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	420
PciI	ACATGT	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	408, 697
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	292, 748
PleI	GAGTC	2 cut(s)	146, 386
PpsI	GAGTC	2 cut(s)	146, 386
PscI	ACATGT	1 cut(s)	321
PshAI	GACNNNNGTC	1 cut(s)	324
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	190, 277
PspGI	CCWGG	2 cut(s)	190, 277
PspN4I	GGNNCC	1 cut(s)	538
PspXI	VCTCGAGB	1 cut(s)	82
PstI	CTGCAG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	320
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	171, 753, 790
SatI	GCNGC	2 cut(s)	291, 747
Sau3AI	GATC	6 cut(s)	160, 186, 353, 358, 364, 619
SchI	GAGTC	2 cut(s)	146, 387
ScrFI	CCNGG	2 cut(s)	192, 279
SduI	GDGCHC	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	22
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	82
SfuI	TTCGAA	2 cut(s)	123, 741
SlaI	CTCGAG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	82, 425
SmoI	CTYRAG	2 cut(s)	82, 425
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	684
SspMI	CTAG	2 cut(s)	339, 348
SstI	GAGCTC	1 cut(s)	133
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	190, 277
StyI	CCWWGG	3 cut(s)	303, 383, 540
TaaI	ACNGT	3 cut(s)	202, 434, 608
TaiI	ACGT	2 cut(s)	246, 268
TaqI	TCGA	7 cut(s)	83, 123, 249, 367, 458, 654, 741
TfiI	GAWTC	2 cut(s)	408, 697
Tru1I	TTAA	3 cut(s)	171, 753, 790
Tru9I	TTAA	3 cut(s)	171, 753, 790
TscAI	CASTG	1 cut(s)	784
TseI	GCWGC	2 cut(s)	290, 746
TspDTI	ATGAA	2 cut(s)	230, 726
TspGWI	ACGGA	2 cut(s)	332, 683
TspRI	CASTG	1 cut(s)	784
XagI	CCTNNNNNAGG	1 cut(s)	642
XceI	RCATGY	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	82
XspI	CTAG	2 cut(s)	339, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.